data_H60 # _chem_comp.id H60 _chem_comp.name "(2~{S})-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(~{E})-3-phenylprop-2-enoyl]amino]hexanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H31 N3 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-17 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 413.510 _chem_comp.one_letter_code ? _chem_comp.three_letter_code H60 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DGF _chem_comp.pdbx_subcomponent_list "TCA NLE ELF" _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H60 C20 C5 C 0 1 N N N N N N -11.085 11.880 69.285 -2.333 0.145 -0.370 C1 TCA 1 H60 O29 O3 O 0 1 N N N N N N -11.523 12.013 68.193 -2.197 0.444 -1.542 O TCA 2 H60 C21 C6 C 0 1 N N N N N N -10.740 10.483 69.831 -3.608 -0.398 0.104 C2 TCA 3 H60 C22 C7 C 0 1 N N N N N N -10.170 9.610 68.982 -4.632 -0.563 -0.757 C3 TCA 4 H60 C23 C21 C 0 1 Y N N N N N -9.962 8.252 69.759 -5.913 -1.110 -0.281 C31 TCA 5 H60 C24 C8 C 0 1 Y N N N N N -9.560 8.271 71.112 -6.978 -1.282 -1.171 C32 TCA 6 H60 C25 C22 C 0 1 Y N N N N N -9.389 7.064 71.816 -8.175 -1.794 -0.717 C33 TCA 7 H60 C26 C9 C 0 1 Y N N N N N -9.635 5.848 71.177 -8.324 -2.138 0.615 C34 TCA 8 H60 C27 C23 C 0 1 Y N N N N N -10.052 5.828 69.826 -7.275 -1.970 1.502 C35 TCA 9 H60 C28 C10 C 0 1 Y N N N N N -10.224 7.029 69.121 -6.070 -1.465 1.062 C36 TCA 10 H60 N19 N3 N 0 1 N N N N N N -10.906 13.029 70.146 -1.309 0.310 0.491 N NLE 11 H60 C14 C18 C 0 1 N N S N N N -11.273 14.349 69.699 -0.034 0.854 0.017 CA NLE 12 H60 C13 C2 C 0 1 N N N N N N -10.511 14.837 68.448 1.077 0.389 0.923 C NLE 13 H60 O30 O4 O 0 1 N N N N N N -9.317 14.777 68.383 0.829 -0.325 1.870 O NLE 14 H60 C15 C3 C 0 1 N N N N N N -11.108 15.308 70.873 -0.096 2.382 0.028 CB NLE 15 H60 C16 C19 C 0 1 N N N N N N -11.611 14.609 72.162 -1.140 2.857 -0.985 CG NLE 16 H60 C17 C4 C 0 1 N N N N N N -12.188 15.564 73.195 -1.202 4.386 -0.974 CD NLE 17 H60 C18 C20 C 0 1 N N N N N N -11.284 15.721 74.423 -2.247 4.861 -1.987 CE NLE 18 H60 C07 C16 C 0 1 N N N N N N -8.620 12.326 64.587 4.664 -3.251 -0.752 C6 ELF 19 H60 C03 C12 C 0 1 N N S N N N -10.616 15.850 66.140 3.428 0.318 1.559 C11 ELF 20 H60 C06 C15 C 0 1 N N N N N N -9.388 13.139 65.524 4.488 -2.181 0.333 C13 ELF 21 H60 C10 C1 C 0 1 N N N N N N -11.417 12.649 63.973 5.874 -0.770 -1.168 C15 ELF 22 H60 C04 C13 C 0 1 N N N N N N -10.979 14.933 64.944 4.739 0.265 0.772 C17 ELF 23 H60 C02 C11 C 0 1 N N N N N N -11.077 17.270 65.848 3.572 1.279 2.711 C24 ELF 24 H60 C05 C14 C 0 1 N N S N N N -10.759 13.381 65.232 4.636 -0.804 -0.318 C25 ELF 25 H60 C08 C17 C 0 1 N N N N N N -9.341 11.145 64.044 6.114 -3.224 -1.237 C27 ELF 26 H60 N12 N1 N 0 1 N N N N N N -11.294 15.373 67.344 2.348 0.769 0.679 N3 ELF 27 H60 N09 N2 N 0 1 N N N N N N -10.648 11.488 63.352 6.510 -1.865 -1.586 N4 ELF 28 H60 O01 O1 O 0 1 N N N N N N -10.609 17.854 64.896 2.847 2.242 2.788 O3 ELF 29 H60 O11 O2 O 0 1 N N N N N N -12.480 13.014 63.541 6.320 0.310 -1.491 O4 ELF 30 H60 H6 H6 H 0 1 N N N N N N -10.948 10.214 70.856 -3.727 -0.668 1.143 H2 TCA 31 H60 H8 H8 H 0 1 N N N N N N -9.903 9.803 67.954 -4.512 -0.294 -1.796 H3 TCA 32 H60 H10 H10 H 0 1 N N N N N N -9.383 9.214 71.608 -6.863 -1.013 -2.211 H32 TCA 33 H60 H30 H30 H 0 1 N N N N N N -9.068 7.079 72.847 -8.998 -1.927 -1.403 H33 TCA 34 H60 H11 H11 H 0 1 N N N N N N -9.507 4.921 71.715 -9.264 -2.539 0.964 H34 TCA 35 H60 H31 H31 H 0 1 N N N N N N -10.239 4.885 69.335 -7.399 -2.240 2.540 H35 TCA 36 H60 H12 H12 H 0 1 N N N N N N -10.556 7.013 68.093 -5.251 -1.339 1.755 H36 TCA 37 H60 H33 H33 H 0 1 N N N N N N -10.523 12.906 71.062 -1.416 0.068 1.424 HN2 NLE 38 H60 H24 H24 H 0 1 N N N N N N -12.342 14.337 69.438 0.155 0.505 -0.998 HA NLE 39 H60 H2 H2 H 0 1 N N N N N N -10.047 15.574 70.987 -0.373 2.728 1.024 HB2 NLE 40 H60 H3 H3 H 0 1 N N N N N N -11.697 16.219 70.692 0.880 2.787 -0.240 HB3 NLE 41 H60 H25 H25 H 0 1 N N N N N N -12.393 13.888 71.882 -0.864 2.512 -1.981 HG2 NLE 42 H60 H26 H26 H 0 1 N N N N N N -10.765 14.074 72.619 -2.116 2.452 -0.718 HG3 NLE 43 H60 H4 H4 H 0 1 N N N N N N -12.321 16.551 72.727 -1.479 4.731 0.022 HD2 NLE 44 H60 H5 H5 H 0 1 N N N N N N -13.165 15.179 73.524 -0.227 4.791 -1.241 HD3 NLE 45 H60 H27 H27 H 0 1 N N N N N N -11.749 16.420 75.134 -1.970 4.516 -2.983 HE1 NLE 46 H60 H28 H28 H 0 1 N N N N N N -11.149 14.742 74.906 -3.222 4.456 -1.719 HE2 NLE 47 H60 H29 H29 H 0 1 N N N N N N -10.305 16.113 74.110 -2.291 5.950 -1.979 HE3 NLE 48 H60 H20 H20 H 0 1 N N N N N N -7.719 11.967 65.106 4.435 -4.233 -0.338 H1 ELF 49 H60 H21 H21 H 0 1 N N N N N N -8.326 12.965 63.741 3.994 -3.040 -1.585 H2 ELF 50 H60 H14 H14 H 0 1 N N N N N N -9.526 15.840 66.285 3.194 -0.675 1.942 H3 ELF 51 H60 H18 H18 H 0 1 N N N N N N -9.346 12.638 66.502 3.499 -2.271 0.780 H4 ELF 52 H60 H19 H19 H 0 1 N N N N N N -8.890 14.118 65.591 5.251 -2.309 1.101 H5 ELF 53 H60 H15 H15 H 0 1 N N N N N N -10.353 15.218 64.086 4.926 1.235 0.313 H6 ELF 54 H60 H16 H16 H 0 1 N N N N N N -12.038 15.092 64.694 5.559 0.018 1.447 H7 ELF 55 H60 H13 H13 H 0 1 N N N N N N -11.810 17.750 66.480 4.324 1.107 3.467 H8 ELF 56 H60 H17 H17 H 0 1 N N N N N N -11.369 13.124 66.111 3.765 -0.602 -0.941 H9 ELF 57 H60 H22 H22 H 0 1 N N N N N N -9.559 10.459 64.876 6.765 -3.596 -0.446 H10 ELF 58 H60 H23 H23 H 0 1 N N N N N N -8.686 10.643 63.317 6.212 -3.862 -2.115 H11 ELF 59 H60 H1 H1 H 0 1 N N N N N N -12.291 15.415 67.409 2.546 1.340 -0.079 H12 ELF 60 H60 H32 H32 H 0 1 N N N N N N -10.979 10.991 62.550 7.284 -1.751 -2.159 H15 ELF 61 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H60 N09 C10 SING N N 1 H60 N09 C08 SING N N 2 H60 O11 C10 DOUB N N 3 H60 C10 C05 SING N N 4 H60 C08 C07 SING N N 5 H60 C07 C06 SING N N 6 H60 O01 C02 DOUB N N 7 H60 C04 C05 SING N N 8 H60 C04 C03 SING N N 9 H60 C05 C06 SING N N 10 H60 C02 C03 SING N N 11 H60 C03 N12 SING N N 12 H60 N12 C13 SING N N 13 H60 O29 C20 DOUB N N 14 H60 O30 C13 DOUB N N 15 H60 C13 C14 SING N N 16 H60 C22 C23 SING N N 17 H60 C22 C21 DOUB N E 18 H60 C28 C23 DOUB Y N 19 H60 C28 C27 SING Y N 20 H60 C20 C21 SING N N 21 H60 C20 N19 SING N N 22 H60 C14 N19 SING N N 23 H60 C14 C15 SING N N 24 H60 C23 C24 SING Y N 25 H60 C27 C26 DOUB Y N 26 H60 C15 C16 SING N N 27 H60 C24 C25 DOUB Y N 28 H60 C26 C25 SING Y N 29 H60 C16 C17 SING N N 30 H60 C17 C18 SING N N 31 H60 N12 H1 SING N N 32 H60 C15 H2 SING N N 33 H60 C15 H3 SING N N 34 H60 C17 H4 SING N N 35 H60 C17 H5 SING N N 36 H60 C21 H6 SING N N 37 H60 C22 H8 SING N N 38 H60 C24 H10 SING N N 39 H60 C26 H11 SING N N 40 H60 C28 H12 SING N N 41 H60 C02 H13 SING N N 42 H60 C03 H14 SING N N 43 H60 C04 H15 SING N N 44 H60 C04 H16 SING N N 45 H60 C05 H17 SING N N 46 H60 C06 H18 SING N N 47 H60 C06 H19 SING N N 48 H60 C07 H20 SING N N 49 H60 C07 H21 SING N N 50 H60 C08 H22 SING N N 51 H60 C08 H23 SING N N 52 H60 C14 H24 SING N N 53 H60 C16 H25 SING N N 54 H60 C16 H26 SING N N 55 H60 C18 H27 SING N N 56 H60 C18 H28 SING N N 57 H60 C18 H29 SING N N 58 H60 C25 H30 SING N N 59 H60 C27 H31 SING N N 60 H60 N09 H32 SING N N 61 H60 N19 H33 SING N N 62 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H60 InChI InChI 1.03 "InChI=1S/C23H31N3O4/c1-2-3-11-20(26-21(28)13-12-17-8-5-4-6-9-17)23(30)25-19(16-27)15-18-10-7-14-24-22(18)29/h4-6,8-9,12-13,16,18-20H,2-3,7,10-11,14-15H2,1H3,(H,24,29)(H,25,30)(H,26,28)/b13-12+/t18-,19-,20-/m0/s1" H60 InChIKey InChI 1.03 MBIWELOVLSUPFE-GITLDSMSSA-N H60 SMILES_CANONICAL CACTVS 3.385 "CCCC[C@H](NC(=O)/C=C/c1ccccc1)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O" H60 SMILES CACTVS 3.385 "CCCC[CH](NC(=O)C=Cc1ccccc1)C(=O)N[CH](C[CH]2CCCNC2=O)C=O" H60 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCC[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)/C=C/c2ccccc2" H60 SMILES "OpenEye OEToolkits" 2.0.7 "CCCCC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C=Cc2ccccc2" # _pdbx_chem_comp_identifier.comp_id H60 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]-2-[[(~{E})-3-phenylprop-2-enoyl]amino]hexanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H60 "Create component" 2020-11-17 PDBJ H60 "Modify component comp_id" 2020-11-18 PDBJ H60 "Initial release" 2021-11-24 RCSB H60 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id H60 _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #