data_H8T
#
_chem_comp.id H8T
_chem_comp.name "Virginiamycin M"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C28 H33 N3 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-11-26
_chem_comp.pdbx_modified_date 2022-12-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 523.578
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code H8T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6I9R
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
H8T C1 C1 C 0 1 Y N N 257.859 306.591 277.966 -3.829 1.276 -0.175 C1 H8T 1
H8T C10 C2 C 0 1 Y N N 253.791 308.376 281.678 1.133 4.299 -0.162 C10 H8T 2
H8T C12 C3 C 0 1 Y N N 254.362 306.150 281.439 -0.974 4.772 -0.418 C12 H8T 3
H8T C13 C4 C 0 1 N N N 253.188 309.707 282.337 2.641 4.393 -0.207 C13 H8T 4
H8T C14 C5 C 0 1 N N N 254.363 310.538 282.952 3.239 3.056 0.154 C14 H8T 5
H8T C16 C6 C 0 1 N N N 254.197 312.105 282.805 3.882 2.192 -0.896 C16 H8T 6
H8T C17 C7 C 0 1 N N S 255.555 312.725 282.483 4.755 1.123 -0.227 C17 H8T 7
H8T C19 C8 C 0 1 N N N 255.888 312.466 280.966 4.383 -0.233 -0.771 C19 H8T 8
H8T C2 C9 C 0 1 Y N N 259.106 307.203 278.250 -5.043 1.543 -0.763 C2 H8T 9
H8T C20 C10 C 0 1 N N N 257.353 312.302 280.466 4.197 -1.258 0.053 C20 H8T 10
H8T C21 C11 C 0 1 N N N 258.506 312.387 281.417 4.376 -1.087 1.540 C21 H8T 11
H8T C22 C12 C 0 1 N N N 257.588 312.053 278.960 3.790 -2.569 -0.485 C22 H8T 12
H8T C23 C13 C 0 1 N N N 258.881 312.556 278.258 3.454 -3.539 0.356 C23 H8T 13
H8T C24 C14 C 0 1 N N N 259.059 312.297 276.766 2.879 -4.835 -0.163 C24 H8T 14
H8T C26 C15 C 0 1 N N N 258.876 310.381 275.177 0.534 -4.421 -0.564 C26 H8T 15
H8T C28 C16 C 0 1 N N N 259.148 308.833 275.006 -0.844 -4.195 -0.111 C28 H8T 16
H8T C29 C17 C 0 1 N N N 258.621 308.035 273.702 -1.796 -3.823 -0.966 C29 H8T 17
H8T C3 C18 C 0 1 Y N N 259.017 308.148 279.371 -5.085 2.917 -1.024 C3 H8T 18
H8T C30 C19 C 0 1 N N R 258.873 306.524 273.538 -3.187 -3.521 -0.477 C30 H8T 19
H8T C31 C20 C 0 1 N N N 260.221 306.167 274.193 -3.765 -4.762 0.206 C31 H8T 20
H8T C32 C21 C 0 1 N N R 257.664 305.783 274.129 -3.159 -2.365 0.516 C32 H8T 21
H8T C33 C22 C 0 1 N N N 257.356 304.468 273.356 -1.706 -1.994 0.816 C33 H8T 22
H8T C34 C23 C 0 1 N N N 258.534 303.509 273.341 -1.121 -1.224 -0.369 C34 H8T 23
H8T C35 C24 C 0 1 N N N 256.174 303.757 274.044 -1.652 -1.118 2.070 C35 H8T 24
H8T C37 C25 C 0 1 N N N 257.344 306.559 276.449 -3.302 -0.012 0.259 C37 H8T 25
H8T C4 C26 C 0 1 Y N N 257.540 307.947 279.948 -3.917 3.460 -0.605 C4 H8T 26
H8T C6 C27 C 0 1 N N N 255.514 306.346 279.136 -1.923 2.580 0.457 C6 H8T 27
H8T C8 C28 C 0 1 Y N N 254.755 306.918 280.371 -0.863 3.524 0.112 C8 H8T 28
H8T N25 N1 N 0 1 N N N 259.293 310.872 276.552 1.469 -4.912 0.288 N25 H8T 29
H8T N5 N2 N 0 1 Y N N 256.885 306.904 279.005 -3.138 2.470 -0.080 N5 H8T 30
H8T N9 N3 N 0 1 Y N N 254.409 308.318 280.510 0.470 3.280 0.286 N9 H8T 31
H8T O11 O1 O 0 1 Y N N 253.746 307.037 282.285 0.278 5.238 -0.591 O11 H8T 32
H8T O15 O2 O 0 1 N N N 255.299 310.030 283.482 3.201 2.675 1.299 O15 H8T 33
H8T O18 O3 O 0 1 N N N 255.517 314.088 282.727 6.131 1.388 -0.506 O18 H8T 34
H8T O27 O4 O 0 1 N N N 258.384 311.073 274.327 0.840 -4.166 -1.713 O27 H8T 35
H8T O36 O5 O 0 1 N N N 257.831 305.485 275.504 -3.848 -1.204 -0.025 O36 H8T 36
H8T O38 O6 O 0 1 N N N 256.568 307.406 276.110 -2.289 -0.006 0.932 O38 H8T 37
H8T O7 O7 O 0 1 N N N 255.057 305.553 278.392 -1.663 1.793 1.346 O7 H8T 38
H8T H1 H1 H 0 1 N N N 254.505 305.089 281.581 -1.891 5.290 -0.655 H1 H8T 39
H8T H2 H2 H 0 1 N N N 252.677 310.303 281.567 2.957 4.674 -1.212 H2 H8T 40
H8T H3 H3 H 0 1 N N N 252.472 309.437 283.127 2.979 5.147 0.503 H3 H8T 41
H8T H4 H4 H 0 1 N N N 253.815 312.525 283.747 3.108 1.707 -1.490 H4 H8T 42
H8T H5 H5 H 0 1 N N N 253.490 312.326 281.992 4.503 2.811 -1.544 H5 H8T 43
H8T H6 H6 H 0 1 N N N 256.326 312.236 283.096 4.591 1.141 0.850 H6 H8T 44
H8T H7 H7 H 0 1 N N N 255.079 312.400 280.254 4.262 -0.369 -1.839 H7 H8T 45
H8T H8 H8 H 0 1 N N N 260.016 306.998 277.705 -5.819 0.825 -0.983 H8 H8T 46
H8T H9 H9 H 0 1 N N N 258.130 312.567 282.435 3.427 -0.794 1.988 H9 H8T 47
H8T H10 H10 H 0 1 N N N 259.069 311.442 281.396 4.708 -2.029 1.977 H10 H8T 48
H8T H11 H11 H 0 1 N N N 259.167 313.214 281.119 5.121 -0.315 1.729 H11 H8T 49
H8T H12 H12 H 0 1 N N N 256.843 311.522 278.386 3.766 -2.729 -1.553 H12 H8T 50
H8T H13 H13 H 0 1 N N N 259.641 313.080 278.818 3.541 -3.380 1.423 H13 H8T 51
H8T H14 H14 H 0 1 N N N 259.920 312.872 276.393 2.921 -4.849 -1.252 H14 H8T 52
H8T H15 H15 H 0 1 N N N 258.151 312.606 276.228 3.443 -5.677 0.239 H15 H8T 53
H8T H16 H16 H 0 1 N N N 259.694 308.301 275.771 -1.097 -4.339 0.931 H16 H8T 54
H8T H17 H17 H 0 1 N N N 258.083 308.570 272.933 -1.569 -3.721 -2.019 H17 H8T 55
H8T H18 H18 H 0 1 N N N 259.779 308.826 279.726 -5.906 3.451 -1.480 H18 H8T 56
H8T H19 H19 H 0 1 N N N 258.934 306.294 272.464 -3.818 -3.253 -1.325 H19 H8T 57
H8T H20 H20 H 0 1 N N N 260.410 305.089 274.081 -3.134 -5.038 1.051 H20 H8T 58
H8T H21 H21 H 0 1 N N N 261.027 306.733 273.704 -4.772 -4.546 0.561 H21 H8T 59
H8T H22 H22 H 0 1 N N N 260.189 306.424 275.262 -3.800 -5.586 -0.506 H22 H8T 60
H8T H23 H23 H 0 1 N N N 256.789 306.439 274.012 -3.648 -2.674 1.440 H23 H8T 61
H8T H24 H24 H 0 1 N N N 257.074 304.718 272.323 -1.126 -2.902 0.982 H24 H8T 62
H8T H25 H25 H 0 1 N N N 259.394 303.992 272.854 -0.390 -0.501 -0.008 H25 H8T 63
H8T H26 H26 H 0 1 N N N 258.801 303.240 274.374 -0.635 -1.922 -1.052 H26 H8T 64
H8T H27 H27 H 0 1 N N N 258.260 302.601 272.784 -1.921 -0.701 -0.893 H27 H8T 65
H8T H28 H28 H 0 1 N N N 255.305 304.430 274.069 -2.586 -0.565 2.167 H28 H8T 66
H8T H29 H29 H 0 1 N N N 255.917 302.847 273.483 -1.510 -1.749 2.948 H29 H8T 67
H8T H30 H30 H 0 1 N N N 256.457 303.486 275.072 -0.821 -0.418 1.988 H30 H8T 68
H8T H31 H31 H 0 1 N N N 257.096 308.431 280.805 -3.647 4.503 -0.675 H31 H8T 69
H8T H32 H32 H 0 1 N N N 259.691 310.274 277.247 1.227 -5.293 1.147 H32 H8T 70
H8T H33 H33 H 0 1 N N N 255.316 314.241 283.643 6.742 0.749 -0.112 H33 H8T 71
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
H8T C34 C33 SING N N 1
H8T C33 C35 SING N N 2
H8T C33 C32 SING N N 3
H8T C30 C29 SING N N 4
H8T C30 C32 SING N N 5
H8T C30 C31 SING N N 6
H8T C29 C28 DOUB N E 7
H8T C32 O36 SING N N 8
H8T O27 C26 DOUB N N 9
H8T C28 C26 SING N N 10
H8T C26 N25 SING N N 11
H8T O36 C37 SING N N 12
H8T O38 C37 DOUB N N 13
H8T C37 C1 SING N N 14
H8T N25 C24 SING N N 15
H8T C24 C23 SING N N 16
H8T C1 C2 DOUB Y N 17
H8T C1 N5 SING Y N 18
H8T C2 C3 SING Y N 19
H8T C23 C22 DOUB N E 20
H8T O7 C6 DOUB N N 21
H8T C22 C20 SING N N 22
H8T N5 C6 SING N N 23
H8T N5 C4 SING Y N 24
H8T C6 C8 SING N N 25
H8T C3 C4 DOUB Y N 26
H8T C8 N9 SING Y N 27
H8T C8 C12 DOUB Y N 28
H8T C20 C19 DOUB N E 29
H8T C20 C21 SING N N 30
H8T N9 C10 DOUB Y N 31
H8T C19 C17 SING N N 32
H8T C12 O11 SING Y N 33
H8T C10 O11 SING Y N 34
H8T C10 C13 SING N N 35
H8T C13 C14 SING N N 36
H8T C17 O18 SING N N 37
H8T C17 C16 SING N N 38
H8T C16 C14 SING N N 39
H8T C14 O15 DOUB N N 40
H8T C12 H1 SING N N 41
H8T C13 H2 SING N N 42
H8T C13 H3 SING N N 43
H8T C16 H4 SING N N 44
H8T C16 H5 SING N N 45
H8T C17 H6 SING N N 46
H8T C19 H7 SING N N 47
H8T C2 H8 SING N N 48
H8T C21 H9 SING N N 49
H8T C21 H10 SING N N 50
H8T C21 H11 SING N N 51
H8T C22 H12 SING N N 52
H8T C23 H13 SING N N 53
H8T C24 H14 SING N N 54
H8T C24 H15 SING N N 55
H8T C28 H16 SING N N 56
H8T C29 H17 SING N N 57
H8T C3 H18 SING N N 58
H8T C30 H19 SING N N 59
H8T C31 H20 SING N N 60
H8T C31 H21 SING N N 61
H8T C31 H22 SING N N 62
H8T C32 H23 SING N N 63
H8T C33 H24 SING N N 64
H8T C34 H25 SING N N 65
H8T C34 H26 SING N N 66
H8T C34 H27 SING N N 67
H8T C35 H28 SING N N 68
H8T C35 H29 SING N N 69
H8T C35 H30 SING N N 70
H8T C4 H31 SING N N 71
H8T N25 H32 SING N N 72
H8T O18 H33 SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
H8T InChI InChI 1.06 "InChI=1S/C28H33N3O7/c1-17(2)26-19(4)9-10-24(34)29-11-5-7-18(3)13-20(32)14-21(33)15-25-30-22(16-37-25)27(35)31-12-6-8-23(31)28(36)38-26/h5-10,12-13,16-17,19-20,26,32H,11,14-15H2,1-4H3,(H,29,34)/b7-5+,10-9+,18-13+/t19-,20-,26-/m1/s1"
H8T InChIKey InChI 1.06 CNTGCXRBDCXZRN-FQTGFAPKSA-N
H8T SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H]1OC(=O)c2cccn2C(=O)c3coc(CC(=O)C[C@H](O)/C=C(C)/C=C/CNC(=O)/C=C/[C@H]1C)n3"
H8T SMILES CACTVS 3.385 "CC(C)[CH]1OC(=O)c2cccn2C(=O)c3coc(CC(=O)C[CH](O)C=C(C)C=CCNC(=O)C=C[CH]1C)n3"
H8T SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H]1/C=C/C(=O)NC/C=C/C(=C/[C@H](CC(=O)Cc2nc(co2)C(=O)n3cccc3C(=O)O[C@@H]1C(C)C)O)/C"
H8T SMILES "OpenEye OEToolkits" 2.0.7 "CC1C=CC(=O)NCC=CC(=CC(CC(=O)Cc2nc(co2)C(=O)n3cccc3C(=O)OC1C(C)C)O)C"
#
_pdbx_chem_comp_identifier.comp_id H8T
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(10~{R},11~{R},12~{E},17~{E},19~{E},21~{S})-11,19-dimethyl-21-oxidanyl-10-propan-2-yl-9,26-dioxa-3,15,28-triazatricyclo[23.2.1.0^{3,7}]octacosa-1(27),4,6,12,17,19,25(28)-heptaene-2,8,14,23-tetrone"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
H8T "Create component" 2018-11-26 EBI
H8T "Initial release" 2020-07-08 RCSB
H8T "Modify name" 2022-12-19 PDBE
#