data_HD3 # _chem_comp.id HD3 _chem_comp.name "2-azanyl-7-[(2R,3R,4S,5R)-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-3H-pyrrolo[2,3-d]pyrimidin-4-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H14 N4 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-18 _chem_comp.pdbx_modified_date 2022-01-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 282.253 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HD3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DOW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HD3 C05 C1 C 0 1 Y N N -49.749 -16.897 -3.432 2.290 1.192 0.185 C05 HD3 1 HD3 C06 C2 C 0 1 N N N -50.712 -16.499 -2.308 3.682 0.951 0.187 C06 HD3 2 HD3 C01 C3 C 0 1 Y N N -49.687 -16.518 -4.747 1.450 2.354 0.468 C01 HD3 3 HD3 C02 C4 C 0 1 Y N N -48.595 -17.183 -5.328 0.177 1.962 0.290 C02 HD3 4 HD3 C04 C5 C 0 1 Y N N -48.709 -17.791 -3.198 1.418 0.149 -0.156 C04 HD3 5 HD3 C12 C6 C 0 1 N N R -46.898 -18.760 -4.622 -1.067 -0.124 -0.366 C12 HD3 6 HD3 C09 C7 C 0 1 N N N -49.456 -18.022 -0.754 3.223 -1.263 -0.469 C09 HD3 7 HD3 C13 C8 C 0 1 N N R -45.472 -17.939 -4.321 -1.524 -0.904 0.894 C13 HD3 8 HD3 C14 C9 C 0 1 N N S -44.591 -18.865 -4.421 -3.039 -1.087 0.630 C14 HD3 9 HD3 C15 C10 C 0 1 N N R -45.329 -20.165 -3.881 -3.379 0.011 -0.396 C15 HD3 10 HD3 C17 C11 C 0 1 N N N -44.851 -20.523 -2.651 -4.463 0.932 0.168 C17 HD3 11 HD3 N03 N1 N 0 1 Y N N -48.032 -17.937 -4.382 0.149 0.643 -0.085 N03 HD3 12 HD3 N08 N2 N 0 1 N N N -50.543 -17.072 -1.000 4.117 -0.286 -0.144 N08 HD3 13 HD3 N10 N3 N 0 1 N N N -48.531 -18.387 -1.827 1.927 -1.051 -0.472 N10 HD3 14 HD3 N11 N4 N 0 1 N N N -49.278 -18.588 0.560 3.693 -2.509 -0.801 N11 HD3 15 HD3 O07 O1 O 0 1 N N N -51.588 -15.743 -2.523 4.470 1.834 0.478 O07 HD3 16 HD3 O16 O2 O 0 1 N N N -46.838 -19.770 -3.812 -2.176 0.761 -0.634 O16 HD3 17 HD3 O18 O3 O 0 1 N N N -45.696 -19.986 -1.647 -4.855 1.875 -0.831 O18 HD3 18 HD3 O19 O4 O 0 1 N N N -44.228 -19.089 -5.841 -3.298 -2.381 0.082 O19 HD3 19 HD3 O20 O5 O 0 1 N N N -45.264 -16.874 -5.302 -0.864 -2.169 0.978 O20 HD3 20 HD3 H1 H1 H 0 1 N N N -50.356 -15.833 -5.246 1.786 3.336 0.765 H1 HD3 21 HD3 H2 H2 H 0 1 N N N -48.270 -17.099 -6.354 -0.691 2.591 0.421 H2 HD3 22 HD3 H3 H3 H 0 1 N N N -46.873 -19.072 -5.677 -0.906 -0.805 -1.201 H3 HD3 23 HD3 H4 H4 H 0 1 N N N -45.541 -17.514 -3.309 -1.355 -0.318 1.797 H4 HD3 24 HD3 H5 H5 H 0 1 N N N -43.689 -18.688 -3.817 -3.606 -0.940 1.549 H5 HD3 25 HD3 H6 H6 H 0 1 N N N -45.204 -20.972 -4.618 -3.723 -0.443 -1.325 H6 HD3 26 HD3 H7 H7 H 0 1 N N N -44.833 -21.620 -2.568 -5.327 0.337 0.465 H7 HD3 27 HD3 H8 H8 H 0 1 N N N -43.832 -20.129 -2.524 -4.073 1.464 1.036 H8 HD3 28 HD3 H9 H9 H 0 1 N N N -51.167 -16.822 -0.259 5.068 -0.478 -0.152 H9 HD3 29 HD3 H10 H10 H 0 1 N N N -48.527 -19.225 0.732 4.647 -2.683 -0.803 H10 HD3 30 HD3 H11 H11 H 0 1 N N N -49.906 -18.344 1.299 3.071 -3.216 -1.035 H11 HD3 31 HD3 H12 H12 H 0 1 N N N -45.367 -20.233 -0.791 -5.541 2.492 -0.543 H12 HD3 32 HD3 H13 H13 H 0 1 N N N -43.575 -19.777 -5.897 -4.232 -2.550 -0.102 H13 HD3 33 HD3 H14 H14 H 0 1 N N N -44.450 -16.422 -5.112 -1.117 -2.694 1.749 H14 HD3 34 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HD3 O19 C14 SING N N 1 HD3 C02 C01 DOUB Y N 2 HD3 C02 N03 SING Y N 3 HD3 O20 C13 SING N N 4 HD3 C01 C05 SING Y N 5 HD3 C12 N03 SING N N 6 HD3 C12 C13 SING N N 7 HD3 C12 O16 SING N N 8 HD3 C14 C13 SING N N 9 HD3 C14 C15 SING N N 10 HD3 N03 C04 SING Y N 11 HD3 C15 O16 SING N N 12 HD3 C15 C17 SING N N 13 HD3 C05 C04 DOUB Y N 14 HD3 C05 C06 SING N N 15 HD3 C04 N10 SING N N 16 HD3 C17 O18 SING N N 17 HD3 O07 C06 DOUB N N 18 HD3 C06 N08 SING N N 19 HD3 N10 C09 DOUB N N 20 HD3 N08 C09 SING N N 21 HD3 C09 N11 SING N N 22 HD3 C01 H1 SING N N 23 HD3 C02 H2 SING N N 24 HD3 C12 H3 SING N N 25 HD3 C13 H4 SING N N 26 HD3 C14 H5 SING N N 27 HD3 C15 H6 SING N N 28 HD3 C17 H7 SING N N 29 HD3 C17 H8 SING N N 30 HD3 N08 H9 SING N N 31 HD3 N11 H10 SING N N 32 HD3 N11 H11 SING N N 33 HD3 O18 H12 SING N N 34 HD3 O19 H13 SING N N 35 HD3 O20 H14 SING N N 36 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HD3 InChI InChI 1.03 "InChI=1S/C11H14N4O5/c12-11-13-8-4(9(19)14-11)1-2-15(8)10-7(18)6(17)5(3-16)20-10/h1-2,5-7,10,16-18H,3H2,(H3,12,13,14,19)/t5-,6-,7-,10-/m1/s1" HD3 InChIKey InChI 1.03 JRYMOPZHXMVHTA-DAGMQNCNSA-N HD3 SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(ccc2C(=O)N1)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O" HD3 SMILES CACTVS 3.385 "NC1=Nc2n(ccc2C(=O)N1)[CH]3O[CH](CO)[CH](O)[CH]3O" HD3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cn(c2c1C(=O)NC(=N2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O" HD3 SMILES "OpenEye OEToolkits" 2.0.7 "c1cn(c2c1C(=O)NC(=N2)N)C3C(C(C(O3)CO)O)O" # _pdbx_chem_comp_identifier.comp_id HD3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-azanyl-7-[(2~{R},3~{R},4~{S},5~{R})-5-(hydroxymethyl)-3,4-bis(oxidanyl)oxolan-2-yl]-3~{H}-pyrrolo[2,3-d]pyrimidin-4-one" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HD3 "Create component" 2020-12-18 PDBJ HD3 "Initial release" 2022-02-02 RCSB ##