data_HEJ
#
_chem_comp.id HEJ
_chem_comp.name "9-{5-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}-9H-purin-6-amine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H16 N5 O13 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Vidarabine-TRIPHOSPHATE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-06-27
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 507.181
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HEJ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6DWJ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HEJ N6 N1 N 0 1 N N N 22.280 1.488 137.136 -6.804 -3.827 1.327 N6 HEJ 1
HEJ C6 C1 C 0 1 Y N N 23.673 1.623 136.906 -6.511 -2.849 0.392 C6 HEJ 2
HEJ N1 N2 N 0 1 Y N N 24.506 0.768 137.503 -7.264 -2.699 -0.692 N1 HEJ 3
HEJ C2 C2 C 0 1 Y N N 25.832 0.890 137.294 -6.992 -1.768 -1.590 C2 HEJ 4
HEJ N3 N3 N 0 1 Y N N 26.338 1.851 136.439 -5.973 -0.945 -1.468 N3 HEJ 5
HEJ C4 C3 C 0 1 Y N N 25.518 2.706 135.780 -5.164 -1.020 -0.416 C4 HEJ 6
HEJ C5 C4 C 0 1 Y N N 24.125 2.612 135.983 -5.414 -1.989 0.571 C5 HEJ 7
HEJ N7 N4 N 0 1 Y N N 23.531 3.541 135.175 -4.455 -1.852 1.518 N7 HEJ 8
HEJ C8 C5 C 0 1 Y N N 24.502 4.174 134.540 -3.652 -0.884 1.184 C8 HEJ 9
HEJ N9 N5 N 0 1 Y N N 25.722 3.658 134.879 -4.055 -0.330 0.005 N9 HEJ 10
HEJ "C1'" C6 C 0 1 N N R 26.924 4.118 134.523 -3.408 0.781 -0.697 "C1'" HEJ 11
HEJ "O4'" O1 O 0 1 N N N 26.796 5.685 134.567 -2.019 0.879 -0.312 "O4'" HEJ 12
HEJ "C4'" C7 C 0 1 N N R 27.076 6.181 133.432 -1.628 2.230 -0.639 "C4'" HEJ 13
HEJ "C5'" C8 C 0 1 N N N 25.837 6.623 132.715 -0.382 2.630 0.154 "C5'" HEJ 14
HEJ "O5'" O2 O 0 1 N N N 25.001 7.415 133.562 0.730 1.842 -0.276 "O5'" HEJ 15
HEJ PA P1 P 0 1 N N N 25.540 9.005 133.903 2.207 1.996 0.346 PA HEJ 16
HEJ O2A O3 O 0 1 N N N 27.044 9.299 133.578 2.143 1.833 1.816 O2A HEJ 17
HEJ O1A O4 O 0 1 N N N 25.186 9.321 135.326 2.789 3.455 -0.007 O1A HEJ 18
HEJ O3A O5 O 0 1 N N N 24.795 10.097 132.890 3.172 0.868 -0.277 O3A HEJ 19
HEJ PB P2 P 0 1 N N N 23.297 9.948 132.330 4.573 0.218 0.179 PB HEJ 20
HEJ O1B O6 O 0 1 N N N 23.157 11.061 131.311 4.522 -0.100 1.623 O1B HEJ 21
HEJ O2B O7 O 0 1 N N N 22.254 9.902 133.433 5.765 1.263 -0.099 O2B HEJ 22
HEJ O3B O8 O 0 1 N N N 23.311 8.569 131.442 4.836 -1.132 -0.659 O3B HEJ 23
HEJ PG P3 P 0 1 N N N 22.431 8.433 130.046 5.772 -2.422 -0.435 PG HEJ 24
HEJ O3G O9 O 0 1 N N N 23.075 7.367 129.193 7.081 -1.994 0.106 O3G HEJ 25
HEJ O2G O10 O 0 1 N N N 21.072 7.868 130.395 5.063 -3.425 0.607 O2G HEJ 26
HEJ O1G O11 O 0 1 N N N 22.489 9.819 129.412 5.992 -3.176 -1.840 O1G HEJ 27
HEJ "C3'" C9 C 0 1 N N S 27.845 4.988 132.600 -2.834 3.101 -0.225 "C3'" HEJ 28
HEJ "O3'" O12 O 0 1 N N N 29.259 5.049 132.726 -3.025 4.167 -1.157 "O3'" HEJ 29
HEJ "C2'" C10 C 0 1 N N S 27.493 3.874 133.105 -4.032 2.126 -0.264 "C2'" HEJ 30
HEJ O31 O13 O 0 1 N N N 26.395 3.292 132.247 -4.625 2.010 1.031 O31 HEJ 31
HEJ H1 H1 H 0 1 N N N 22.117 0.719 137.754 -7.566 -4.412 1.195 H1 HEJ 32
HEJ H2 H2 H 0 1 N N N 21.927 2.328 137.549 -6.244 -3.929 2.113 H2 HEJ 33
HEJ H3 H3 H 0 1 N N N 26.512 0.224 137.804 -7.630 -1.681 -2.457 H3 HEJ 34
HEJ H4 H4 H 0 1 N N N 24.352 4.989 133.847 -2.802 -0.556 1.763 H4 HEJ 35
HEJ H5 H5 H 0 1 N N N 27.692 3.824 135.254 -3.495 0.650 -1.776 H5 HEJ 36
HEJ H6 H6 H 0 1 N N N 27.772 7.030 133.502 -1.442 2.323 -1.709 H6 HEJ 37
HEJ H7 H7 H 0 1 N N N 26.125 7.219 131.837 -0.167 3.685 -0.015 H7 HEJ 38
HEJ H8 H8 H 0 1 N N N 25.277 5.735 132.387 -0.558 2.461 1.217 H8 HEJ 39
HEJ H9 H9 H 0 1 N N N 25.954 9.648 135.779 2.859 3.631 -0.956 H9 HEJ 40
HEJ H10 H10 H 0 1 N N N 21.636 10.614 133.315 5.857 1.517 -1.028 H10 HEJ 41
HEJ H11 H11 H 0 1 N N N 20.974 7.010 129.999 4.199 -3.747 0.316 H11 HEJ 42
HEJ H12 H12 H 0 1 N N N 22.752 10.456 130.066 6.548 -3.965 -1.781 H12 HEJ 43
HEJ H13 H13 H 0 1 N N N 27.554 5.085 131.544 -2.695 3.496 0.782 H13 HEJ 44
HEJ H14 H14 H 0 1 N N N 29.575 5.867 132.361 -3.805 4.710 -0.979 H14 HEJ 45
HEJ H15 H15 H 0 1 N N N 28.320 3.152 133.175 -4.770 2.457 -0.994 H15 HEJ 46
HEJ H16 H16 H 0 1 N N N 26.118 2.458 132.609 -4.980 2.840 1.378 H16 HEJ 47
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HEJ O3G PG DOUB N N 1
HEJ O1G PG SING N N 2
HEJ PG O2G SING N N 3
HEJ PG O3B SING N N 4
HEJ O1B PB DOUB N N 5
HEJ O3B PB SING N N 6
HEJ O31 "C2'" SING N N 7
HEJ PB O3A SING N N 8
HEJ PB O2B SING N N 9
HEJ "C3'" "O3'" SING N N 10
HEJ "C3'" "C2'" SING N N 11
HEJ "C3'" "C4'" SING N N 12
HEJ "C5'" "C4'" SING N N 13
HEJ "C5'" "O5'" SING N N 14
HEJ O3A PA SING N N 15
HEJ "C2'" "C1'" SING N N 16
HEJ "C4'" "O4'" SING N N 17
HEJ "O5'" PA SING N N 18
HEJ O2A PA DOUB N N 19
HEJ PA O1A SING N N 20
HEJ "C1'" "O4'" SING N N 21
HEJ "C1'" N9 SING N N 22
HEJ C8 N9 SING Y N 23
HEJ C8 N7 DOUB Y N 24
HEJ N9 C4 SING Y N 25
HEJ N7 C5 SING Y N 26
HEJ C4 C5 DOUB Y N 27
HEJ C4 N3 SING Y N 28
HEJ C5 C6 SING Y N 29
HEJ N3 C2 DOUB Y N 30
HEJ C6 N6 SING N N 31
HEJ C6 N1 DOUB Y N 32
HEJ C2 N1 SING Y N 33
HEJ N6 H1 SING N N 34
HEJ N6 H2 SING N N 35
HEJ C2 H3 SING N N 36
HEJ C8 H4 SING N N 37
HEJ "C1'" H5 SING N N 38
HEJ "C4'" H6 SING N N 39
HEJ "C5'" H7 SING N N 40
HEJ "C5'" H8 SING N N 41
HEJ O1A H9 SING N N 42
HEJ O2B H10 SING N N 43
HEJ O2G H11 SING N N 44
HEJ O1G H12 SING N N 45
HEJ "C3'" H13 SING N N 46
HEJ "O3'" H14 SING N N 47
HEJ "C2'" H15 SING N N 48
HEJ O31 H16 SING N N 49
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HEJ SMILES ACDLabs 12.01 "Nc1ncnc2c1ncn2C3OC(COP(O)(=O)OP(O)(=O)OP(O)(=O)O)C(O)C3O"
HEJ InChI InChI 1.03 "InChI=1S/C10H16N5O13P3/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(26-10)1-25-30(21,22)28-31(23,24)27-29(18,19)20/h2-4,6-7,10,16-17H,1H2,(H,21,22)(H,23,24)(H2,11,12,13)(H2,18,19,20)/t4-,6-,7+,10-/m1/s1"
HEJ InChIKey InChI 1.03 ZKHQWZAMYRWXGA-UHTZMRCNSA-N
HEJ SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[C@@H](O)[C@@H]3O"
HEJ SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)[CH](O)[CH]3O"
HEJ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)[C@H]3[C@H]([C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N"
HEJ SMILES "OpenEye OEToolkits" 2.0.6 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)O)N"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HEJ "SYSTEMATIC NAME" ACDLabs 12.01 "9-{5-O-[(S)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}phosphoryl]-beta-D-arabinofuranosyl}-9H-purin-6-amine"
HEJ "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},4~{S},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HEJ "Create component" 2018-06-27 RCSB
HEJ "Modify synonyms" 2018-06-27 RCSB
HEJ "Initial release" 2018-10-24 RCSB
HEJ "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HEJ
_pdbx_chem_comp_synonyms.name Vidarabine-TRIPHOSPHATE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##