data_HDD
#
_chem_comp.id HDD
_chem_comp.name "CIS-HEME D HYDROXYCHLORIN GAMMA-SPIROLACTONE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C34 H32 Fe N4 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms HEME
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-08-22
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 632.487
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HDD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1GGJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HDD FE FE FE 0 0 N N N -1.372 4.997 -8.363 -0.981 0.084 -0.437 FE HDD 1
HDD CHA CHA C 0 1 N N N 1.937 5.951 -8.038 2.325 0.234 -0.549 CHA HDD 2
HDD CHB CHB C 0 1 N N N -1.768 7.424 -10.772 -1.307 3.318 -1.126 CHB HDD 3
HDD CHC CHC C 0 1 N N N -4.501 3.711 -8.970 -4.032 0.182 0.918 CHC HDD 4
HDD CHD CHD C 0 1 N N N -0.984 2.863 -5.612 -0.781 -3.205 -0.136 CHD HDD 5
HDD NA "N A" N 0 1 Y N N -0.087 6.296 -9.348 0.224 1.526 -0.489 NA HDD 6
HDD C1A C1A C 0 1 Y N N 1.199 6.597 -8.974 1.573 1.458 -0.359 C1A HDD 7
HDD C2A C2A C 0 1 Y N N 1.568 7.748 -9.842 2.062 2.723 -0.059 C2A HDD 8
HDD C3A C3A C 0 1 Y N N 0.620 8.114 -10.701 1.004 3.598 -0.196 C3A HDD 9
HDD C4A C4A C 0 1 Y N N -0.502 7.228 -10.312 -0.086 2.844 -0.637 C4A HDD 10
HDD CMA CMA C 0 1 N N N 0.554 9.266 -11.719 1.032 5.088 0.015 CMA HDD 11
HDD CAA CAA C 0 1 N N N 3.007 8.262 -9.885 3.474 3.062 0.336 CAA HDD 12
HDD CBA CBA C 0 1 N N N 3.216 9.566 -8.987 3.612 2.982 1.858 CBA HDD 13
HDD CGA CGA C 0 1 N N N 4.682 9.963 -9.340 5.026 3.322 2.253 CGA HDD 14
HDD O1A O1A O 0 1 N N N 5.443 9.609 -8.422 5.840 3.599 1.405 O1A HDD 15
HDD O2A O2A O 0 1 N N N 4.810 10.242 -10.561 5.381 3.316 3.548 O2A HDD 16
HDD NB "N B" N 0 1 Y N N -2.810 5.478 -9.643 -2.424 1.280 -0.502 NB HDD 17
HDD C1B C1B C 0 1 Y N N -2.754 6.459 -10.551 -2.426 2.539 -1.045 C1B HDD 18
HDD C2B C2B C 0 1 Y N N -4.055 6.550 -11.258 -3.750 2.905 -1.389 C2B HDD 19
HDD C3B C3B C 0 1 Y N N -4.746 5.614 -10.585 -4.573 2.032 -0.723 C3B HDD 20
HDD C4B C4B C 0 1 Y N N -3.970 4.733 -9.744 -3.675 1.100 0.003 C4B HDD 21
HDD CMB CMB C 0 1 N N N -4.588 7.847 -11.935 -4.162 4.027 -2.303 CMB HDD 22
HDD CAB CAB C 0 1 N N N -6.242 5.252 -10.731 -6.043 2.016 -0.718 CAB HDD 23
HDD CBB CBB C 0 1 N N N -7.064 6.198 -10.906 -6.695 1.029 -0.112 CBB HDD 24
HDD NC "N C" N 0 1 Y N N -2.416 3.341 -7.640 -2.044 -1.168 0.486 NC HDD 25
HDD C1C C1C C 0 1 Y N N -3.765 3.194 -7.940 -3.199 -0.920 1.155 C1C HDD 26
HDD C2C C2C C 0 1 Y N N -4.307 2.223 -6.986 -3.455 -1.966 2.036 C2C HDD 27
HDD C3C C3C C 0 1 Y N N -3.327 2.053 -6.068 -2.565 -2.988 1.683 C3C HDD 28
HDD C4C C4C C 0 1 Y N N -2.171 2.893 -6.376 -1.776 -2.481 0.630 C4C HDD 29
HDD CMC CMC C 0 1 N N N -5.737 1.617 -6.933 -4.530 -2.019 3.086 CMC HDD 30
HDD CAC CAC C 0 1 N N N -3.343 1.371 -4.698 -2.464 -4.328 2.280 CAC HDD 31
HDD CBC CBC C 0 1 N N N -4.451 0.828 -4.392 -2.387 -4.464 3.601 CBC HDD 32
HDD ND "N D" N 0 1 N N N 0.309 4.433 -7.215 0.385 -1.184 -0.666 ND HDD 33
HDD C1D C1D C 0 1 N N N 0.033 3.611 -6.138 0.192 -2.544 -0.736 C1D HDD 34
HDD C2D C2D C 0 1 N N S 1.327 3.613 -5.289 1.320 -3.137 -1.574 C2D HDD 35
HDD C3D C3D C 0 1 N N R 2.152 4.425 -5.806 2.459 -2.196 -1.191 C3D HDD 36
HDD C4D C4D C 0 1 N N N 1.494 5.042 -7.021 1.725 -0.927 -0.753 C4D HDD 37
HDD CMD CMD C 0 1 N N N 1.721 2.152 -4.934 1.006 -3.038 -3.059 CMD HDD 38
HDD CAD CAD C 0 1 N N N 3.437 4.032 -6.622 3.371 -1.896 -2.381 CAD HDD 39
HDD CBD CBD C 0 1 N N N 4.617 4.653 -5.894 4.762 -2.331 -1.886 CBD HDD 40
HDD CGD CGD C 0 1 N N N 4.079 5.739 -5.080 4.557 -2.828 -0.473 CGD HDD 41
HDD O1D O1D O 0 1 N N N 2.780 5.697 -5.156 3.269 -2.719 -0.123 O1D HDD 42
HDD O2D O2D O 0 1 N N N 4.619 6.672 -4.565 5.436 -3.266 0.245 O2D HDD 43
HDD OND OND O 0 1 N N N 1.046 4.145 -3.894 1.603 -4.471 -1.182 OND HDD 44
HDD HHA HHA H 0 1 N N N 3.011 6.190 -8.111 3.410 0.274 -0.520 HHA HDD 45
HDD HHB HHB H 0 1 N N N -1.992 8.355 -11.318 -1.364 4.302 -1.572 HHB HDD 46
HDD HHC HHC H 0 1 N N N -5.508 3.309 -9.173 -4.955 0.292 1.471 HHC HDD 47
HDD HHD HHD H 0 1 N N N -0.860 2.297 -4.673 -0.839 -4.283 -0.213 HHD HDD 48
HDD HMA1 1HMA H 0 0 N N N -0.240 9.572 -12.438 1.278 5.584 -0.924 HMA1 HDD 49
HDD HMA2 2HMA H 0 0 N N N 0.756 10.183 -11.118 0.053 5.425 0.358 HMA2 HDD 50
HDD HMA3 3HMA H 0 0 N N N 1.466 9.137 -12.346 1.783 5.335 0.765 HMA3 HDD 51
HDD HAA1 1HAA H 0 0 N N N 3.728 7.460 -9.602 4.161 2.354 -0.128 HAA1 HDD 52
HDD HAA2 2HAA H 0 0 N N N 3.338 8.439 -10.934 3.713 4.072 0.002 HAA2 HDD 53
HDD HBA1 1HBA H 0 0 N N N 2.458 10.370 -9.135 2.925 3.690 2.322 HBA1 HDD 54
HDD HBA2 2HBA H 0 0 N N N 3.010 9.430 -7.899 3.373 1.973 2.192 HBA2 HDD 55
HDD H2A H2A H 0 1 N N N 5.703 10.483 -10.776 6.288 3.534 3.801 H2A HDD 56
HDD HMB1 1HMB H 0 0 N N N -5.565 7.915 -12.466 -4.231 3.656 -3.325 HMB1 HDD 57
HDD HMB2 2HMB H 0 0 N N N -4.579 8.648 -11.159 -5.133 4.412 -1.990 HMB2 HDD 58
HDD HMB3 3HMB H 0 0 N N N -3.802 8.190 -12.648 -3.422 4.825 -2.255 HMB3 HDD 59
HDD HAB HAB H 0 1 N N N -6.747 4.271 -10.709 -6.593 2.806 -1.208 HAB HDD 60
HDD HBB1 1HBB H 0 0 N N N -6.558 7.178 -10.927 -7.771 1.069 -0.021 HBB1 HDD 61
HDD HBB2 2HBB H 0 0 N N N -8.131 5.939 -11.010 -6.150 0.188 0.291 HBB2 HDD 62
HDD HMC1 1HMC H 0 0 N N N -6.149 0.878 -6.207 -5.435 -2.448 2.658 HMC1 HDD 63
HDD HMC2 2HMC H 0 0 N N N -6.431 2.489 -6.900 -4.194 -2.636 3.919 HMC2 HDD 64
HDD HMC3 3HMC H 0 0 N N N -5.913 1.176 -7.942 -4.739 -1.010 3.443 HMC3 HDD 65
HDD HAC HAC H 0 1 N N N -2.556 1.270 -3.931 -2.451 -5.202 1.646 HAC HDD 66
HDD HBC1 1HBC H 0 0 N N N -5.237 0.928 -5.158 -2.399 -3.590 4.235 HBC1 HDD 67
HDD HBC2 2HBC H 0 0 N N N -4.462 0.336 -3.404 -2.313 -5.448 4.039 HBC2 HDD 68
HDD HMD1 1HMD H 0 0 N N N 2.653 2.153 -4.322 1.000 -1.990 -3.360 HMD1 HDD 69
HDD HMD2 2HMD H 0 0 N N N 0.890 1.602 -4.432 1.765 -3.576 -3.627 HMD2 HDD 70
HDD HMD3 3HMD H 0 0 N N N 1.814 1.509 -5.840 0.027 -3.477 -3.253 HMD3 HDD 71
HDD HAD1 1HAD H 0 0 N N N 3.542 2.932 -6.776 3.072 -2.478 -3.248 HAD1 HDD 72
HDD HAD2 2HAD H 0 0 N N N 3.381 4.318 -7.698 3.361 -0.833 -2.609 HAD2 HDD 73
HDD HBD1 1HBD H 0 0 N N N 5.211 3.914 -5.306 5.156 -3.129 -2.514 HBD1 HDD 74
HDD HBD2 2HBD H 0 0 N N N 5.435 4.978 -6.577 5.447 -1.483 -1.891 HBD2 HDD 75
HDD HND HND H 0 1 N N N 1.840 4.146 -3.372 0.797 -4.984 -1.335 HND HDD 76
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HDD FE NA SING N N 1
HDD FE NB SING N N 2
HDD FE NC SING N N 3
HDD FE ND SING N N 4
HDD CHA C1A SING N N 5
HDD CHA C4D DOUB N N 6
HDD CHA HHA SING N N 7
HDD CHB C4A SING N N 8
HDD CHB C1B DOUB N N 9
HDD CHB HHB SING N N 10
HDD CHC C4B DOUB N N 11
HDD CHC C1C SING N N 12
HDD CHC HHC SING N N 13
HDD CHD C4C SING N N 14
HDD CHD C1D DOUB N N 15
HDD CHD HHD SING N N 16
HDD NA C1A SING Y N 17
HDD NA C4A SING Y N 18
HDD C1A C2A DOUB Y N 19
HDD C2A C3A SING Y N 20
HDD C2A CAA SING N N 21
HDD C3A C4A DOUB Y N 22
HDD C3A CMA SING N N 23
HDD CMA HMA1 SING N N 24
HDD CMA HMA2 SING N N 25
HDD CMA HMA3 SING N N 26
HDD CAA CBA SING N N 27
HDD CAA HAA1 SING N N 28
HDD CAA HAA2 SING N N 29
HDD CBA CGA SING N N 30
HDD CBA HBA1 SING N N 31
HDD CBA HBA2 SING N N 32
HDD CGA O1A DOUB N N 33
HDD CGA O2A SING N N 34
HDD O2A H2A SING N N 35
HDD NB C1B SING Y N 36
HDD NB C4B SING Y N 37
HDD C1B C2B SING Y N 38
HDD C2B C3B DOUB Y N 39
HDD C2B CMB SING N N 40
HDD C3B C4B SING Y N 41
HDD C3B CAB SING N N 42
HDD CMB HMB1 SING N N 43
HDD CMB HMB2 SING N N 44
HDD CMB HMB3 SING N N 45
HDD CAB CBB DOUB N N 46
HDD CAB HAB SING N N 47
HDD CBB HBB1 SING N N 48
HDD CBB HBB2 SING N N 49
HDD NC C1C SING Y N 50
HDD NC C4C SING Y N 51
HDD C1C C2C DOUB Y N 52
HDD C2C C3C SING Y N 53
HDD C2C CMC SING N N 54
HDD C3C C4C DOUB Y N 55
HDD C3C CAC SING N N 56
HDD CMC HMC1 SING N N 57
HDD CMC HMC2 SING N N 58
HDD CMC HMC3 SING N N 59
HDD CAC CBC DOUB N N 60
HDD CAC HAC SING N N 61
HDD CBC HBC1 SING N N 62
HDD CBC HBC2 SING N N 63
HDD ND C1D SING N N 64
HDD ND C4D SING N N 65
HDD C1D C2D SING N N 66
HDD C2D C3D SING N N 67
HDD C2D CMD SING N N 68
HDD C2D OND SING N N 69
HDD C3D C4D SING N N 70
HDD C3D CAD SING N N 71
HDD C3D O1D SING N N 72
HDD CMD HMD1 SING N N 73
HDD CMD HMD2 SING N N 74
HDD CMD HMD3 SING N N 75
HDD CAD CBD SING N N 76
HDD CAD HAD1 SING N N 77
HDD CAD HAD2 SING N N 78
HDD CBD CGD SING N N 79
HDD CBD HBD1 SING N N 80
HDD CBD HBD2 SING N N 81
HDD CGD O1D SING N N 82
HDD CGD O2D DOUB N N 83
HDD OND HND SING N N 84
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HDD SMILES ACDLabs 10.04 "O=C(O)CCc1c(c2C=C7C(=C(\C=C)C6=Cc5c(c(\C=C)c4C=C9N3C(=Cc1n2[Fe]3(n45)N67)C8(OC(=O)CC8)C9(O)C)C)C)C"
HDD SMILES_CANONICAL CACTVS 3.341 "Cc1c(CCC(O)=O)c2C=C3N4C(=Cc5n6c(C=C7N8C(=Cc1n2[Fe@]468)C(=C7C=C)C)c(C)c5C=C)[C@](C)(O)[C@@]39CCC(=O)O9"
HDD SMILES CACTVS 3.341 "Cc1c(CCC(O)=O)c2C=C3N4C(=Cc5n6c(C=C7N8C(=Cc1n2[Fe]468)C(=C7C=C)C)c(C)c5C=C)[C](C)(O)[C]39CCC(=O)O9"
HDD SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c2n3c(c1CCC(=O)O)C=C4[C@]5(CCC(=O)O5)[C@@](C6=Cc7c(c(c8n7[Fe]3(N64)N9C(=C2)C(=C(C9=C8)C=C)C)C)C=C)(C)O"
HDD SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c2n3c(c1CCC(=O)O)C=C4C5(CCC(=O)O5)C(C6=Cc7c(c(c8n7[Fe]3(N64)N9C(=C2)C(=C(C9=C8)C=C)C)C)C=C)(C)O"
HDD InChI InChI 1.03 "InChI=1S/C34H32N4O5.Fe/c1-7-20-17(3)23-13-24-19(5)22(9-10-31(39)40)28(37-24)16-30-34(12-11-32(41)43-34)33(6,42)29(38-30)15-27-21(8-2)18(4)25(36-27)14-26(20)35-23;/h7-8,13-16,42H,1-2,9-12H2,3-6H3,(H,39,40);/q-4;+4/b23-13-,26-14-,29-15-,30-16-;/t33-,34+;/m0./s1"
HDD InChIKey InChI 1.03 UMGOPAWIGKFTRK-QQDQPIDJSA-N
#
_pdbx_chem_comp_identifier.comp_id HDD
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier "{3-[(2R,5'S)-9',14'-diethenyl-5'-hydroxy-5',10',15',19'-tetramethyl-5-oxo-4,5-dihydro-3H-spiro[furan-2,4'-[21,22,23,24]tetraazapentacyclo[16.2.1.1~3,6~.1~8,11~.1~13,16~]tetracosa[1(20),2,6,8,10,12,14,16,18]nonaen]-20'-yl-kappa~4~N~21'~,N~22'~,N~23'~,N~24'~]propanoato(4-)}iron"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HDD "Create component" 2000-08-22 RCSB
HDD "Modify descriptor" 2011-06-04 RCSB
HDD "Modify synonyms" 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HDD
_pdbx_chem_comp_synonyms.name HEME
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##