data_HE3 # _chem_comp.id HE3 _chem_comp.name "2-HYDROXYETHYL DIHYDROTHIACHROME DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C14 H22 N4 O8 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "2-{(9AS)-9A-[(1S)-1-HYDROXYETHYL]-2,7-DIMETHYL-9A,10-DIHYDRO-5H-PYRIMIDO[4,5-D][1,3]THIAZOLO[3,2-A]PYRIMIDIN-8-YL}ETHYL TRIHYDROGEN DIPHOSPHATE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2003-04-10 _chem_comp.pdbx_modified_date 2021-03-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 468.359 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HE3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1OZG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HE3 C9 C9 C 0 1 N N N 124.263 5.856 16.939 -4.530 2.410 -2.173 C9 HE3 1 HE3 C8 C8 C 0 1 N N S 124.146 5.543 18.428 -4.260 2.177 -0.685 C8 HE3 2 HE3 O9 O9 O 0 1 N N N 123.683 4.122 18.123 -3.860 3.406 -0.075 O9 HE3 3 HE3 C2 C2 C 0 1 N N S 123.354 6.566 19.321 -3.145 1.141 -0.525 C2 HE3 4 HE3 "N4'" "N4'" N 0 1 N N N 123.513 5.821 20.741 -3.469 -0.153 -1.141 "N4'" HE3 5 HE3 "C4'" "C4'" C 0 1 Y N N 122.135 5.534 21.370 -4.264 -1.044 -0.433 "C4'" HE3 6 HE3 "N3'" "N3'" N 0 1 Y N N 122.226 5.415 22.804 -4.857 -2.042 -1.087 "N3'" HE3 7 HE3 "C2'" "C2'" C 0 1 Y N N 121.066 5.155 23.568 -5.616 -2.908 -0.447 "C2'" HE3 8 HE3 CM2 CM2 C 0 1 N N N 121.254 5.053 24.977 -6.270 -4.022 -1.222 CM2 HE3 9 HE3 "N1'" "N1'" N 0 1 Y N N 119.802 5.022 22.833 -5.819 -2.827 0.853 "N1'" HE3 10 HE3 "C6'" "C6'" C 0 1 Y N N 119.685 5.142 21.343 -5.264 -1.861 1.571 "C6'" HE3 11 HE3 "C5'" "C5'" C 0 1 Y N N 120.888 5.410 20.538 -4.463 -0.929 0.939 "C5'" HE3 12 HE3 "C7'" "C7'" C 0 1 N N N 120.921 5.557 19.016 -3.838 0.181 1.747 "C7'" HE3 13 HE3 N3 N3 N 0 1 N N N 121.921 6.659 18.642 -2.817 0.835 0.899 N3 HE3 14 HE3 C4 C4 C 0 1 N N N 121.645 8.140 18.986 -1.538 1.175 1.280 C4 HE3 15 HE3 CM4 CM4 C 0 1 N N N 120.191 8.648 18.911 -1.148 1.005 2.726 CM4 HE3 16 HE3 C5 C5 C 0 1 N N N 122.855 8.919 19.353 -0.637 1.645 0.435 C5 HE3 17 HE3 C6 C6 C 0 1 N N N 122.763 10.304 19.686 0.791 2.035 0.719 C6 HE3 18 HE3 C7 C7 C 0 1 N N N 122.918 11.327 18.641 1.714 0.857 0.401 C7 HE3 19 HE3 O7 O7 O 0 1 N N N 122.816 12.707 18.955 3.068 1.226 0.671 O7 HE3 20 HE3 PA PA P 0 1 N N S 123.624 13.753 19.567 3.978 -0.053 0.316 PA HE3 21 HE3 O2A O2A O 0 1 N N N 122.798 14.921 19.524 3.623 -1.260 1.321 O2A HE3 22 HE3 O3A O3A O 0 1 N N N 124.023 13.132 20.858 3.713 -0.477 -1.077 O3A HE3 23 HE3 O1A O1A O 0 1 N N N 124.857 13.815 18.545 5.533 0.335 0.473 O1A HE3 24 HE3 PB PB P 0 1 N N N 125.005 14.362 17.092 6.371 -0.747 -0.376 PB HE3 25 HE3 O1B O1B O 0 1 N N N 126.059 15.323 17.249 6.329 -0.355 -1.936 O1B HE3 26 HE3 O2B O2B O 0 1 N N N 125.345 13.169 16.242 7.898 -0.762 0.133 O2B HE3 27 HE3 O3B O3B O 0 1 N N N 123.652 14.893 16.756 5.775 -2.089 -0.188 O3B HE3 28 HE3 S1 S1 S 0 1 N N N 124.340 8.035 19.337 -1.520 1.724 -1.146 S1 HE3 29 HE3 H91 1H9 H 0 1 N N N 123.383 5.696 16.273 -3.623 2.776 -2.654 H91 HE3 30 HE3 H92 2H9 H 0 1 N N N 124.601 6.895 17.162 -4.835 1.473 -2.638 H92 HE3 31 HE3 H93 3H9 H 0 1 N N N 124.889 5.202 16.288 -5.324 3.148 -2.287 H93 HE3 32 HE3 H8 H8 H 0 1 N N N 125.001 5.632 19.139 -5.168 1.811 -0.204 H8 HE3 33 HE3 HO9 HO9 H 0 1 N N N 123.610 3.927 19.050 -3.056 3.694 -0.529 HO9 HE3 34 HE3 "H4'" "H4'" H 0 1 N N N 124.115 6.345 21.376 -3.134 -0.380 -2.023 "H4'" HE3 35 HE3 HM21 1HM2 H 0 0 N N N 121.760 5.971 25.358 -5.607 -4.887 -1.244 HM21 HE3 36 HE3 HM22 2HM2 H 0 0 N N N 120.339 4.848 25.580 -7.209 -4.296 -0.742 HM22 HE3 37 HE3 HM23 3HM2 H 0 0 N N N 122.033 4.287 25.200 -6.466 -3.689 -2.242 HM23 HE3 38 HE3 "H6'" "H6'" H 0 1 N N N 118.711 5.033 20.837 -5.435 -1.803 2.635 "H6'" HE3 39 HE3 "H7'1" "1H7'" H 0 0 N N N 119.909 5.738 18.585 -4.601 0.905 2.033 "H7'1" HE3 40 HE3 "H7'2" "2H7'" H 0 0 N N N 121.140 4.593 18.501 -3.367 -0.232 2.639 "H7'2" HE3 41 HE3 HM41 1HM4 H 0 0 N N N 119.546 8.000 19.549 -0.740 0.005 2.877 HM41 HE3 42 HE3 HM42 2HM4 H 0 0 N N N 119.992 9.717 19.159 -0.395 1.748 2.989 HM42 HE3 43 HE3 HM43 3HM4 H 0 0 N N N 119.780 8.427 17.898 -2.026 1.138 3.357 HM43 HE3 44 HE3 H61 1H6 H 0 1 N N N 123.494 10.519 20.500 1.065 2.889 0.099 H61 HE3 45 HE3 H62 2H6 H 0 1 N N N 121.792 10.477 20.206 0.892 2.302 1.771 H62 HE3 46 HE3 H71 1H7 H 0 1 N N N 122.193 11.102 17.824 1.440 0.003 1.021 H71 HE3 47 HE3 H72 2H7 H 0 1 N N N 123.895 11.158 18.131 1.613 0.589 -0.650 H72 HE3 48 HE3 H2A H2A H 0 1 N N N 123.325 15.603 19.923 3.810 -0.943 2.216 H2A HE3 49 HE3 H1B H1B H 0 1 N N N 126.149 15.656 16.364 6.725 0.524 -2.014 H1B HE3 50 HE3 H2B H2B H 0 1 N N N 125.435 13.502 15.357 8.363 -1.422 -0.399 H2B HE3 51 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HE3 C9 C8 SING N N 1 HE3 C9 H91 SING N N 2 HE3 C9 H92 SING N N 3 HE3 C9 H93 SING N N 4 HE3 C8 O9 SING N N 5 HE3 C8 C2 SING N N 6 HE3 C8 H8 SING N N 7 HE3 O9 HO9 SING N N 8 HE3 C2 "N4'" SING N N 9 HE3 C2 N3 SING N N 10 HE3 C2 S1 SING N N 11 HE3 "N4'" "C4'" SING N N 12 HE3 "N4'" "H4'" SING N N 13 HE3 "C4'" "N3'" DOUB Y N 14 HE3 "C4'" "C5'" SING Y N 15 HE3 "N3'" "C2'" SING Y N 16 HE3 "C2'" CM2 SING N N 17 HE3 "C2'" "N1'" DOUB Y N 18 HE3 CM2 HM21 SING N N 19 HE3 CM2 HM22 SING N N 20 HE3 CM2 HM23 SING N N 21 HE3 "N1'" "C6'" SING Y N 22 HE3 "C6'" "C5'" DOUB Y N 23 HE3 "C6'" "H6'" SING N N 24 HE3 "C5'" "C7'" SING N N 25 HE3 "C7'" N3 SING N N 26 HE3 "C7'" "H7'1" SING N N 27 HE3 "C7'" "H7'2" SING N N 28 HE3 N3 C4 SING N N 29 HE3 C4 CM4 SING N N 30 HE3 C4 C5 DOUB N N 31 HE3 CM4 HM41 SING N N 32 HE3 CM4 HM42 SING N N 33 HE3 CM4 HM43 SING N N 34 HE3 C5 C6 SING N N 35 HE3 C5 S1 SING N N 36 HE3 C6 C7 SING N N 37 HE3 C6 H61 SING N N 38 HE3 C6 H62 SING N N 39 HE3 C7 O7 SING N N 40 HE3 C7 H71 SING N N 41 HE3 C7 H72 SING N N 42 HE3 O7 PA SING N N 43 HE3 PA O2A SING N N 44 HE3 PA O3A DOUB N N 45 HE3 PA O1A SING N N 46 HE3 O2A H2A SING N N 47 HE3 O1A PB SING N N 48 HE3 PB O1B SING N N 49 HE3 PB O2B SING N N 50 HE3 PB O3B DOUB N N 51 HE3 O1B H1B SING N N 52 HE3 O2B H2B SING N N 53 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HE3 SMILES ACDLabs 10.04 "O=P(O)(O)OP(=O)(O)OCCC=2SC3(Nc1nc(ncc1CN3C=2C)C)C(O)C" HE3 SMILES_CANONICAL CACTVS 3.341 "C[C@H](O)[C@]12Nc3nc(C)ncc3CN1C(=C(CCO[P@@](O)(=O)O[P](O)(O)=O)S2)C" HE3 SMILES CACTVS 3.341 "C[CH](O)[C]12Nc3nc(C)ncc3CN1C(=C(CCO[P](O)(=O)O[P](O)(O)=O)S2)C" HE3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1ncc2c(n1)N[C@]3([N@@](C2)C(=C(S3)CCO[P@](=O)(O)OP(=O)(O)O)C)[C@H](C)O" HE3 SMILES "OpenEye OEToolkits" 1.5.0 "Cc1ncc2c(n1)NC3(N(C2)C(=C(S3)CCOP(=O)(O)OP(=O)(O)O)C)C(C)O" HE3 InChI InChI 1.03 "InChI=1S/C14H22N4O8P2S/c1-8-12(4-5-25-28(23,24)26-27(20,21)22)29-14(9(2)19)17-13-11(7-18(8)14)6-15-10(3)16-13/h6,9,19H,4-5,7H2,1-3H3,(H,23,24)(H,15,16,17)(H2,20,21,22)/t9-,14-/m0/s1" HE3 InChIKey InChI 1.03 UQFVHIGKDHNMJT-XPTSAGLGSA-N # _pdbx_chem_comp_identifier.comp_id HE3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program ACDLabs _pdbx_chem_comp_identifier.program_version 10.04 _pdbx_chem_comp_identifier.identifier "2-{(9aS)-9a-[(1S)-1-hydroxyethyl]-2,7-dimethyl-9a,10-dihydro-5H-pyrimido[4,5-d][1,3]thiazolo[3,2-a]pyrimidin-8-yl}ethyl trihydrogen diphosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HE3 "Create component" 2003-04-10 RCSB HE3 "Modify descriptor" 2011-06-04 RCSB HE3 "Modify synonyms" 2021-03-13 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id HE3 _pdbx_chem_comp_synonyms.name "2-{(9AS)-9A-[(1S)-1-HYDROXYETHYL]-2,7-DIMETHYL-9A,10-DIHYDRO-5H-PYRIMIDO[4,5-D][1,3]THIAZOLO[3,2-A]PYRIMIDIN-8-YL}ETHYL TRIHYDROGEN DIPHOSPHATE" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? ##