data_HD2 # _chem_comp.id HD2 _chem_comp.name "4-cyclopentyl-N-[(1S,3R)-5-oxidanyl-2-adamantyl]-2-[[(3S)-oxolan-3-yl]amino]pyrimidine-5-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H34 N4 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-09-20 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 426.552 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HD2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4BB5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HD2 C1 C1 C 0 1 Y N N -13.130 -2.610 -78.155 1.093 0.929 0.008 C1 HD2 1 HD2 C2 C2 C 0 1 Y N N -14.010 -1.826 -77.447 0.645 -0.390 -0.146 C2 HD2 2 HD2 C3 C3 C 0 1 Y N N -14.517 -0.703 -78.075 1.596 -1.418 -0.151 C3 HD2 3 HD2 N4 N4 N 0 1 Y N N -14.152 -0.398 -79.322 2.872 -1.110 -0.012 N4 HD2 4 HD2 C5 C5 C 0 1 Y N N -13.313 -1.229 -79.949 3.257 0.152 0.132 C5 HD2 5 HD2 N6 N6 N 0 1 Y N N -12.770 -2.329 -79.409 2.386 1.153 0.141 N6 HD2 6 HD2 N7 N7 N 0 1 N N N -12.929 -0.881 -81.244 4.600 0.430 0.275 N7 HD2 7 HD2 C8 C8 C 0 1 N N N -15.454 0.274 -77.444 1.170 -2.854 -0.312 C8 HD2 8 HD2 C9 C9 C 0 1 N N N -16.828 0.161 -78.067 1.046 -3.539 1.065 C9 HD2 9 HD2 C10 C10 C 0 1 N N N -17.302 1.567 -78.316 1.559 -4.979 0.888 C10 HD2 10 HD2 C11 C11 C 0 1 N N N -16.104 2.496 -78.188 1.975 -5.119 -0.591 C11 HD2 11 HD2 C12 C12 C 0 1 N N N -14.935 1.673 -77.698 2.267 -3.667 -1.043 C12 HD2 12 HD2 C13 C13 C 0 1 N N N -14.340 -2.223 -76.079 -0.792 -0.688 -0.298 C13 HD2 13 HD2 O14 O14 O 0 1 N N N -13.431 -2.423 -75.279 -1.175 -1.842 -0.316 O14 HD2 14 HD2 N15 N15 N 0 1 N N N -15.697 -2.343 -75.883 -1.681 0.319 -0.417 N15 HD2 15 HD2 C16 C16 C 0 1 N N N -16.228 -2.818 -74.636 -3.107 0.023 -0.568 C16 HD2 16 HD2 C17 C17 C 0 1 N N R -17.548 -3.585 -74.814 -3.797 1.187 -1.281 C17 HD2 17 HD2 C18 C18 C 0 1 N N N -18.709 -2.622 -75.087 -3.626 2.464 -0.456 C18 HD2 18 HD2 C19 C19 C 0 1 N N N -18.841 -1.612 -73.935 -4.255 2.268 0.925 C19 HD2 19 HD2 C20 C20 C 0 1 N N N -17.536 -0.796 -73.843 -3.565 1.103 1.638 C20 HD2 20 HD2 C21 C21 C 0 1 N N S -16.353 -1.730 -73.550 -3.736 -0.174 0.813 C21 HD2 21 HD2 C22 C22 C 0 1 N N N -16.614 -2.444 -72.222 -5.227 -0.483 0.656 C22 HD2 22 HD2 C23 C23 C 0 1 N N N -17.898 -3.289 -72.341 -5.916 0.681 -0.058 C23 HD2 23 HD2 C24 C24 C 0 1 N N N -19.097 -2.366 -72.617 -5.745 1.959 0.767 C24 HD2 24 HD2 C25 C25 C 0 1 N N N -17.801 -4.308 -73.486 -5.287 0.878 -1.439 C25 HD2 25 HD2 O26 O26 O 0 1 N N N -18.033 -4.030 -71.131 -7.308 0.393 -0.205 O26 HD2 26 HD2 C27 C27 C 0 1 N N S -13.881 -1.050 -82.322 5.048 1.816 0.434 C27 HD2 27 HD2 C28 C28 C 0 1 N N N -15.335 -1.202 -81.963 6.403 1.865 1.174 C28 HD2 28 HD2 C29 C29 C 0 1 N N N -16.058 -0.260 -82.868 7.363 2.522 0.158 C29 HD2 29 HD2 O30 O30 O 0 1 N N N -15.099 0.311 -83.750 6.505 3.285 -0.719 O30 HD2 30 HD2 C31 C31 C 0 1 N N N -13.812 0.188 -83.154 5.349 2.449 -0.943 C31 HD2 31 HD2 H1 H1 H 0 1 N N N -12.715 -3.486 -77.679 0.391 1.749 0.012 H1 HD2 32 HD2 H8 H8 H 0 1 N N N -15.519 0.091 -76.361 0.225 -2.912 -0.853 H8 HD2 33 HD2 H7 H7 H 0 1 N N N -12.674 0.086 -81.225 5.248 -0.292 0.270 H7 HD2 34 HD2 H27 H27 H 0 1 N N N -13.581 -1.909 -82.941 4.299 2.399 0.969 H27 HD2 35 HD2 H91C H91C H 0 0 N N N -16.771 -0.394 -79.015 1.657 -3.013 1.799 H91C HD2 36 HD2 H92C H92C H 0 0 N N N -17.515 -0.356 -77.381 0.004 -3.550 1.385 H92C HD2 37 HD2 H121 H121 H 0 0 N N N -14.535 2.102 -76.768 2.164 -3.571 -2.124 H121 HD2 38 HD2 H122 H122 H 0 0 N N N -14.143 1.649 -78.461 3.260 -3.354 -0.719 H122 HD2 39 HD2 H101 H101 H 0 0 N N N -17.728 1.644 -79.327 2.418 -5.152 1.536 H101 HD2 40 HD2 H102 H102 H 0 0 N N N -18.067 1.840 -77.574 0.765 -5.689 1.121 H102 HD2 41 HD2 H111 H111 H 0 0 N N N -15.867 2.938 -79.167 2.872 -5.734 -0.678 H111 HD2 42 HD2 H112 H112 H 0 0 N N N -16.326 3.297 -77.468 1.161 -5.545 -1.178 H112 HD2 43 HD2 H15 H15 H 0 1 N N N -16.324 -2.095 -76.622 -1.375 1.239 -0.402 H15 HD2 44 HD2 H16 H16 H 0 1 N N N -15.509 -3.550 -74.241 -3.230 -0.887 -1.155 H16 HD2 45 HD2 H17 H17 H 0 1 N N N -17.457 -4.314 -75.633 -3.349 1.327 -2.265 H17 HD2 46 HD2 H21 H21 H 0 1 N N N -15.420 -1.150 -73.491 -3.245 -1.004 1.322 H21 HD2 47 HD2 H181 H181 H 0 0 N N N -18.519 -2.080 -76.025 -2.564 2.684 -0.344 H181 HD2 48 HD2 H182 H182 H 0 0 N N N -19.644 -3.195 -75.177 -4.117 3.294 -0.965 H182 HD2 49 HD2 H251 H251 H 0 0 N N N -18.743 -4.872 -73.552 -5.779 1.707 -1.947 H251 HD2 50 HD2 H252 H252 H 0 0 N N N -16.972 -5.002 -73.286 -5.409 -0.032 -2.026 H252 HD2 51 HD2 H19 H19 H 0 1 N N N -19.683 -0.933 -74.138 -4.133 3.177 1.512 H19 HD2 52 HD2 H201 H201 H 0 0 N N N -17.363 -0.277 -74.797 -2.503 1.323 1.750 H201 HD2 53 HD2 H202 H202 H 0 0 N N N -17.625 -0.056 -73.034 -4.013 0.963 2.622 H202 HD2 54 HD2 H241 H241 H 0 0 N N N -19.208 -1.646 -71.793 -6.193 1.818 1.751 H241 HD2 55 HD2 H242 H242 H 0 0 N N N -20.015 -2.966 -72.705 -6.236 2.788 0.259 H242 HD2 56 HD2 H221 H221 H 0 0 N N N -15.763 -3.100 -71.984 -5.349 -1.393 0.068 H221 HD2 57 HD2 H222 H222 H 0 0 N N N -16.737 -1.699 -71.422 -5.675 -0.623 1.639 H222 HD2 58 HD2 H26 H26 H 0 1 N N N -18.818 -4.564 -71.172 -7.809 1.089 -0.651 H26 HD2 59 HD2 H281 H281 H 0 0 N N N -15.669 -2.236 -82.134 6.324 2.475 2.075 H281 HD2 60 HD2 H282 H282 H 0 0 N N N -15.503 -0.932 -80.910 6.740 0.859 1.422 H282 HD2 61 HD2 H311 H311 H 0 0 N N N -13.593 1.063 -82.525 5.577 1.674 -1.675 H311 HD2 62 HD2 H312 H312 H 0 0 N N N -13.037 0.090 -83.928 4.504 3.051 -1.276 H312 HD2 63 HD2 H291 H291 H 0 0 N N N -16.820 -0.805 -83.445 8.064 3.181 0.669 H291 HD2 64 HD2 H292 H292 H 0 0 N N N -16.542 0.531 -82.277 7.899 1.759 -0.406 H292 HD2 65 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HD2 C1 C2 SING Y N 1 HD2 C1 N6 DOUB Y N 2 HD2 C2 C3 DOUB Y N 3 HD2 C2 C13 SING N N 4 HD2 C3 N4 SING Y N 5 HD2 C3 C8 SING N N 6 HD2 N4 C5 DOUB Y N 7 HD2 C5 N6 SING Y N 8 HD2 C5 N7 SING N N 9 HD2 N7 C27 SING N N 10 HD2 C8 C9 SING N N 11 HD2 C8 C12 SING N N 12 HD2 C9 C10 SING N N 13 HD2 C10 C11 SING N N 14 HD2 C11 C12 SING N N 15 HD2 C13 O14 DOUB N N 16 HD2 C13 N15 SING N N 17 HD2 N15 C16 SING N N 18 HD2 C16 C17 SING N N 19 HD2 C16 C21 SING N N 20 HD2 C17 C18 SING N N 21 HD2 C17 C25 SING N N 22 HD2 C18 C19 SING N N 23 HD2 C19 C20 SING N N 24 HD2 C19 C24 SING N N 25 HD2 C20 C21 SING N N 26 HD2 C21 C22 SING N N 27 HD2 C22 C23 SING N N 28 HD2 C23 C24 SING N N 29 HD2 C23 C25 SING N N 30 HD2 C23 O26 SING N N 31 HD2 C27 C28 SING N N 32 HD2 C27 C31 SING N N 33 HD2 C28 C29 SING N N 34 HD2 C29 O30 SING N N 35 HD2 O30 C31 SING N N 36 HD2 C1 H1 SING N N 37 HD2 C8 H8 SING N N 38 HD2 N7 H7 SING N N 39 HD2 C27 H27 SING N N 40 HD2 C9 H91C SING N N 41 HD2 C9 H92C SING N N 42 HD2 C12 H121 SING N N 43 HD2 C12 H122 SING N N 44 HD2 C10 H101 SING N N 45 HD2 C10 H102 SING N N 46 HD2 C11 H111 SING N N 47 HD2 C11 H112 SING N N 48 HD2 N15 H15 SING N N 49 HD2 C16 H16 SING N N 50 HD2 C17 H17 SING N N 51 HD2 C21 H21 SING N N 52 HD2 C18 H181 SING N N 53 HD2 C18 H182 SING N N 54 HD2 C25 H251 SING N N 55 HD2 C25 H252 SING N N 56 HD2 C19 H19 SING N N 57 HD2 C20 H201 SING N N 58 HD2 C20 H202 SING N N 59 HD2 C24 H241 SING N N 60 HD2 C24 H242 SING N N 61 HD2 C22 H221 SING N N 62 HD2 C22 H222 SING N N 63 HD2 O26 H26 SING N N 64 HD2 C28 H281 SING N N 65 HD2 C28 H282 SING N N 66 HD2 C31 H311 SING N N 67 HD2 C31 H312 SING N N 68 HD2 C29 H291 SING N N 69 HD2 C29 H292 SING N N 70 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HD2 SMILES ACDLabs 12.01 "O=C(NC3C2CC1CC3CC(O)(C1)C2)c4cnc(nc4C5CCCC5)NC6CCOC6" HD2 InChI InChI 1.03 "InChI=1S/C24H34N4O3/c29-22(27-20-16-7-14-8-17(20)11-24(30,9-14)10-16)19-12-25-23(26-18-5-6-31-13-18)28-21(19)15-3-1-2-4-15/h12,14-18,20,30H,1-11,13H2,(H,27,29)(H,25,26,28)/t14-,16-,17+,18-,20-,24-/m0/s1" HD2 InChIKey InChI 1.03 VMTZDIHMLVWUQZ-GXLRSYGRSA-N HD2 SMILES_CANONICAL CACTVS 3.385 "OC12CC3C[C@H](C1)C(NC(=O)c4cnc(N[C@H]5CCOC5)nc4C6CCCC6)[C@@H](C3)C2" HD2 SMILES CACTVS 3.385 "OC12CC3C[CH](C1)C(NC(=O)c4cnc(N[CH]5CCOC5)nc4C6CCCC6)[CH](C3)C2" HD2 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "c1c(c(nc(n1)N[C@H]2CCOC2)C3CCCC3)C(=O)NC4[C@@H]5CC6C[C@H]4CC(C5)(C6)O" HD2 SMILES "OpenEye OEToolkits" 1.9.2 "c1c(c(nc(n1)NC2CCOC2)C3CCCC3)C(=O)NC4C5CC6CC4CC(C6)(C5)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HD2 "SYSTEMATIC NAME" ACDLabs 12.01 "4-cyclopentyl-N-[(1R,2s,3S,5s,7s)-5-hydroxytricyclo[3.3.1.1~3,7~]dec-2-yl]-2-[(3S)-tetrahydrofuran-3-ylamino]pyrimidine-5-carboxamide" HD2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "4-cyclopentyl-N-[(1S,3R)-5-oxidanyl-2-adamantyl]-2-[[(3S)-oxolan-3-yl]amino]pyrimidine-5-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HD2 "Create component" 2012-09-20 EBI HD2 "Initial release" 2012-11-23 RCSB HD2 "Modify descriptor" 2014-09-05 RCSB #