data_HD9 # _chem_comp.id HD9 _chem_comp.name "(2R,3R,4S,5R)-2-(2-azanyl-6-methoxy-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H15 N5 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-18 _chem_comp.pdbx_modified_date 2022-01-28 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 297.267 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HD9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DOY _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HD9 C01 C1 C 0 1 N N N 18.823 -38.128 2.402 5.709 -1.201 -0.368 C01 HD9 1 HD9 C03 C2 C 0 1 Y N N 18.483 -35.791 2.646 3.414 -0.654 -0.106 C03 HD9 2 HD9 C05 C3 C 0 1 Y N N 18.542 -33.470 2.660 2.891 1.504 0.536 C05 HD9 3 HD9 C07 C4 C 0 1 Y N N 18.810 -34.583 4.701 1.131 0.057 0.208 C07 HD9 4 HD9 C08 C5 C 0 1 Y N N 18.684 -35.817 4.067 2.044 -0.958 -0.126 C08 HD9 5 HD9 C10 C6 C 0 1 Y N N 18.990 -36.101 6.249 0.053 -1.807 -0.273 C10 HD9 6 HD9 C12 C7 C 0 1 N N R 19.165 -33.799 7.004 -1.394 0.162 0.359 C12 HD9 7 HD9 C13 C8 C 0 1 N N R 20.343 -33.261 6.882 -1.902 0.869 -0.923 C13 HD9 8 HD9 C14 C9 C 0 1 N N S 20.118 -31.871 7.505 -3.429 0.936 -0.673 C14 HD9 9 HD9 C15 C10 C 0 1 N N R 18.746 -31.462 6.889 -3.687 -0.159 0.380 C15 HD9 10 HD9 C17 C11 C 0 1 N N N 18.982 -30.738 5.502 -4.692 -1.177 -0.163 C17 HD9 11 HD9 N04 N1 N 0 1 Y N N 18.417 -34.649 2.001 3.787 0.575 0.227 N04 HD9 12 HD9 N06 N2 N 0 1 Y N N 18.734 -33.444 3.951 1.590 1.261 0.530 N06 HD9 13 HD9 N09 N3 N 0 1 Y N N 18.795 -36.728 5.038 1.320 -2.069 -0.409 N09 HD9 14 HD9 N11 N4 N 0 1 Y N N 18.995 -34.802 6.032 -0.116 -0.508 0.107 N11 HD9 15 HD9 N21 N5 N 0 1 N N N 18.470 -32.217 1.897 3.332 2.772 0.878 N21 HD9 16 HD9 O02 O1 O 0 1 N N N 18.327 -36.946 1.839 4.337 -1.596 -0.414 O02 HD9 17 HD9 O16 O2 O 0 1 N N N 18.103 -32.576 6.722 -2.429 -0.803 0.645 O16 HD9 18 HD9 O18 O3 O 0 1 N N N 17.828 -29.948 5.183 -5.014 -2.122 0.859 O18 HD9 19 HD9 O19 O4 O 0 1 N N N 20.011 -31.976 8.811 -3.796 2.219 -0.161 O19 HD9 20 HD9 O20 O5 O 0 1 N N N 21.356 -34.043 7.667 -1.346 2.181 -1.036 O20 HD9 21 HD9 H1 H1 H 0 1 N N N 18.657 -38.964 1.706 5.957 -0.867 0.640 H1 HD9 22 HD9 H2 H2 H 0 1 N N N 19.901 -38.019 2.594 6.340 -2.048 -0.635 H2 HD9 23 HD9 H3 H3 H 0 1 N N N 18.301 -38.330 3.349 5.876 -0.386 -1.072 H3 HD9 24 HD9 H4 H4 H 0 1 N N N 19.116 -36.587 7.205 -0.747 -2.514 -0.437 H4 HD9 25 HD9 H5 H5 H 0 1 N N N 18.974 -34.189 8.015 -1.297 0.875 1.178 H5 HD9 26 HD9 H6 H6 H 0 1 N N N 20.671 -33.152 5.838 -1.679 0.275 -1.809 H6 HD9 27 HD9 H7 H7 H 0 1 N N N 20.902 -31.174 7.175 -3.976 0.722 -1.591 H7 HD9 28 HD9 H8 H8 H 0 1 N N N 18.237 -30.766 7.572 -4.073 0.290 1.295 H8 HD9 29 HD9 H9 H9 H 0 1 N N N 19.142 -31.491 4.716 -5.598 -0.660 -0.479 H9 HD9 30 HD9 H10 H10 H 0 1 N N N 19.866 -30.087 5.572 -4.255 -1.698 -1.015 H10 HD9 31 HD9 H11 H11 H 0 1 N N N 18.329 -32.423 0.929 2.692 3.464 1.107 H11 HD9 32 HD9 H12 H12 H 0 1 N N N 17.708 -31.665 2.235 4.282 2.968 0.888 H12 HD9 33 HD9 H13 H13 H 0 1 N N N 17.963 -29.510 4.351 -5.647 -2.799 0.584 H13 HD9 34 HD9 H14 H14 H 0 1 N N N 19.872 -31.115 9.188 -4.742 2.316 0.014 H14 HD9 35 HD9 H15 H15 H 0 1 N N N 22.211 -33.641 7.570 -1.635 2.664 -1.823 H15 HD9 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HD9 O02 C01 SING N N 1 HD9 O02 C03 SING N N 2 HD9 N21 C05 SING N N 3 HD9 N04 C03 DOUB Y N 4 HD9 N04 C05 SING Y N 5 HD9 C03 C08 SING Y N 6 HD9 C05 N06 DOUB Y N 7 HD9 N06 C07 SING Y N 8 HD9 C08 C07 DOUB Y N 9 HD9 C08 N09 SING Y N 10 HD9 C07 N11 SING Y N 11 HD9 N09 C10 DOUB Y N 12 HD9 O18 C17 SING N N 13 HD9 C17 C15 SING N N 14 HD9 N11 C10 SING Y N 15 HD9 N11 C12 SING N N 16 HD9 O16 C15 SING N N 17 HD9 O16 C12 SING N N 18 HD9 C13 C12 SING N N 19 HD9 C13 C14 SING N N 20 HD9 C13 O20 SING N N 21 HD9 C15 C14 SING N N 22 HD9 C14 O19 SING N N 23 HD9 C01 H1 SING N N 24 HD9 C01 H2 SING N N 25 HD9 C01 H3 SING N N 26 HD9 C10 H4 SING N N 27 HD9 C12 H5 SING N N 28 HD9 C13 H6 SING N N 29 HD9 C14 H7 SING N N 30 HD9 C15 H8 SING N N 31 HD9 C17 H9 SING N N 32 HD9 C17 H10 SING N N 33 HD9 N21 H11 SING N N 34 HD9 N21 H12 SING N N 35 HD9 O18 H13 SING N N 36 HD9 O19 H14 SING N N 37 HD9 O20 H15 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HD9 InChI InChI 1.03 "InChI=1S/C11H15N5O5/c1-20-9-5-8(14-11(12)15-9)16(3-13-5)10-7(19)6(18)4(2-17)21-10/h3-4,6-7,10,17-19H,2H2,1H3,(H2,12,14,15)/t4-,6-,7-,10-/m1/s1" HD9 InChIKey InChI 1.03 IXOXBSCIXZEQEQ-KQYNXXCUSA-N HD9 SMILES_CANONICAL CACTVS 3.385 "COc1nc(N)nc2n(cnc12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O" HD9 SMILES CACTVS 3.385 "COc1nc(N)nc2n(cnc12)[CH]3O[CH](CO)[CH](O)[CH]3O" HD9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "COc1c2c(nc(n1)N)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O" HD9 SMILES "OpenEye OEToolkits" 2.0.7 "COc1c2c(nc(n1)N)n(cn2)C3C(C(C(O3)CO)O)O" # _pdbx_chem_comp_identifier.comp_id HD9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},3~{R},4~{S},5~{R})-2-(2-azanyl-6-methoxy-purin-9-yl)-5-(hydroxymethyl)oxolane-3,4-diol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HD9 "Create component" 2020-12-18 PDBJ HD9 "Initial release" 2022-02-02 RCSB ##