data_H6X # _chem_comp.id H6X _chem_comp.name "5-[2-(3,5-dimethoxyphenyl)ethyl]-N-[3-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]pyrimidin-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C31 H42 N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-11-20 _chem_comp.pdbx_modified_date 2021-01-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 546.704 _chem_comp.one_letter_code ? _chem_comp.three_letter_code H6X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DHL _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H6X C1 C1 C 0 1 N N N -1.411 -2.227 14.146 -5.783 -0.343 -0.750 C1 H6X 1 H6X C2 C2 C 0 1 Y N N -0.704 -3.505 14.453 -7.094 0.373 -0.547 C2 H6X 2 H6X C3 C3 C 0 1 Y N N -1.371 -4.737 14.537 -7.115 1.748 -0.411 C3 H6X 3 H6X C4 C4 C 0 1 Y N N -0.668 -5.921 14.795 -8.320 2.409 -0.224 C4 H6X 4 H6X C5 C5 C 0 1 Y N N 0.711 -5.887 14.963 -9.504 1.690 -0.174 C5 H6X 5 H6X C6 C6 C 0 1 Y N N 1.376 -4.662 14.883 -9.480 0.311 -0.312 C6 H6X 6 H6X C7 C7 C 0 1 Y N N 0.676 -3.480 14.639 -8.273 -0.346 -0.504 C7 H6X 7 H6X O8 O1 O 0 1 N N N -1.357 -7.134 14.870 -8.340 3.762 -0.089 O8 H6X 8 H6X O9 O2 O 0 1 N N N 2.755 -4.574 15.061 -10.639 -0.397 -0.263 O9 H6X 9 H6X C10 C8 C 0 1 N N N 3.320 -5.871 15.088 -11.845 0.344 -0.067 C10 H6X 10 H6X C11 C9 C 0 1 N N N -0.445 -8.234 14.898 -9.616 4.376 0.101 C11 H6X 11 H6X N12 N1 N 0 1 N N N -4.616 3.339 14.916 -0.352 -3.372 -0.132 N12 H6X 12 H6X C13 C10 C 0 1 Y N N -5.124 4.034 13.810 0.853 -2.660 -0.068 C13 H6X 13 H6X C14 C11 C 0 1 Y N N -4.860 3.616 12.506 0.977 -1.583 0.800 C14 H6X 14 H6X C15 C12 C 0 1 Y N N -5.394 4.339 11.432 2.170 -0.883 0.866 C15 H6X 15 H6X C16 C13 C 0 1 Y N N -6.198 5.493 11.635 3.243 -1.261 0.062 C16 H6X 16 H6X C17 C14 C 0 1 Y N N -6.453 5.915 12.943 3.114 -2.336 -0.804 C17 H6X 17 H6X C18 C15 C 0 1 Y N N -5.922 5.175 14.006 1.923 -3.034 -0.869 C18 H6X 18 H6X N19 N2 N 0 1 N N N -6.782 6.277 10.620 4.451 -0.553 0.127 N19 H6X 19 H6X C20 C16 C 0 1 N N N -7.588 7.459 10.985 4.285 0.819 -0.370 C20 H6X 20 H6X C21 C17 C 0 1 N N N -7.743 8.435 9.804 5.581 1.603 -0.149 C21 H6X 21 H6X C22 C18 C 0 1 N N N -8.355 7.757 8.562 6.725 0.907 -0.891 C22 H6X 22 H6X C23 C19 C 0 1 N N N -7.821 6.335 8.298 6.846 -0.535 -0.390 C23 H6X 23 H6X C24 C20 C 0 1 N N N -6.621 5.951 9.180 5.513 -1.257 -0.604 C24 H6X 24 H6X N25 N3 N 0 1 N N N -8.467 8.700 7.376 7.983 1.623 -0.637 N25 H6X 25 H6X C26 C21 C 0 1 N N N -9.832 9.364 7.235 9.055 1.132 -1.514 C26 H6X 26 H6X C27 C22 C 0 1 N N N -10.410 9.292 5.820 10.323 1.955 -1.275 C27 H6X 27 H6X N28 N4 N 0 1 N N N -10.070 7.995 5.108 10.713 1.850 0.139 N28 H6X 28 H6X C29 C23 C 0 1 N N N -8.604 7.602 5.080 9.640 2.341 1.015 C29 H6X 29 H6X C30 C24 C 0 1 N N N -7.742 8.376 6.075 8.372 1.518 0.776 C30 H6X 30 H6X C31 C25 C 0 1 N N N -11.021 6.871 5.325 11.083 0.470 0.481 C31 H6X 31 H6X C32 C26 C 0 1 Y N N -3.111 0.358 16.119 -2.693 -0.735 0.356 C32 H6X 32 H6X N33 N5 N 0 1 Y N N -3.923 1.326 13.735 -2.678 -3.418 0.093 N33 H6X 33 H6X C34 C27 C 0 1 Y N N -4.058 2.047 14.880 -1.556 -2.714 0.054 C34 H6X 34 H6X N35 N6 N 0 1 Y N N -3.656 1.591 16.088 -1.559 -1.395 0.182 N35 H6X 35 H6X C36 C28 C 0 1 Y N N -2.942 -0.453 15.017 -3.885 -1.441 0.408 C36 H6X 36 H6X C37 C29 C 0 1 Y N N -3.367 0.083 13.815 -3.845 -2.820 0.269 C37 H6X 37 H6X C38 C30 C 0 1 N N N -2.331 -1.796 15.238 -5.195 -0.725 0.610 C38 H6X 38 H6X O39 O3 O 0 1 N N N -5.079 3.844 10.164 2.294 0.172 1.716 O39 H6X 39 H6X C40 C31 C 0 1 N N N -3.746 3.300 10.198 1.153 0.502 2.511 C40 H6X 40 H6X H1 H1 H 0 1 N N N -0.660 -1.439 13.989 -5.949 -1.245 -1.340 H1 H6X 41 H6X H2 H2 H 0 1 N N N -1.998 -2.363 13.226 -5.089 0.312 -1.275 H2 H6X 42 H6X H3 H3 H 0 1 N N N -2.442 -4.773 14.401 -6.192 2.308 -0.450 H3 H6X 43 H6X H4 H4 H 0 1 N N N 1.261 -6.797 15.153 -10.443 2.203 -0.028 H4 H6X 44 H6X H5 H5 H 0 1 N N N 1.207 -2.541 14.594 -8.255 -1.420 -0.615 H5 H6X 45 H6X H6 H6 H 0 1 N N N 4.408 -5.795 15.229 -11.791 0.883 0.879 H6 H6X 46 H6X H7 H7 H 0 1 N N N 2.882 -6.444 15.919 -11.970 1.056 -0.884 H7 H6X 47 H6X H8 H8 H 0 1 N N N 3.108 -6.383 14.138 -12.693 -0.340 -0.048 H8 H6X 48 H6X H9 H9 H 0 1 N N N -1.009 -9.177 14.957 -10.255 4.158 -0.755 H9 H6X 49 H6X H10 H10 H 0 1 N N N 0.165 -8.228 13.982 -10.076 3.985 1.008 H10 H6X 50 H6X H11 H11 H 0 1 N N N 0.211 -8.144 15.776 -9.489 5.455 0.194 H11 H6X 51 H6X H12 H12 H 0 1 N N N -4.653 3.799 15.803 -0.343 -4.326 -0.306 H12 H6X 52 H6X H13 H13 H 0 1 N N N -4.250 2.743 12.326 0.144 -1.292 1.423 H13 H6X 53 H6X H14 H14 H 0 1 N N N -7.049 6.796 13.130 3.946 -2.629 -1.428 H14 H6X 54 H6X H15 H15 H 0 1 N N N -6.134 5.493 15.016 1.826 -3.874 -1.541 H15 H6X 55 H6X H16 H16 H 0 1 N N N -7.095 7.983 11.817 4.052 0.795 -1.434 H16 H6X 56 H6X H17 H17 H 0 1 N N N -8.586 7.124 11.303 3.471 1.304 0.169 H17 H6X 57 H6X H18 H18 H 0 1 N N N -6.751 8.830 9.539 5.463 2.617 -0.532 H18 H6X 58 H6X H19 H19 H 0 1 N N N -8.397 9.264 10.113 5.807 1.640 0.916 H19 H6X 59 H6X H20 H20 H 0 1 N N N -9.401 7.586 8.855 6.517 0.905 -1.961 H20 H6X 60 H6X H21 H21 H 0 1 N N N -8.634 5.618 8.487 7.631 -1.048 -0.945 H21 H6X 61 H6X H22 H22 H 0 1 N N N -7.512 6.270 7.244 7.092 -0.532 0.672 H22 H6X 62 H6X H23 H23 H 0 1 N N N -6.462 4.866 9.090 5.591 -2.279 -0.235 H23 H6X 63 H6X H24 H24 H 0 1 N N N -5.735 6.484 8.805 5.274 -1.271 -1.667 H24 H6X 64 H6X H26 H26 H 0 1 N N N -9.733 10.423 7.516 9.254 0.084 -1.293 H26 H6X 65 H6X H27 H27 H 0 1 N N N -10.533 8.866 7.922 8.748 1.232 -2.555 H27 H6X 66 H6X H28 H28 H 0 1 N N N -10.007 10.131 5.233 11.128 1.574 -1.903 H28 H6X 67 H6X H29 H29 H 0 1 N N N -11.505 9.381 5.883 10.131 2.999 -1.523 H29 H6X 68 H6X H31 H31 H 0 1 N N N -8.527 6.530 5.314 9.948 2.241 2.056 H31 H6X 69 H6X H32 H32 H 0 1 N N N -8.215 7.785 4.068 9.441 3.389 0.794 H32 H6X 70 H6X H33 H33 H 0 1 N N N -6.854 7.772 6.311 7.567 1.899 1.404 H33 H6X 71 H6X H34 H34 H 0 1 N N N -7.429 9.320 5.605 8.564 0.474 1.023 H34 H6X 72 H6X H35 H35 H 0 1 N N N -12.051 7.257 5.329 11.923 0.155 -0.138 H35 H6X 73 H6X H36 H36 H 0 1 N N N -10.909 6.134 4.516 11.367 0.420 1.532 H36 H6X 74 H6X H37 H37 H 0 1 N N N -10.806 6.390 6.291 10.233 -0.189 0.303 H37 H6X 75 H6X H38 H38 H 0 1 N N N -2.783 -0.021 17.076 -2.689 0.339 0.460 H38 H6X 76 H6X H39 H39 H 0 1 N N N -3.255 -0.500 12.913 -4.756 -3.399 0.301 H39 H6X 77 H6X H40 H40 H 0 1 N N N -3.141 -2.536 15.321 -5.029 0.176 1.200 H40 H6X 78 H6X H41 H41 H 0 1 N N N -1.762 -1.767 16.179 -5.890 -1.380 1.135 H41 H6X 79 H6X H42 H42 H 0 1 N N N -3.485 2.906 9.205 0.315 0.748 1.859 H42 H6X 80 H6X H43 H43 H 0 1 N N N -3.034 4.091 10.478 0.889 -0.349 3.138 H43 H6X 81 H6X H44 H44 H 0 1 N N N -3.700 2.487 10.938 1.387 1.360 3.142 H44 H6X 82 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H6X C29 N28 SING N N 1 H6X C29 C30 SING N N 2 H6X N28 C31 SING N N 3 H6X N28 C27 SING N N 4 H6X C27 C26 SING N N 5 H6X C30 N25 SING N N 6 H6X C26 N25 SING N N 7 H6X N25 C22 SING N N 8 H6X C23 C22 SING N N 9 H6X C23 C24 SING N N 10 H6X C22 C21 SING N N 11 H6X C24 N19 SING N N 12 H6X C21 C20 SING N N 13 H6X O39 C40 SING N N 14 H6X O39 C15 SING N N 15 H6X N19 C20 SING N N 16 H6X N19 C16 SING N N 17 H6X C15 C16 DOUB Y N 18 H6X C15 C14 SING Y N 19 H6X C16 C17 SING Y N 20 H6X C14 C13 DOUB Y N 21 H6X C17 C18 DOUB Y N 22 H6X N33 C37 DOUB Y N 23 H6X N33 C34 SING Y N 24 H6X C13 C18 SING Y N 25 H6X C13 N12 SING N N 26 H6X C37 C36 SING Y N 27 H6X C1 C2 SING N N 28 H6X C1 C38 SING N N 29 H6X C2 C3 DOUB Y N 30 H6X C2 C7 SING Y N 31 H6X C3 C4 SING Y N 32 H6X C7 C6 DOUB Y N 33 H6X C4 O8 SING N N 34 H6X C4 C5 DOUB Y N 35 H6X O8 C11 SING N N 36 H6X C34 N12 SING N N 37 H6X C34 N35 DOUB Y N 38 H6X C6 C5 SING Y N 39 H6X C6 O9 SING N N 40 H6X C36 C38 SING N N 41 H6X C36 C32 DOUB Y N 42 H6X O9 C10 SING N N 43 H6X N35 C32 SING Y N 44 H6X C1 H1 SING N N 45 H6X C1 H2 SING N N 46 H6X C3 H3 SING N N 47 H6X C5 H4 SING N N 48 H6X C7 H5 SING N N 49 H6X C10 H6 SING N N 50 H6X C10 H7 SING N N 51 H6X C10 H8 SING N N 52 H6X C11 H9 SING N N 53 H6X C11 H10 SING N N 54 H6X C11 H11 SING N N 55 H6X N12 H12 SING N N 56 H6X C14 H13 SING N N 57 H6X C17 H14 SING N N 58 H6X C18 H15 SING N N 59 H6X C20 H16 SING N N 60 H6X C20 H17 SING N N 61 H6X C21 H18 SING N N 62 H6X C21 H19 SING N N 63 H6X C22 H20 SING N N 64 H6X C23 H21 SING N N 65 H6X C23 H22 SING N N 66 H6X C24 H23 SING N N 67 H6X C24 H24 SING N N 68 H6X C26 H26 SING N N 69 H6X C26 H27 SING N N 70 H6X C27 H28 SING N N 71 H6X C27 H29 SING N N 72 H6X C29 H31 SING N N 73 H6X C29 H32 SING N N 74 H6X C30 H33 SING N N 75 H6X C30 H34 SING N N 76 H6X C31 H35 SING N N 77 H6X C31 H36 SING N N 78 H6X C31 H37 SING N N 79 H6X C32 H38 SING N N 80 H6X C37 H39 SING N N 81 H6X C38 H40 SING N N 82 H6X C38 H41 SING N N 83 H6X C40 H42 SING N N 84 H6X C40 H43 SING N N 85 H6X C40 H44 SING N N 86 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H6X InChI InChI 1.03 "InChI=1S/C31H42N6O3/c1-35-13-15-36(16-14-35)26-9-11-37(12-10-26)29-8-7-25(19-30(29)40-4)34-31-32-21-24(22-33-31)6-5-23-17-27(38-2)20-28(18-23)39-3/h7-8,17-22,26H,5-6,9-16H2,1-4H3,(H,32,33,34)" H6X InChIKey InChI 1.03 KTAFHTVOQVOCCA-UHFFFAOYSA-N H6X SMILES_CANONICAL CACTVS 3.385 "COc1cc(CCc2cnc(Nc3ccc(N4CCC(CC4)N5CCN(C)CC5)c(OC)c3)nc2)cc(OC)c1" H6X SMILES CACTVS 3.385 "COc1cc(CCc2cnc(Nc3ccc(N4CCC(CC4)N5CCN(C)CC5)c(OC)c3)nc2)cc(OC)c1" H6X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C2CCN(CC2)c3ccc(cc3OC)Nc4ncc(cn4)CCc5cc(cc(c5)OC)OC" H6X SMILES "OpenEye OEToolkits" 2.0.7 "CN1CCN(CC1)C2CCN(CC2)c3ccc(cc3OC)Nc4ncc(cn4)CCc5cc(cc(c5)OC)OC" # _pdbx_chem_comp_identifier.comp_id H6X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[2-(3,5-dimethoxyphenyl)ethyl]-~{N}-[3-methoxy-4-[4-(4-methylpiperazin-1-yl)piperidin-1-yl]phenyl]pyrimidin-2-amine" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H6X "Create component" 2020-11-20 PDBJ H6X "Initial release" 2021-02-03 RCSB ##