data_H5O # _chem_comp.id H5O _chem_comp.name "(2R,3R,4S,5R,6S)-2-(hydroxymethyl)-5-methoxy-6-[(3R,4R,5S)-4-oxidanyl-5-(4-pyrimidin-5-yl-1,2,3-triazol-1-yl)oxan-3-yl]sulfanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-3-ol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H27 F3 N8 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-12 _chem_comp.pdbx_modified_date 2021-06-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 636.603 _chem_comp.one_letter_code ? _chem_comp.three_letter_code H5O _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DF5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H5O C13 C1 C 0 1 Y N N 6.236 9.046 64.063 8.159 1.286 1.792 C13 H5O 1 H5O C18 C2 C 0 1 N N S -6.651 10.312 61.650 -5.024 -1.297 0.306 C18 H5O 2 H5O C17 C3 C 0 1 N N N -7.059 11.113 60.375 -5.232 -1.804 -1.123 C17 H5O 3 H5O C16 C4 C 0 1 N N N -4.806 11.049 59.414 -2.880 -1.704 -1.582 C16 H5O 4 H5O C15 C5 C 0 1 N N R -4.354 10.289 60.696 -2.578 -1.193 -0.171 C15 H5O 5 H5O C19 C6 C 0 1 N N R -5.132 10.609 61.957 -3.782 -0.401 0.346 C19 H5O 6 H5O C20 C7 C 0 1 Y N N -7.532 11.778 63.570 -6.954 0.260 -0.068 C20 H5O 7 H5O C21 C8 C 0 1 Y N N -8.408 11.299 64.516 -7.930 0.778 0.733 C21 H5O 8 H5O C22 C9 C 0 1 Y N N -8.821 11.676 65.713 -9.019 1.703 0.326 C22 H5O 9 H5O C23 C10 C 0 1 Y N N -8.371 12.920 66.318 -9.957 2.159 1.255 C23 H5O 10 H5O C24 C11 C 0 1 Y N N -9.444 12.189 68.239 -10.981 3.371 -0.406 C24 H5O 11 H5O C11 C12 C 0 1 Y N N 7.465 9.226 62.074 9.020 2.086 -0.304 C11 H5O 12 H5O C12 C13 C 0 1 Y N N 7.392 9.246 63.427 9.138 1.954 1.071 C12 H5O 13 H5O F2 F1 F 0 1 N N N 6.218 9.016 65.391 8.278 1.158 3.132 F2 H5O 14 H5O F1 F2 F 0 1 N N N 8.488 9.469 64.163 10.207 2.476 1.710 F1 H5O 15 H5O F F3 F 0 1 N N N 8.622 9.409 61.477 9.976 2.738 -1.003 F H5O 16 H5O C10 C14 C 0 1 Y N N 6.302 9.033 61.275 7.927 1.553 -0.961 C10 H5O 17 H5O C14 C15 C 0 1 Y N N 5.085 8.857 63.311 7.061 0.755 1.143 C14 H5O 18 H5O C9 C16 C 0 1 Y N N 5.083 8.862 61.968 6.940 0.887 -0.239 C9 H5O 19 H5O C8 C17 C 0 1 Y N N 3.891 8.640 61.171 5.764 0.313 -0.941 C8 H5O 20 H5O C7 C18 C 0 1 Y N N 2.585 8.636 61.585 4.722 -0.363 -0.375 C7 H5O 21 H5O N1 N1 N 0 1 Y N N 3.903 8.296 59.883 5.509 0.360 -2.260 N1 H5O 22 H5O N2 N2 N 0 1 Y N N 2.689 8.089 59.456 4.396 -0.241 -2.489 N2 H5O 23 H5O N N3 N 0 1 Y N N 1.868 8.330 60.473 3.895 -0.692 -1.393 N H5O 24 H5O C6 C19 C 0 1 N N S 0.460 8.180 60.266 2.635 -1.431 -1.268 C6 H5O 25 H5O C1 C20 C 0 1 N N R -0.297 9.499 60.616 1.505 -0.460 -0.913 C1 H5O 26 H5O O O1 O 0 1 N N N 0.158 10.501 59.734 1.330 0.478 -1.976 O H5O 27 H5O C C21 C 0 1 N N N 0.689 11.677 60.307 0.855 1.757 -1.551 C H5O 28 H5O C5 C22 C 0 1 N N R -0.101 7.029 61.150 2.763 -2.477 -0.156 C5 H5O 29 H5O O3 O2 O 0 1 N N N 0.122 7.285 62.523 3.127 -1.833 1.066 O3 H5O 30 H5O C3 C23 C 0 1 N N R -1.593 6.936 60.886 1.419 -3.189 0.020 C3 H5O 31 H5O C4 C24 C 0 1 N N N -2.226 5.851 61.699 1.522 -4.194 1.169 C4 H5O 32 H5O O2 O3 O 0 1 N N N -3.644 5.721 61.374 0.306 -4.940 1.259 O2 H5O 33 H5O O1 O4 O 0 1 N N N -2.224 8.179 61.252 0.407 -2.226 0.318 O1 H5O 34 H5O C2 C25 C 0 1 N N S -1.755 9.259 60.448 0.210 -1.250 -0.707 C2 H5O 35 H5O S S1 S 0 1 N N N -2.643 10.747 61.027 -1.118 -0.116 -0.216 S H5O 36 H5O O5 O5 O 0 1 N N N -4.848 9.875 63.085 -3.538 0.017 1.691 O5 H5O 37 H5O O4 O6 O 0 1 N N N -6.213 10.782 59.240 -4.064 -2.504 -1.554 O4 H5O 38 H5O N3 N4 N 0 1 Y N N -7.462 10.674 62.799 -6.197 -0.528 0.729 N3 H5O 39 H5O N5 N5 N 0 1 Y N N -8.266 9.667 63.228 -6.680 -0.488 1.921 N5 H5O 40 H5O N4 N6 N 0 1 Y N N -8.847 10.057 64.274 -7.709 0.283 1.963 N4 H5O 41 H5O C25 C26 C 0 1 Y N N -9.680 10.702 66.465 -9.128 2.146 -0.994 C25 H5O 42 H5O N7 N7 N 0 1 Y N N -9.988 10.950 67.766 -10.112 2.969 -1.313 N7 H5O 43 H5O N6 N8 N 0 1 Y N N -8.692 13.181 67.580 -10.910 2.981 0.851 N6 H5O 44 H5O H6 H1 H 0 1 N N N -6.758 9.238 61.438 -4.883 -2.145 0.977 H6 H5O 45 H5O H21 H2 H 0 1 N N N -6.969 12.189 60.586 -6.090 -2.476 -1.149 H21 H5O 46 H5O H20 H3 H 0 1 N N N -8.103 10.875 60.123 -5.414 -0.958 -1.786 H20 H5O 47 H5O H18 H4 H 0 1 N N N -4.242 10.687 58.542 -3.031 -0.856 -2.251 H18 H5O 48 H5O H19 H5 H 0 1 N N N -4.639 12.129 59.536 -2.043 -2.304 -1.939 H19 H5O 49 H5O H5 H6 H 0 1 N N N -4.364 9.205 60.507 -2.386 -2.039 0.489 H5 H5O 50 H5O H7 H7 H 0 1 N N N -5.035 11.685 62.163 -3.943 0.473 -0.285 H7 H5O 51 H5O H23 H8 H 0 1 N N N -7.050 12.740 63.474 -6.817 0.439 -1.124 H23 H5O 52 H5O H24 H9 H 0 1 N N N -7.783 13.623 65.747 -9.906 1.844 2.287 H24 H5O 53 H5O H25 H10 H 0 1 N N N -9.645 12.398 69.279 -11.773 4.043 -0.702 H25 H5O 54 H5O H16 H11 H 0 1 N N N 6.350 9.018 60.196 7.836 1.657 -2.032 H16 H5O 55 H5O H17 H12 H 0 1 N N N 4.150 8.699 63.828 6.297 0.239 1.706 H17 H5O 56 H5O H15 H13 H 0 1 N N N 2.208 8.833 62.578 4.585 -0.588 0.672 H15 H5O 57 H5O H4 H14 H 0 1 N N N 0.259 7.936 59.212 2.408 -1.926 -2.212 H4 H5O 58 H5O H H15 H 0 1 N N N -0.081 9.767 61.661 1.757 0.072 0.004 H H5O 59 H5O H8 H16 H 0 1 N N N 1.002 12.366 59.508 0.748 2.411 -2.416 H8 H5O 60 H5O H10 H17 H 0 1 N N N -0.079 12.161 60.928 -0.112 1.641 -1.062 H10 H5O 61 H5O H9 H18 H 0 1 N N N 1.558 11.421 60.931 1.566 2.194 -0.850 H9 H5O 62 H5O H3 H19 H 0 1 N N N 0.379 6.086 60.848 3.529 -3.204 -0.427 H3 H5O 63 H5O H14 H20 H 0 1 N N N -0.229 6.569 63.040 3.225 -2.437 1.815 H14 H5O 64 H5O H2 H21 H 0 1 N N N -1.755 6.731 59.818 1.162 -3.714 -0.900 H2 H5O 65 H5O H11 H22 H 0 1 N N N -1.718 4.898 61.487 2.353 -4.874 0.984 H11 H5O 66 H5O H12 H23 H 0 1 N N N -2.121 6.093 62.767 1.691 -3.660 2.105 H12 H5O 67 H5O H13 H24 H 0 1 N N N -4.028 5.029 61.899 0.300 -5.598 1.968 H13 H5O 68 H5O H1 H25 H 0 1 N N N -2.013 9.124 59.387 -0.063 -1.749 -1.637 H1 H5O 69 H5O H22 H26 H 0 1 N N N -5.398 10.169 63.802 -2.764 0.589 1.790 H22 H5O 70 H5O H26 H27 H 0 1 N N N -10.050 9.812 65.977 -8.420 1.821 -1.742 H26 H5O 71 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H5O O4 C16 SING N N 1 H5O O4 C17 SING N N 2 H5O C16 C15 SING N N 3 H5O N2 N1 DOUB Y N 4 H5O N2 N SING Y N 5 H5O O C SING N N 6 H5O O C1 SING N N 7 H5O N1 C8 SING Y N 8 H5O C6 N SING N N 9 H5O C6 C1 SING N N 10 H5O C6 C5 SING N N 11 H5O C17 C18 SING N N 12 H5O C2 C1 SING N N 13 H5O C2 S SING N N 14 H5O C2 O1 SING N N 15 H5O N C7 SING Y N 16 H5O C15 S SING N N 17 H5O C15 C19 SING N N 18 H5O C3 C5 SING N N 19 H5O C3 O1 SING N N 20 H5O C3 C4 SING N N 21 H5O C5 O3 SING N N 22 H5O C8 C7 DOUB Y N 23 H5O C8 C9 SING N N 24 H5O C10 C9 DOUB Y N 25 H5O C10 C11 SING Y N 26 H5O O2 C4 SING N N 27 H5O F C11 SING N N 28 H5O C18 C19 SING N N 29 H5O C18 N3 SING N N 30 H5O C19 O5 SING N N 31 H5O C9 C14 SING Y N 32 H5O C11 C12 DOUB Y N 33 H5O N3 N5 SING Y N 34 H5O N3 C20 SING Y N 35 H5O N5 N4 DOUB Y N 36 H5O C14 C13 DOUB Y N 37 H5O C12 C13 SING Y N 38 H5O C12 F1 SING N N 39 H5O C20 C21 DOUB Y N 40 H5O C13 F2 SING N N 41 H5O N4 C21 SING Y N 42 H5O C21 C22 SING N N 43 H5O C22 C23 DOUB Y N 44 H5O C22 C25 SING Y N 45 H5O C23 N6 SING Y N 46 H5O C25 N7 DOUB Y N 47 H5O N6 C24 DOUB Y N 48 H5O N7 C24 SING Y N 49 H5O C18 H6 SING N N 50 H5O C17 H21 SING N N 51 H5O C17 H20 SING N N 52 H5O C16 H18 SING N N 53 H5O C16 H19 SING N N 54 H5O C15 H5 SING N N 55 H5O C19 H7 SING N N 56 H5O C20 H23 SING N N 57 H5O C23 H24 SING N N 58 H5O C24 H25 SING N N 59 H5O C10 H16 SING N N 60 H5O C14 H17 SING N N 61 H5O C7 H15 SING N N 62 H5O C6 H4 SING N N 63 H5O C1 H SING N N 64 H5O C H8 SING N N 65 H5O C H10 SING N N 66 H5O C H9 SING N N 67 H5O C5 H3 SING N N 68 H5O O3 H14 SING N N 69 H5O C3 H2 SING N N 70 H5O C4 H11 SING N N 71 H5O C4 H12 SING N N 72 H5O O2 H13 SING N N 73 H5O C2 H1 SING N N 74 H5O O5 H22 SING N N 75 H5O C25 H26 SING N N 76 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H5O InChI InChI 1.03 "InChI=1S/C26H27F3N8O6S/c1-41-25-22(37-7-16(32-35-37)12-2-14(27)21(29)15(28)3-12)24(40)19(8-38)43-26(25)44-20-10-42-9-18(23(20)39)36-6-17(33-34-36)13-4-30-11-31-5-13/h2-7,11,18-20,22-26,38-40H,8-10H2,1H3/t18-,19+,20+,22-,23+,24-,25+,26-/m0/s1" H5O InChIKey InChI 1.03 XUWUKOCAMCFANQ-COQUQQDQSA-N H5O SMILES_CANONICAL CACTVS 3.385 "CO[C@H]1[C@@H](O[C@H](CO)[C@H](O)[C@@H]1n2cc(nn2)c3cc(F)c(F)c(F)c3)S[C@@H]4COC[C@@H]([C@H]4O)n5cc(nn5)c6cncnc6" H5O SMILES CACTVS 3.385 "CO[CH]1[CH](O[CH](CO)[CH](O)[CH]1n2cc(nn2)c3cc(F)c(F)c(F)c3)S[CH]4COC[CH]([CH]4O)n5cc(nn5)c6cncnc6" H5O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CO[C@@H]1[C@H]([C@H]([C@H](O[C@H]1S[C@@H]2COC[C@@H]([C@H]2O)n3cc(nn3)c4cncnc4)CO)O)n5cc(nn5)c6cc(c(c(c6)F)F)F" H5O SMILES "OpenEye OEToolkits" 2.0.7 "COC1C(C(C(OC1SC2COCC(C2O)n3cc(nn3)c4cncnc4)CO)O)n5cc(nn5)c6cc(c(c(c6)F)F)F" # _pdbx_chem_comp_identifier.comp_id H5O _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R},6~{S})-2-(hydroxymethyl)-5-methoxy-6-[(3~{R},4~{R},5~{S})-4-oxidanyl-5-(4-pyrimidin-5-yl-1,2,3-triazol-1-yl)oxan-3-yl]sulfanyl-4-[4-[3,4,5-tris(fluoranyl)phenyl]-1,2,3-triazol-1-yl]oxan-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H5O "Create component" 2020-11-13 PDBJ H5O "Initial release" 2021-06-23 RCSB ##