data_H73
#
_chem_comp.id H73
_chem_comp.name "5'-S-[(2R,4R)-1-{2-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridine-6-carbonyl)amino]ethyl}-2-carboxypiperidin-4-yl]-5'-thioadenosine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C27 H36 N12 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-10-09
_chem_comp.pdbx_modified_date 2020-11-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 672.716
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H73
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7KDO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H73 C01 C1 C 0 1 N N N 3.092 19.988 10.251 -1.037 -3.043 2.581 C01 H73 1
H73 C1 C2 C 0 1 N N S 1.932 16.937 15.345 4.206 -0.057 -1.218 C1 H73 2
H73 C10 C3 C 0 1 N N N 2.321 18.381 15.317 3.442 -1.378 -1.333 C10 H73 3
H73 C11 C4 C 0 1 N N R 4.641 18.121 13.206 1.637 -3.225 -0.153 C11 H73 4
H73 C12 C5 C 0 1 N N N 3.649 18.552 12.137 0.847 -3.652 1.087 C12 H73 5
H73 C13 C6 C 0 1 N N R 3.989 19.919 11.492 -0.243 -2.617 1.373 C13 H73 6
H73 C14 C7 C 0 1 N N N 6.190 19.886 12.271 -0.408 -2.059 -0.982 C14 H73 7
H73 C15 C8 C 0 1 N N N 6.050 18.534 12.850 0.677 -3.078 -1.336 C15 H73 8
H73 C16 C9 C 0 1 N N N 5.682 21.098 10.375 -2.276 -1.631 0.502 C16 H73 9
H73 C18 C10 C 0 1 N N N 5.426 24.669 10.061 -5.581 -0.970 -1.068 C18 H73 10
H73 C19 C11 C 0 1 N N N 8.430 27.330 5.199 -9.777 3.116 1.188 C19 H73 11
H73 C2 C12 C 0 1 N N S 2.758 16.144 16.410 4.956 0.246 -2.534 C2 H73 12
H73 C20 C13 C 0 1 N N N 8.720 25.462 6.762 -7.481 2.651 1.425 C20 H73 13
H73 C21 C14 C 0 1 N N N 5.843 25.480 8.866 -6.716 -0.091 -0.779 C21 H73 14
H73 C22 C15 C 0 1 N N N 5.063 26.715 8.478 -7.965 -0.197 -1.616 C22 H73 15
H73 C23 C16 C 0 1 N N N 4.871 27.714 9.616 -8.158 -1.646 -2.068 C23 H73 16
H73 C24 C17 C 0 1 N N N 3.734 26.382 7.966 -7.839 0.709 -2.842 C24 H73 17
H73 C25 C18 C 0 1 N N N 6.850 27.034 6.814 -8.944 1.303 0.032 C25 H73 18
H73 C26 C19 C 0 1 N N N 7.491 25.931 7.342 -7.652 1.557 0.539 C26 H73 19
H73 C27 C20 C 0 1 N N N 5.490 22.488 11.078 -3.363 -1.839 -0.554 C27 H73 20
H73 C3 C21 C 0 1 N N R 2.923 14.678 15.800 6.282 0.889 -2.071 C3 H73 21
H73 C4 C22 C 0 1 N N R 2.146 14.856 14.485 6.176 0.899 -0.530 C4 H73 22
H73 C5 C23 C 0 1 Y N N 1.740 13.405 12.455 7.940 -0.595 0.482 C5 H73 23
H73 C6 C24 C 0 1 Y N N 3.704 13.302 11.568 9.525 0.821 0.913 C6 H73 24
H73 C7 C25 C 0 1 Y N N 4.847 13.085 10.820 10.684 1.526 1.281 C7 H73 25
H73 C8 C26 C 0 1 Y N N 6.033 14.377 12.326 9.708 3.468 0.506 C8 H73 26
H73 C9 C27 C 0 1 Y N N 3.839 14.106 12.732 8.470 1.540 0.328 C9 H73 27
H73 N1 N1 N 0 1 Y N N 2.594 14.157 13.310 7.483 0.622 0.073 N1 H73 28
H73 N10 N2 N 0 1 N N N 9.152 26.244 5.642 -8.561 3.406 1.724 N10 H73 29
H73 N11 N3 N 0 1 N N N 7.031 25.202 8.428 -6.627 0.768 0.197 N11 H73 30
H73 N12 N4 N 0 1 N N N 5.682 27.475 7.386 -9.120 0.224 -0.806 N12 H73 31
H73 N2 N5 N 0 1 Y N N 2.380 12.874 11.416 9.139 -0.476 0.975 N2 H73 32
H73 N28 N6 N 0 1 N N N 6.125 23.558 10.380 -4.499 -0.959 -0.265 N28 H73 33
H73 N3 N7 N 0 1 N N N 4.853 12.322 9.667 11.757 0.871 1.860 N3 H73 34
H73 N4 N8 N 0 1 Y N N 6.043 13.627 11.195 10.727 2.835 1.059 N4 H73 35
H73 N5 N9 N 0 1 Y N N 5.003 14.665 13.152 8.604 2.850 0.145 N5 H73 36
H73 N6 N10 N 0 1 N N N 5.436 19.967 11.107 -1.137 -2.513 0.212 N6 H73 37
H73 N8 N11 N 0 1 N N N 7.285 27.774 5.734 -9.956 2.094 0.370 N8 H73 38
H73 N9 N12 N 0 1 N N N 8.952 27.997 4.120 -10.847 3.902 1.508 N9 H73 39
H73 O01 O1 O 0 1 N N N 3.601 19.494 9.202 -2.016 -3.739 2.446 O01 H73 40
H73 O03 O2 O 0 1 N N N 1.986 20.522 10.361 -0.653 -2.655 3.807 O03 H73 41
H73 O1 O3 O 0 1 N N N 2.170 16.245 14.173 5.242 -0.158 -0.218 O1 H73 42
H73 O2 O4 O 0 1 N N N 2.117 16.129 17.625 4.208 1.162 -3.337 O2 H73 43
H73 O3 O5 O 0 1 N N N 2.222 13.742 16.589 6.394 2.223 -2.573 O3 H73 44
H73 O4 O6 O 0 1 N N N 4.441 25.030 10.724 -5.616 -1.711 -2.033 O4 H73 45
H73 O5 O7 O 0 1 N N N 9.432 24.528 7.068 -6.390 2.904 1.904 O5 H73 46
H73 S1 S1 S 0 1 N N N 4.050 18.833 14.848 2.454 -1.637 0.167 S1 H73 47
H73 H1 H1 H 0 1 N N N 0.870 16.864 15.621 3.521 0.756 -0.976 H1 H73 48
H73 H10A H2 H 0 0 N N N 2.145 18.782 16.326 2.783 -1.343 -2.200 H10A H73 49
H73 H10 H3 H 0 1 N N N 1.652 18.882 14.602 4.151 -2.198 -1.447 H10 H73 50
H73 H11 H4 H 0 1 N N N 4.597 17.028 13.326 2.388 -3.981 -0.384 H11 H73 51
H73 H12 H5 H 0 1 N N N 2.652 18.622 12.596 0.388 -4.625 0.909 H12 H73 52
H73 H12A H6 H 0 0 N N N 3.636 17.788 11.346 1.519 -3.718 1.943 H12A H73 53
H73 H02 H7 H 0 1 N N N 3.743 20.736 12.187 0.217 -1.648 1.564 H02 H73 54
H73 H14A H8 H 0 0 N N N 7.248 20.078 12.038 0.053 -1.092 -0.779 H14A H73 55
H73 H14 H9 H 0 1 N N N 5.832 20.634 12.994 -1.102 -1.962 -1.817 H14 H73 56
H73 H15A H10 H 0 0 N N N 6.441 17.810 12.119 1.227 -2.734 -2.212 H15A H73 57
H73 H15 H11 H 0 1 N N N 6.657 18.494 13.767 0.215 -4.041 -1.551 H15 H73 58
H73 H16 H12 H 0 1 N N N 5.010 21.076 9.504 -1.945 -0.593 0.484 H16 H73 59
H73 H16A H13 H 0 0 N N N 6.726 21.046 10.034 -2.677 -1.867 1.488 H16A H73 60
H73 H2 H14 H 0 1 N N N 3.757 16.598 16.490 5.147 -0.674 -3.086 H2 H73 61
H73 H23B H15 H 0 0 N N N 4.407 27.207 10.475 -8.077 -2.309 -1.206 H23B H73 62
H73 H23A H16 H 0 0 N N N 5.848 28.122 9.915 -9.143 -1.758 -2.520 H23A H73 63
H73 H23 H17 H 0 1 N N N 4.220 28.534 9.278 -7.391 -1.904 -2.798 H23 H73 64
H73 H24A H18 H 0 0 N N N 3.183 25.804 8.723 -6.978 0.400 -3.435 H24A H73 65
H73 H24B H19 H 0 0 N N N 3.185 27.308 7.742 -8.743 0.631 -3.446 H24B H73 66
H73 H24 H20 H 0 1 N N N 3.834 25.784 7.048 -7.706 1.741 -2.519 H24 H73 67
H73 H27 H21 H 0 1 N N N 4.413 22.702 11.143 -2.963 -1.602 -1.540 H27 H73 68
H73 H27A H22 H 0 0 N N N 5.914 22.430 12.091 -3.694 -2.877 -0.535 H27A H73 69
H73 H3 H23 H 0 1 N N N 3.981 14.429 15.630 7.131 0.288 -2.394 H3 H73 70
H73 H4 H24 H 0 1 N N N 1.105 14.562 14.684 5.794 1.858 -0.181 H4 H73 71
H73 H5 H25 H 0 1 N N N 0.682 13.278 12.631 7.388 -1.520 0.413 H5 H73 72
H73 H8 H26 H 0 1 N N N 6.984 14.805 12.606 9.784 4.533 0.343 H8 H73 73
H73 HN10 H27 H 0 0 N N N 9.998 25.995 5.171 -8.469 4.161 2.326 HN10 H73 74
H73 HN12 H28 H 0 0 N N N 5.863 28.392 7.740 -9.970 -0.240 -0.860 HN12 H73 75
H73 HN28 H29 H 0 0 N N N 7.090 23.485 10.126 -4.471 -0.369 0.504 HN28 H73 76
H73 HN3A H30 H 0 0 N N N 5.778 12.297 9.288 12.552 1.368 2.109 HN3A H73 77
H73 HN3 H31 H 0 1 N N N 4.556 11.392 9.882 11.714 -0.086 2.017 HN3 H73 78
H73 HN9 H33 H 0 1 N N N 8.479 28.796 3.750 -10.733 4.654 2.110 HN9 H73 79
H73 HN9A H34 H 0 0 N N N 9.806 27.684 3.704 -11.721 3.709 1.134 HN9A H73 80
H73 H7 H35 H 0 1 N N N 1.545 20.515 9.519 -1.193 -2.954 4.551 H7 H73 81
H73 HO2 H36 H 0 1 N N N 2.638 15.642 18.253 4.634 1.388 -4.176 HO2 H73 82
H73 HO3 H37 H 0 1 N N N 2.681 13.612 17.410 6.404 2.280 -3.538 HO3 H73 83
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H73 N9 C19 SING N N 1
H73 C19 N10 SING N N 2
H73 C19 N8 DOUB N N 3
H73 N10 C20 SING N N 4
H73 N8 C25 SING N N 5
H73 C20 O5 DOUB N N 6
H73 C20 C26 SING N N 7
H73 C25 C26 DOUB N N 8
H73 C25 N12 SING N N 9
H73 C26 N11 SING N N 10
H73 N12 C22 SING N N 11
H73 C24 C22 SING N N 12
H73 N11 C21 DOUB N N 13
H73 C22 C21 SING N N 14
H73 C22 C23 SING N N 15
H73 C21 C18 SING N N 16
H73 O01 C01 DOUB N N 17
H73 N3 C7 SING N N 18
H73 C18 N28 SING N N 19
H73 C18 O4 DOUB N N 20
H73 C01 O03 SING N N 21
H73 C01 C13 SING N N 22
H73 C16 C27 SING N N 23
H73 C16 N6 SING N N 24
H73 N28 C27 SING N N 25
H73 C7 N4 DOUB Y N 26
H73 C7 C6 SING Y N 27
H73 N6 C13 SING N N 28
H73 N6 C14 SING N N 29
H73 N4 C8 SING Y N 30
H73 N2 C6 SING Y N 31
H73 N2 C5 DOUB Y N 32
H73 C13 C12 SING N N 33
H73 C6 C9 DOUB Y N 34
H73 C12 C11 SING N N 35
H73 C14 C15 SING N N 36
H73 C8 N5 DOUB Y N 37
H73 C5 N1 SING Y N 38
H73 C9 N5 SING Y N 39
H73 C9 N1 SING Y N 40
H73 C15 C11 SING N N 41
H73 C11 S1 SING N N 42
H73 N1 C4 SING N N 43
H73 O1 C4 SING N N 44
H73 O1 C1 SING N N 45
H73 C4 C3 SING N N 46
H73 S1 C10 SING N N 47
H73 C10 C1 SING N N 48
H73 C1 C2 SING N N 49
H73 C3 C2 SING N N 50
H73 C3 O3 SING N N 51
H73 C2 O2 SING N N 52
H73 C1 H1 SING N N 53
H73 C10 H10A SING N N 54
H73 C10 H10 SING N N 55
H73 C11 H11 SING N N 56
H73 C12 H12 SING N N 57
H73 C12 H12A SING N N 58
H73 C13 H02 SING N N 59
H73 C14 H14A SING N N 60
H73 C14 H14 SING N N 61
H73 C15 H15A SING N N 62
H73 C15 H15 SING N N 63
H73 C16 H16 SING N N 64
H73 C16 H16A SING N N 65
H73 C2 H2 SING N N 66
H73 C23 H23B SING N N 67
H73 C23 H23A SING N N 68
H73 C23 H23 SING N N 69
H73 C24 H24A SING N N 70
H73 C24 H24B SING N N 71
H73 C24 H24 SING N N 72
H73 C27 H27 SING N N 73
H73 C27 H27A SING N N 74
H73 C3 H3 SING N N 75
H73 C4 H4 SING N N 76
H73 C5 H5 SING N N 77
H73 C8 H8 SING N N 78
H73 N10 HN10 SING N N 79
H73 N12 HN12 SING N N 80
H73 N28 HN28 SING N N 81
H73 N3 HN3A SING N N 82
H73 N3 HN3 SING N N 83
H73 N9 HN9 SING N N 84
H73 N9 HN9A SING N N 85
H73 O03 H7 SING N N 86
H73 O2 HO2 SING N N 87
H73 O3 HO3 SING N N 88
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H73 SMILES ACDLabs 12.01 "C(O)(C4CC(SCC3C(O)C(O)C(n2cnc1c2ncnc1N)O3)CCN4CCNC(=O)C=6C(C)(C)NC5=C(C(=O)NC(=N5)N)N=6)=O"
H73 InChI InChI 1.03 "InChI=1S/C27H36N12O7S/c1-27(2)18(34-15-20(37-27)35-26(29)36-22(15)42)23(43)30-4-6-38-5-3-11(7-12(38)25(44)45)47-8-13-16(40)17(41)24(46-13)39-10-33-14-19(28)31-9-32-21(14)39/h9-13,16-17,24,40-41H,3-8H2,1-2H3,(H,30,43)(H,44,45)(H2,28,31,32)(H4,29,35,36,37,42)/t11-,12-,13-,16-,17-,24-/m1/s1"
H73 InChIKey InChI 1.03 DFLAELLQWVMGCU-NERDUYAPSA-N
H73 SMILES_CANONICAL CACTVS 3.385 "CC1(C)NC2=C(N=C1C(=O)NCCN3CC[C@H](C[C@@H]3C(O)=O)SC[C@H]4O[C@H]([C@H](O)[C@@H]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N"
H73 SMILES CACTVS 3.385 "CC1(C)NC2=C(N=C1C(=O)NCCN3CC[CH](C[CH]3C(O)=O)SC[CH]4O[CH]([CH](O)[CH]4O)n5cnc6c(N)ncnc56)C(=O)NC(=N2)N"
H73 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCCN3CC[C@H](C[C@@H]3C(=O)O)SC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)C"
H73 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(=NC2=C(N1)N=C(NC2=O)N)C(=O)NCCN3CCC(CC3C(=O)O)SCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)C"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
H73 "SYSTEMATIC NAME" ACDLabs 12.01 "5'-S-[(2R,4R)-1-{2-[(2-amino-7,7-dimethyl-4-oxo-3,4,7,8-tetrahydropteridine-6-carbonyl)amino]ethyl}-2-carboxypiperidin-4-yl]-5'-thioadenosine"
H73 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{R},4~{R})-4-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]-1-[2-[(2-azanyl-7,7-dimethyl-4-oxidanylidene-3,8-dihydropteridin-6-yl)carbonylamino]ethyl]piperidine-2-carboxylic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H73 "Create component" 2020-10-09 RCSB
H73 "Initial release" 2020-12-02 RCSB
##