data_H6L # _chem_comp.id H6L _chem_comp.name "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-4-nitro-benzamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H37 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-19 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 531.601 _chem_comp.one_letter_code ? _chem_comp.three_letter_code H6L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DGI _chem_comp.pdbx_subcomponent_list "4NB VAL LEU ELF" _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H6L C26 C9 C 0 1 N N N N N N -7.642 16.648 39.782 4.247 -0.658 1.153 C 4NB 1 H6L O36 O5 O 0 1 N N N N N N -7.792 17.271 40.781 4.360 -1.333 2.158 O2 4NB 2 H6L C27 C22 C 0 1 Y N N N N N -6.334 16.893 38.935 5.453 -0.140 0.472 C1 4NB 3 H6L C28 C10 C 0 1 Y N N N N N -5.378 15.963 38.462 6.721 -0.426 0.979 C2 4NB 4 H6L C29 C23 C 0 1 Y N N N N N -4.281 16.462 37.702 7.842 0.060 0.337 C3 4NB 5 H6L C30 C24 C 0 1 Y N N N N N -4.171 17.841 37.417 7.711 0.828 -0.806 C4 4NB 6 H6L C34 C25 C 0 1 Y N N N N N -5.139 18.734 37.891 6.456 1.115 -1.313 C5 4NB 7 H6L C35 C26 C 0 1 Y N N N N N -6.206 18.250 38.637 5.327 0.631 -0.685 C6 4NB 8 H6L N31 N5 N 1 1 N N N N N N -3.093 18.476 36.644 8.917 1.346 -1.489 N 4NB 9 H6L O32 O3 O -1 1 N N N N N N -2.184 17.730 35.869 8.805 2.023 -2.495 "O1'" 4NB 10 H6L O33 O4 O 0 1 N N N N N N -2.995 19.655 36.675 10.023 1.096 -1.044 "O2'" 4NB 11 H6L N25 N4 N 0 1 N N N N N N -8.755 15.774 39.362 3.024 -0.386 0.658 N VAL 12 H6L C21 C6 C 0 1 N N S N N N -9.877 15.819 40.285 1.829 -0.904 1.331 CA VAL 13 H6L C20 C5 C 0 1 N N N N N N -10.289 14.481 40.846 0.702 -1.014 0.337 C VAL 14 H6L O37 O6 O 0 1 N N N N N N -10.532 13.562 40.137 0.878 -0.692 -0.819 O VAL 15 H6L C22 C7 C 0 1 N N N N N N -11.101 16.436 39.541 1.425 0.049 2.457 CB VAL 16 H6L C24 C8 C 0 1 N N N N N N -10.702 17.581 38.571 2.569 0.162 3.466 CG1 VAL 17 H6L C23 C21 C 0 1 N N N N N N -12.216 16.885 40.512 1.122 1.431 1.873 CG2 VAL 18 H6L N19 N3 N 0 1 N N N N N N -10.396 14.418 42.316 -0.503 -1.471 0.733 N LEU 19 H6L C14 C18 C 0 1 N N S N N N -10.805 13.224 43.000 -1.629 -1.475 -0.205 CA LEU 20 H6L C13 C2 C 0 1 N N N N N N -12.316 13.129 42.742 -2.920 -1.336 0.560 C LEU 21 H6L O38 O7 O 0 1 N N N N N N -13.042 14.043 42.953 -2.954 -1.595 1.745 O LEU 22 H6L C15 C3 C 0 1 N N N N N N -10.509 13.406 44.491 -1.638 -2.791 -0.985 CB LEU 23 H6L C16 C19 C 0 1 N N N N N N -8.947 13.498 44.772 -2.727 -2.740 -2.059 CG LEU 24 H6L C17 C4 C 0 1 N N N N N N -8.186 12.316 44.127 -2.354 -1.696 -3.113 CD1 LEU 25 H6L C18 C20 C 0 1 N N N N N N -8.650 13.589 46.271 -2.853 -4.112 -2.723 CD2 LEU 26 H6L C07 C16 C 0 1 N N N N N N -14.365 14.640 38.518 -4.900 3.724 0.943 C6 ELF 27 H6L C03 C12 C 0 1 N N S N N N -14.287 11.782 41.947 -5.264 -0.687 0.691 C11 ELF 28 H6L C06 C15 C 0 1 N N N N N N -14.565 13.737 39.645 -5.330 2.264 1.137 C13 ELF 29 H6L C10 C1 C 0 1 N N N N N N -14.100 11.843 37.988 -6.323 2.504 -1.126 C15 ELF 30 H6L C04 C13 C 0 1 N N N N N N -14.510 11.412 40.478 -6.176 0.261 -0.092 C17 ELF 31 H6L C02 C11 C 0 1 N N N N N N -14.818 10.712 42.860 -5.976 -1.996 0.917 C24 ELF 32 H6L C05 C14 C 0 1 N N S N N N -13.925 12.470 39.440 -5.490 1.620 -0.243 C25 ELF 33 H6L C08 C17 C 0 1 N N N N N N -15.091 14.145 37.322 -6.056 4.495 0.306 C27 ELF 34 H6L N12 N1 N 0 1 N N N N N N -12.846 11.885 42.197 -4.036 -0.923 -0.072 N3 ELF 35 H6L N09 N2 N 0 1 N N N N N N -14.707 12.726 36.896 -6.548 3.794 -0.874 N4 ELF 36 H6L O01 O1 O 0 1 N N N N N N -15.988 10.540 42.868 -5.505 -3.021 0.485 O3 ELF 37 H6L O11 O2 O 0 1 N N N N N N -13.769 10.732 37.760 -6.817 2.019 -2.121 O4 ELF 38 H6L H12 H12 H 0 1 N N N N N N -5.477 14.908 38.671 6.826 -1.025 1.871 H2 4NB 39 H6L H32 H32 H 0 1 N N N N N N -3.526 15.779 37.340 8.825 -0.159 0.729 H3 4NB 40 H6L H33 H33 H 0 1 N N N N N N -5.057 19.790 37.679 6.360 1.716 -2.206 H5 4NB 41 H6L H34 H34 H 0 1 N N N N N N -6.955 18.941 38.995 4.348 0.855 -1.082 H6 4NB 42 H6L H37 H37 H 0 1 N N N N N N -8.739 15.213 38.534 2.934 0.153 -0.143 H VAL 43 H6L H7 H7 H 0 1 N N N N N N -9.625 16.484 41.124 2.045 -1.888 1.747 HA VAL 44 H6L H8 H8 H 0 1 N N N N N N -11.527 15.633 38.921 0.536 -0.336 2.957 HB VAL 45 H6L H9 H9 H 0 1 N N N N N N -11.603 17.975 38.078 2.281 0.840 4.269 HG11 VAL 46 H6L H10 H10 H 0 1 N N N N N N -10.212 18.387 39.137 2.785 -0.822 3.882 HG12 VAL 47 H6L H11 H11 H 0 1 N N N N N N -10.008 17.192 37.811 3.458 0.547 2.966 HG13 VAL 48 H6L H29 H29 H 0 1 N N N N N N -12.475 16.053 41.184 0.307 1.351 1.154 HG21 VAL 49 H6L H30 H30 H 0 1 N N N N N N -11.862 17.740 41.107 0.834 2.109 2.675 HG22 VAL 50 H6L H31 H31 H 0 1 N N N N N N -13.105 17.182 39.937 2.011 1.816 1.373 HG23 VAL 51 H6L H36 H36 H 0 1 N N N N N N -10.177 15.233 42.853 -0.624 -1.797 1.638 H2 LEU 52 H6L H24 H24 H 0 1 N N N N N N -10.292 12.332 42.611 -1.526 -0.641 -0.899 HA LEU 53 H6L H2 H2 H 0 1 N N N N N N -10.989 14.332 44.840 -0.667 -2.940 -1.459 HB2 LEU 54 H6L H3 H3 H 0 1 N N N N N N -10.921 12.549 45.044 -1.839 -3.617 -0.303 HB3 LEU 55 H6L H25 H25 H 0 1 N N N N N N -8.586 14.424 44.300 -3.677 -2.469 -1.599 HG LEU 56 H6L H4 H4 H 0 1 N N N N N N -7.111 12.411 44.341 -1.441 -2.003 -3.623 HD11 LEU 57 H6L H5 H5 H 0 1 N N N N N N -8.560 11.369 44.543 -3.163 -1.607 -3.839 HD12 LEU 58 H6L H6 H6 H 0 1 N N N N N N -8.346 12.327 43.039 -2.193 -0.732 -2.629 HD13 LEU 59 H6L H26 H26 H 0 1 N N N N N N -9.202 14.436 46.704 -3.118 -4.856 -1.972 HD21 LEU 60 H6L H27 H27 H 0 1 N N N N N N -8.963 12.657 46.764 -3.629 -4.076 -3.488 HD22 LEU 61 H6L H28 H28 H 0 1 N N N N N N -7.571 13.739 46.422 -1.902 -4.383 -3.182 HD23 LEU 62 H6L H20 H20 H 0 1 N N N N N N -13.291 14.702 38.290 -4.655 4.164 1.909 H1 ELF 63 H6L H21 H21 H 0 1 N N N N N N -14.742 15.639 38.783 -4.027 3.764 0.291 H2 ELF 64 H6L H14 H14 H 0 1 N N N N N N -14.783 12.739 42.164 -5.014 -0.238 1.653 H3 ELF 65 H6L H18 H18 H 0 1 N N N N N N -14.149 14.202 40.551 -4.568 1.730 1.705 H4 ELF 66 H6L H19 H19 H 0 1 N N N N N N -15.644 13.572 39.780 -6.279 2.229 1.671 H5 ELF 67 H6L H15 H15 H 0 1 N N N N N N -15.593 11.323 40.306 -6.374 -0.158 -1.079 H6 ELF 68 H6L H16 H16 H 0 1 N N N N N N -14.027 10.442 40.290 -7.116 0.386 0.445 H7 ELF 69 H6L H13 H13 H 0 1 N N N N N N -14.159 10.125 43.482 -6.906 -2.017 1.464 H8 ELF 70 H6L H17 H17 H 0 1 N N N N N N -12.846 12.565 39.634 -4.508 1.480 -0.693 H9 ELF 71 H6L H22 H22 H 0 1 N N N N N N -14.879 14.826 36.484 -6.866 4.593 1.030 H10 ELF 72 H6L H23 H23 H 0 1 N N N N N N -16.169 14.159 37.543 -5.711 5.486 0.015 H11 ELF 73 H6L H1 H1 H 0 1 N N N N N N -12.238 11.116 41.997 -4.027 -0.783 -1.031 H12 ELF 74 H6L H35 H35 H 0 1 N N N N N N -14.844 12.396 35.962 -7.072 4.298 -1.516 H15 ELF 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H6L O32 N31 SING N N 1 H6L N31 O33 DOUB N N 2 H6L N31 C30 SING N N 3 H6L N09 C08 SING N N 4 H6L N09 C10 SING N N 5 H6L C08 C07 SING N N 6 H6L C30 C29 DOUB Y N 7 H6L C30 C34 SING Y N 8 H6L C29 C28 SING Y N 9 H6L O11 C10 DOUB N N 10 H6L C34 C35 DOUB Y N 11 H6L C10 C05 SING N N 12 H6L C28 C27 DOUB Y N 13 H6L C07 C06 SING N N 14 H6L C24 C22 SING N N 15 H6L C35 C27 SING Y N 16 H6L C27 C26 SING N N 17 H6L N25 C26 SING N N 18 H6L N25 C21 SING N N 19 H6L C05 C06 SING N N 20 H6L C05 C04 SING N N 21 H6L C22 C21 SING N N 22 H6L C22 C23 SING N N 23 H6L C26 O36 DOUB N N 24 H6L O37 C20 DOUB N N 25 H6L C21 C20 SING N N 26 H6L C04 C03 SING N N 27 H6L C20 N19 SING N N 28 H6L C03 N12 SING N N 29 H6L C03 C02 SING N N 30 H6L N12 C13 SING N N 31 H6L N19 C14 SING N N 32 H6L C13 O38 DOUB N N 33 H6L C13 C14 SING N N 34 H6L C02 O01 DOUB N N 35 H6L C14 C15 SING N N 36 H6L C17 C16 SING N N 37 H6L C15 C16 SING N N 38 H6L C16 C18 SING N N 39 H6L N12 H1 SING N N 40 H6L C15 H2 SING N N 41 H6L C15 H3 SING N N 42 H6L C17 H4 SING N N 43 H6L C17 H5 SING N N 44 H6L C17 H6 SING N N 45 H6L C21 H7 SING N N 46 H6L C22 H8 SING N N 47 H6L C24 H9 SING N N 48 H6L C24 H10 SING N N 49 H6L C24 H11 SING N N 50 H6L C28 H12 SING N N 51 H6L C02 H13 SING N N 52 H6L C03 H14 SING N N 53 H6L C04 H15 SING N N 54 H6L C04 H16 SING N N 55 H6L C05 H17 SING N N 56 H6L C06 H18 SING N N 57 H6L C06 H19 SING N N 58 H6L C07 H20 SING N N 59 H6L C07 H21 SING N N 60 H6L C08 H22 SING N N 61 H6L C08 H23 SING N N 62 H6L C14 H24 SING N N 63 H6L C16 H25 SING N N 64 H6L C18 H26 SING N N 65 H6L C18 H27 SING N N 66 H6L C18 H28 SING N N 67 H6L C23 H29 SING N N 68 H6L C23 H30 SING N N 69 H6L C23 H31 SING N N 70 H6L C29 H32 SING N N 71 H6L C34 H33 SING N N 72 H6L C35 H34 SING N N 73 H6L N09 H35 SING N N 74 H6L N19 H36 SING N N 75 H6L N25 H37 SING N N 76 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H6L InChI InChI 1.03 "InChI=1S/C26H37N5O7/c1-15(2)12-21(25(35)28-19(14-32)13-18-6-5-11-27-23(18)33)29-26(36)22(16(3)4)30-24(34)17-7-9-20(10-8-17)31(37)38/h7-10,14-16,18-19,21-22H,5-6,11-13H2,1-4H3,(H,27,33)(H,28,35)(H,29,36)(H,30,34)/t18-,19-,21-,22-/m0/s1" H6L InChIKey InChI 1.03 UUOJCIYWLMPKQE-LGGPRVQUSA-N H6L SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)[C@@H](NC(=O)c1ccc(cc1)[N+]([O-])=O)C(C)C)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O" H6L SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)[CH](NC(=O)c1ccc(cc1)[N+]([O-])=O)C(C)C)C(=O)N[CH](C[CH]2CCCNC2=O)C=O" H6L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)c2ccc(cc2)[N+](=O)[O-]" H6L SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)c2ccc(cc2)[N+](=O)[O-]" # _pdbx_chem_comp_identifier.comp_id H6L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{S})-3-methyl-1-[[(2~{S})-4-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]amino]pentan-2-yl]amino]-1-oxidanylidene-butan-2-yl]-4-nitro-benzamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H6L "Create component" 2020-11-19 PDBJ H6L "Initial release" 2021-11-24 RCSB H6L "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id H6L _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C02 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #