data_H9F # _chem_comp.id H9F _chem_comp.name "2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H40 N8 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-04 _chem_comp.pdbx_modified_date 2021-12-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 504.626 _chem_comp.one_letter_code ? _chem_comp.three_letter_code H9F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DMC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal H9F N1 N1 N 0 1 Y N N -1.510 -34.746 -24.534 -1.920 1.504 0.171 N1 H9F 1 H9F N3 N2 N 0 1 Y N N -6.382 -34.523 -24.098 1.920 -1.504 0.171 N3 H9F 2 H9F C4 C1 C 0 1 Y N N -4.096 -33.936 -24.268 -0.273 -0.651 0.171 C4 H9F 3 H9F C5 C2 C 0 1 Y N N -5.448 -33.576 -24.120 0.619 -1.752 0.171 C5 H9F 4 H9F C6 C3 C 0 1 Y N N -6.051 -35.803 -24.293 2.390 -0.260 0.171 C6 H9F 5 H9F C7 C4 C 0 1 N N N -0.954 -31.347 -23.438 -4.310 -1.291 0.171 C7 H9F 6 H9F C8 C5 C 0 1 N N N -1.536 -31.418 -22.044 -4.501 -1.765 1.614 C8 H9F 7 H9F C10 C6 C 0 1 N N N 1.419 -33.531 -24.674 -4.978 1.624 -1.270 C10 H9F 8 H9F C13 C7 C 0 1 N N N -6.811 -38.135 -24.433 4.310 1.291 0.173 C13 H9F 9 H9F C15 C8 C 0 1 N N N -0.694 -37.378 -25.059 -1.251 4.014 0.171 C15 H9F 10 H9F C17 C9 C 0 1 N N N -1.102 -37.678 -27.572 0.262 5.721 -0.844 C17 H9F 11 H9F C20 C10 C 0 1 N N N -5.086 -31.076 -24.047 -0.760 -3.277 -0.963 C20 H9F 12 H9F C21 C11 C 0 1 N N N -5.169 -30.363 -25.387 -1.378 -4.673 -0.851 C21 H9F 13 H9F C22 C12 C 0 1 N N N -6.308 -30.860 -26.257 -0.262 -5.721 -0.844 C22 H9F 14 H9F C24 C13 C 0 1 N N N -7.322 -31.996 -24.237 1.251 -4.014 0.171 C24 H9F 15 H9F C1 C14 C 0 1 Y N N -3.800 -35.305 -24.450 0.273 0.651 0.170 C1 H9F 16 H9F C2 C15 C 0 1 Y N N -2.450 -35.682 -24.555 -0.619 1.752 0.171 C2 H9F 17 H9F C3 C16 C 0 1 Y N N -1.851 -33.480 -24.293 -2.390 0.260 0.171 C3 H9F 18 H9F N2 N3 N 0 1 Y N N -3.093 -33.020 -24.209 -1.602 -0.799 0.171 N2 H9F 19 H9F N4 N4 N 0 1 Y N N -4.796 -36.245 -24.439 1.602 0.799 0.171 N4 H9F 20 H9F N5 N5 N 0 1 N N N -0.854 -32.600 -24.209 -3.761 0.067 0.172 N5 H9F 21 H9F O1 O1 O 0 1 N N N -0.667 -32.060 -21.139 -5.491 -0.957 2.253 O1 H9F 22 H9F C9 C17 C 0 1 N N N 0.286 -32.716 -25.114 -4.663 1.222 0.172 C9 H9F 23 H9F O2 O2 O 0 1 N N N 2.339 -33.521 -25.762 -5.708 0.575 -1.909 O2 H9F 24 H9F N6 N6 N 0 1 N N N -7.039 -36.708 -24.191 3.761 -0.067 0.172 N6 H9F 25 H9F C11 C18 C 0 1 N N N -8.333 -36.346 -23.586 4.663 -1.222 0.171 C11 H9F 26 H9F C12 C19 C 0 1 N N N -8.336 -36.141 -22.072 4.977 -1.623 -1.271 C12 H9F 27 H9F O3 O3 O 0 1 N N N -7.502 -35.072 -21.655 5.707 -0.573 -1.909 O3 H9F 28 H9F C14 C20 C 0 1 N N N -6.748 -38.924 -23.160 4.501 1.763 1.616 C14 H9F 29 H9F O4 O4 O 0 1 N N N -5.601 -39.750 -23.132 5.491 0.955 2.254 O4 H9F 30 H9F N7 N7 N 0 1 N N N -2.079 -36.925 -24.941 -0.145 3.048 0.171 N7 H9F 31 H9F N8 N8 N 0 1 N N N -5.891 -32.301 -24.054 0.144 -3.048 0.171 N8 H9F 32 H9F C16 C21 C 0 1 N N N -0.183 -37.137 -26.478 -0.693 5.431 0.318 C16 H9F 33 H9F C18 C22 C 0 1 N N N -2.563 -37.381 -27.271 1.378 4.673 -0.850 C18 H9F 34 H9F C19 C23 C 0 1 N N N -2.908 -37.740 -25.843 0.760 3.277 -0.963 C19 H9F 35 H9F C23 C24 C 0 1 N N N -7.567 -31.105 -25.446 0.693 -5.431 0.318 C23 H9F 36 H9F H1 H1 H 0 1 N N N 0.062 -30.936 -23.348 -3.622 -1.961 -0.343 H1 H9F 37 H9F H2 H2 H 0 1 N N N -1.580 -30.654 -24.019 -5.272 -1.294 -0.342 H2 H9F 38 H9F H3 H3 H 0 1 N N N -1.728 -30.395 -21.687 -4.825 -2.805 1.615 H3 H9F 39 H9F H4 H4 H 0 1 N N N -2.483 -31.976 -22.083 -3.557 -1.677 2.153 H4 H9F 40 H9F H5 H5 H 0 1 N N N 1.092 -34.558 -24.456 -5.576 2.535 -1.270 H5 H9F 41 H9F H6 H6 H 0 1 N N N 1.881 -33.095 -23.776 -4.047 1.800 -1.809 H6 H9F 42 H9F H7 H7 H 0 1 N N N -7.633 -38.525 -25.051 5.272 1.295 -0.341 H7 H9F 43 H9F H8 H8 H 0 1 N N N -5.859 -38.255 -24.971 3.621 1.962 -0.341 H8 H9F 44 H9F H9 H9 H 0 1 N N N -0.642 -38.453 -24.831 -1.802 3.935 -0.766 H9 H9F 45 H9F H10 H10 H 0 1 N N N -0.067 -36.821 -24.347 -1.920 3.799 1.005 H10 H9F 46 H9F H11 H11 H 0 1 N N N -0.967 -38.767 -27.646 -0.286 5.676 -1.785 H11 H9F 47 H9F H12 H12 H 0 1 N N N -0.832 -37.209 -28.530 0.695 6.714 -0.720 H12 H9F 48 H9F H13 H13 H 0 1 N N N -4.037 -31.336 -23.842 -0.200 -3.202 -1.895 H13 H9F 49 H9F H14 H14 H 0 1 N N N -5.458 -30.405 -23.259 -1.551 -2.528 -0.954 H14 H9F 50 H9F H15 H15 H 0 1 N N N -4.223 -30.520 -25.926 -1.950 -4.744 0.075 H15 H9F 51 H9F H16 H16 H 0 1 N N N -5.313 -29.288 -25.203 -2.038 -4.848 -1.700 H16 H9F 52 H9F H17 H17 H 0 1 N N N -6.005 -31.802 -26.738 -0.695 -6.713 -0.720 H17 H9F 53 H9F H18 H18 H 0 1 N N N -6.522 -30.106 -27.029 0.286 -5.676 -1.785 H18 H9F 54 H9F H19 H19 H 0 1 N N N -7.693 -31.483 -23.337 1.801 -3.935 -0.767 H19 H9F 55 H9F H20 H20 H 0 1 N N N -7.871 -32.939 -24.374 1.920 -3.799 1.004 H20 H9F 56 H9F H21 H21 H 0 1 N N N -1.067 -32.084 -20.278 -5.664 -1.201 3.173 H21 H9F 57 H9F H22 H22 H 0 1 N N N 0.664 -31.700 -25.300 -4.185 2.056 0.686 H22 H9F 58 H9F H23 H23 H 0 1 N N N -0.084 -33.147 -26.056 -5.588 0.960 0.687 H23 H9F 59 H9F H24 H24 H 0 1 N N N 3.103 -34.038 -25.536 -5.942 0.762 -2.828 H24 H9F 60 H9F H25 H25 H 0 1 N N N -8.671 -35.409 -24.052 5.588 -0.960 0.686 H25 H9F 61 H9F H26 H26 H 0 1 N N N -9.048 -37.149 -23.817 4.186 -2.056 0.685 H26 H9F 62 H9F H27 H27 H 0 1 N N N -9.366 -35.928 -21.749 5.576 -2.534 -1.273 H27 H9F 63 H9F H28 H28 H 0 1 N N N -7.985 -37.067 -21.592 4.047 -1.798 -1.811 H28 H9F 64 H9F H29 H29 H 0 1 N N N -7.541 -34.989 -20.709 5.941 -0.759 -2.829 H29 H9F 65 H9F H30 H30 H 0 1 N N N -6.712 -38.229 -22.308 4.825 2.804 1.617 H30 H9F 66 H9F H31 H31 H 0 1 N N N -7.647 -39.554 -23.082 3.558 1.675 2.154 H31 H9F 67 H9F H32 H32 H 0 1 N N N -5.582 -40.239 -22.318 5.664 1.198 3.174 H32 H9F 68 H9F H33 H33 H 0 1 N N N 0.798 -37.624 -26.579 -1.513 6.148 0.302 H33 H9F 69 H9F H34 H34 H 0 1 N N N -0.071 -36.053 -26.626 -0.154 5.514 1.261 H34 H9F 70 H9F H35 H35 H 0 1 N N N -2.751 -36.309 -27.427 2.037 4.848 -1.701 H35 H9F 71 H9F H36 H36 H 0 1 N N N -3.197 -37.968 -27.952 1.950 4.744 0.075 H36 H9F 72 H9F H37 H37 H 0 1 N N N -3.972 -37.534 -25.656 1.551 2.528 -0.954 H37 H9F 73 H9F H38 H38 H 0 1 N N N -2.705 -38.807 -25.670 0.200 3.202 -1.895 H38 H9F 74 H9F H39 H39 H 0 1 N N N -7.955 -30.137 -25.097 0.154 -5.514 1.261 H39 H9F 75 H9F H40 H40 H 0 1 N N N -8.314 -31.587 -26.093 1.514 -6.148 0.302 H40 H9F 76 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal H9F C17 C18 SING N N 1 H9F C17 C16 SING N N 2 H9F C18 C19 SING N N 3 H9F C16 C15 SING N N 4 H9F C22 C23 SING N N 5 H9F C22 C21 SING N N 6 H9F C19 N7 SING N N 7 H9F O2 C10 SING N N 8 H9F C23 C24 SING N N 9 H9F C21 C20 SING N N 10 H9F C9 C10 SING N N 11 H9F C9 N5 SING N N 12 H9F C15 N7 SING N N 13 H9F N7 C2 SING N N 14 H9F C2 N1 DOUB Y N 15 H9F C2 C1 SING Y N 16 H9F N1 C3 SING Y N 17 H9F C1 N4 SING Y N 18 H9F C1 C4 DOUB Y N 19 H9F N4 C6 DOUB Y N 20 H9F C13 N6 SING N N 21 H9F C13 C14 SING N N 22 H9F C6 N6 SING N N 23 H9F C6 N3 SING Y N 24 H9F C3 N2 DOUB Y N 25 H9F C3 N5 SING N N 26 H9F C4 N2 SING Y N 27 H9F C4 C5 SING Y N 28 H9F C24 N8 SING N N 29 H9F N5 C7 SING N N 30 H9F N6 C11 SING N N 31 H9F C5 N3 DOUB Y N 32 H9F C5 N8 SING N N 33 H9F N8 C20 SING N N 34 H9F C11 C12 SING N N 35 H9F C7 C8 SING N N 36 H9F C14 O4 SING N N 37 H9F C12 O3 SING N N 38 H9F C8 O1 SING N N 39 H9F C7 H1 SING N N 40 H9F C7 H2 SING N N 41 H9F C8 H3 SING N N 42 H9F C8 H4 SING N N 43 H9F C10 H5 SING N N 44 H9F C10 H6 SING N N 45 H9F C13 H7 SING N N 46 H9F C13 H8 SING N N 47 H9F C15 H9 SING N N 48 H9F C15 H10 SING N N 49 H9F C17 H11 SING N N 50 H9F C17 H12 SING N N 51 H9F C20 H13 SING N N 52 H9F C20 H14 SING N N 53 H9F C21 H15 SING N N 54 H9F C21 H16 SING N N 55 H9F C22 H17 SING N N 56 H9F C22 H18 SING N N 57 H9F C24 H19 SING N N 58 H9F C24 H20 SING N N 59 H9F O1 H21 SING N N 60 H9F C9 H22 SING N N 61 H9F C9 H23 SING N N 62 H9F O2 H24 SING N N 63 H9F C11 H25 SING N N 64 H9F C11 H26 SING N N 65 H9F C12 H27 SING N N 66 H9F C12 H28 SING N N 67 H9F O3 H29 SING N N 68 H9F C14 H30 SING N N 69 H9F C14 H31 SING N N 70 H9F O4 H32 SING N N 71 H9F C16 H33 SING N N 72 H9F C16 H34 SING N N 73 H9F C18 H35 SING N N 74 H9F C18 H36 SING N N 75 H9F C19 H37 SING N N 76 H9F C19 H38 SING N N 77 H9F C23 H39 SING N N 78 H9F C23 H40 SING N N 79 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor H9F InChI InChI 1.03 "InChI=1S/C24H40N8O4/c33-15-11-31(12-16-34)23-26-20-19(21(27-23)29-7-3-1-4-8-29)25-24(32(13-17-35)14-18-36)28-22(20)30-9-5-2-6-10-30/h33-36H,1-18H2" H9F InChIKey InChI 1.03 IZEKFCXSFNUWAM-UHFFFAOYSA-N H9F SMILES_CANONICAL CACTVS 3.385 "OCCN(CCO)c1nc(N2CCCCC2)c3nc(nc(N4CCCCC4)c3n1)N(CCO)CCO" H9F SMILES CACTVS 3.385 "OCCN(CCO)c1nc(N2CCCCC2)c3nc(nc(N4CCCCC4)c3n1)N(CCO)CCO" H9F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CCN(CC1)c2c3c(c(nc(n3)N(CCO)CCO)N4CCCCC4)nc(n2)N(CCO)CCO" H9F SMILES "OpenEye OEToolkits" 2.0.7 "C1CCN(CC1)c2c3c(c(nc(n3)N(CCO)CCO)N4CCCCC4)nc(n2)N(CCO)CCO" # _pdbx_chem_comp_identifier.comp_id H9F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[2-[bis(2-hydroxyethyl)amino]-4,8-di(piperidin-1-yl)pyrimido[5,4-d]pyrimidin-6-yl]-(2-hydroxyethyl)amino]ethanol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site H9F "Create component" 2020-12-04 PDBJ H9F "Initial release" 2021-12-08 RCSB ##