data_HF7
#
_chem_comp.id HF7
_chem_comp.name "2'-deoxy-2-methyladenosine 5'-(tetrahydrogen triphosphate)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H18 N5 O12 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Cladribine-TRIPHOSPHATE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2018-06-27
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 505.208
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HF7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6DW4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HF7 C2 C1 C 0 1 Y N N 56.572 -3.199 108.537 7.333 1.569 -1.204 C2 HF7 1
HF7 O2A O1 O 0 1 N N N 58.923 -6.129 102.137 -2.803 -2.691 0.403 O2A HF7 2
HF7 PA P1 P 0 1 N N N 57.893 -7.160 102.260 -2.157 -1.413 0.778 PA HF7 3
HF7 O1A O2 O 0 1 N N N 58.090 -8.159 103.329 -1.838 -1.417 2.356 O1A HF7 4
HF7 O3A O3 O 0 1 N N N 57.648 -8.094 101.030 -3.145 -0.190 0.433 O3A HF7 5
HF7 PB P2 P 0 1 N N N 58.349 -8.095 99.568 -4.717 0.076 0.659 PB HF7 6
HF7 O1B O4 O 0 1 N N N 57.356 -8.640 98.690 -5.471 -1.169 0.394 O1B HF7 7
HF7 O2B O5 O 0 1 N N N 58.817 -6.831 99.133 -4.969 0.543 2.179 O2B HF7 8
HF7 O3B O6 O 0 1 N N N 59.658 -8.992 99.796 -5.216 1.230 -0.346 O3B HF7 9
HF7 PG P3 P 0 1 N N N 59.900 -10.514 99.317 -6.663 1.737 -0.837 PG HF7 10
HF7 O3G O7 O 0 1 N N N 61.340 -10.515 99.149 -6.516 3.177 -1.543 O3G HF7 11
HF7 O2G O8 O 0 1 N N N 59.619 -11.429 100.463 -7.272 0.682 -1.890 O2G HF7 12
HF7 O1G O9 O 0 1 N N N 59.351 -10.916 98.002 -7.568 1.849 0.329 O1G HF7 13
HF7 "O5'" O10 O 0 1 N N N 56.467 -6.381 102.424 -0.785 -1.244 -0.047 "O5'" HF7 14
HF7 "C5'" C2 C 0 1 N N N 55.288 -7.113 102.767 0.256 -2.224 -0.037 "C5'" HF7 15
HF7 "C4'" C3 C 0 1 N N R 54.348 -6.149 103.491 1.411 -1.750 -0.921 "C4'" HF7 16
HF7 "C3'" C4 C 0 1 N N S 53.989 -4.972 102.623 2.550 -2.801 -0.939 "C3'" HF7 17
HF7 "O3'" O11 O 0 1 N N N 52.587 -4.634 102.890 2.316 -3.789 -1.945 "O3'" HF7 18
HF7 "C2'" C5 C 0 1 N N N 54.900 -3.853 103.030 3.784 -1.935 -1.292 "C2'" HF7 19
HF7 "C1'" C6 C 0 1 N N R 55.153 -4.098 104.520 3.362 -0.502 -0.911 "C1'" HF7 20
HF7 "O4'" O12 O 0 1 N N N 55.024 -5.592 104.660 2.040 -0.581 -0.352 "O4'" HF7 21
HF7 N9 N1 N 0 1 Y N N 56.461 -3.922 105.076 4.291 0.043 0.082 N9 HF7 22
HF7 C4 C7 C 0 1 Y N N 56.673 -3.649 106.388 5.486 0.664 -0.179 C4 HF7 23
HF7 C5 C8 C 0 1 Y N N 58.102 -3.570 106.544 6.021 1.015 1.071 C5 HF7 24
HF7 N7 N2 N 0 1 Y N N 58.663 -3.794 105.280 5.142 0.598 2.014 N7 HF7 25
HF7 C8 C9 C 0 1 Y N N 57.650 -4.026 104.437 4.126 0.027 1.435 C8 HF7 26
HF7 N3 N3 N 0 1 Y N N 55.900 -3.415 107.420 6.172 0.954 -1.280 N3 HF7 27
HF7 CL2 C10 C 0 1 N N N 55.806 -3.018 109.793 8.072 1.882 -2.480 CL2 HF7 28
HF7 N1 N4 N 0 1 Y N N 57.866 -3.138 108.741 7.872 1.927 -0.053 N1 HF7 29
HF7 C6 C11 C 0 1 Y N N 58.660 -3.372 107.784 7.261 1.676 1.100 C6 HF7 30
HF7 N6 N5 N 0 1 N N N 60.049 -3.276 108.043 7.839 2.046 2.302 N6 HF7 31
HF7 H1 H1 H 0 1 N N N 58.895 -7.969 103.796 -1.413 -0.608 2.673 H1 HF7 32
HF7 H2 H2 H 0 1 N N N 58.373 -6.588 98.329 -4.504 1.355 2.424 H2 HF7 33
HF7 H3 H3 H 0 1 N N N 61.555 -10.768 98.259 -7.351 3.544 -1.864 H3 HF7 34
HF7 H4 H4 H 0 1 N N N 59.105 -12.168 100.160 -6.730 0.558 -2.681 H4 HF7 35
HF7 H5 H5 H 0 1 N N N 54.805 -7.497 101.856 0.613 -2.364 0.984 H5 HF7 36
HF7 H6 H6 H 0 1 N N N 55.546 -7.954 103.427 -0.131 -3.168 -0.419 H6 HF7 37
HF7 H7 H7 H 0 1 N N N 53.435 -6.683 103.793 1.059 -1.543 -1.932 H7 HF7 38
HF7 H8 H8 H 0 1 N N N 54.137 -5.221 101.562 2.667 -3.265 0.040 H8 HF7 39
HF7 H9 H9 H 0 1 N N N 52.030 -5.357 102.624 3.044 -4.416 -2.056 H9 HF7 40
HF7 H10 H10 H 0 1 N N N 55.842 -3.891 102.463 4.649 -2.246 -0.706 H10 HF7 41
HF7 H11 H11 H 0 1 N N N 54.416 -2.878 102.872 4.002 -1.997 -2.358 H11 HF7 42
HF7 H12 H12 H 0 1 N N N 54.386 -3.588 105.122 3.352 0.130 -1.799 H12 HF7 43
HF7 H13 H13 H 0 1 N N N 57.765 -4.264 103.390 3.276 -0.396 1.951 H13 HF7 44
HF7 H14 H14 H 0 1 N N N 54.730 -3.098 109.581 8.732 1.051 -2.730 H14 HF7 45
HF7 H15 H15 H 0 1 N N N 56.096 -3.796 110.515 7.356 2.034 -3.287 H15 HF7 46
HF7 H16 H16 H 0 1 N N N 56.024 -2.026 110.216 8.664 2.788 -2.344 H16 HF7 47
HF7 H17 H17 H 0 1 N N N 60.193 -3.023 109.000 7.387 1.851 3.138 H17 HF7 48
HF7 H18 H18 H 0 1 N N N 60.483 -4.158 107.862 8.695 2.502 2.309 H18 HF7 49
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HF7 O1G PG DOUB N N 1
HF7 O1B PB DOUB N N 2
HF7 O2B PB SING N N 3
HF7 O3G PG SING N N 4
HF7 PG O3B SING N N 5
HF7 PG O2G SING N N 6
HF7 PB O3B SING N N 7
HF7 PB O3A SING N N 8
HF7 O3A PA SING N N 9
HF7 O2A PA DOUB N N 10
HF7 PA "O5'" SING N N 11
HF7 PA O1A SING N N 12
HF7 "O5'" "C5'" SING N N 13
HF7 "C3'" "O3'" SING N N 14
HF7 "C3'" "C2'" SING N N 15
HF7 "C3'" "C4'" SING N N 16
HF7 "C5'" "C4'" SING N N 17
HF7 "C2'" "C1'" SING N N 18
HF7 "C4'" "O4'" SING N N 19
HF7 C8 N9 SING Y N 20
HF7 C8 N7 DOUB Y N 21
HF7 "C1'" "O4'" SING N N 22
HF7 "C1'" N9 SING N N 23
HF7 N9 C4 SING Y N 24
HF7 N7 C5 SING Y N 25
HF7 C4 C5 DOUB Y N 26
HF7 C4 N3 SING Y N 27
HF7 C5 C6 SING Y N 28
HF7 N3 C2 DOUB Y N 29
HF7 C6 N6 SING N N 30
HF7 C6 N1 DOUB Y N 31
HF7 C2 N1 SING Y N 32
HF7 C2 CL2 SING N N 33
HF7 O1A H1 SING N N 34
HF7 O2B H2 SING N N 35
HF7 O3G H3 SING N N 36
HF7 O2G H4 SING N N 37
HF7 "C5'" H5 SING N N 38
HF7 "C5'" H6 SING N N 39
HF7 "C4'" H7 SING N N 40
HF7 "C3'" H8 SING N N 41
HF7 "O3'" H9 SING N N 42
HF7 "C2'" H10 SING N N 43
HF7 "C2'" H11 SING N N 44
HF7 "C1'" H12 SING N N 45
HF7 C8 H13 SING N N 46
HF7 CL2 H14 SING N N 47
HF7 CL2 H15 SING N N 48
HF7 CL2 H16 SING N N 49
HF7 N6 H17 SING N N 50
HF7 N6 H18 SING N N 51
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HF7 SMILES ACDLabs 12.01 "c3(nc(c2c(n(C1CC(C(COP(=O)(O)OP(OP(O)(O)=O)(=O)O)O1)O)cn2)n3)N)C"
HF7 InChI InChI 1.03 "InChI=1S/C11H18N5O12P3/c1-5-14-10(12)9-11(15-5)16(4-13-9)8-2-6(17)7(26-8)3-25-30(21,22)28-31(23,24)27-29(18,19)20/h4,6-8,17H,2-3H2,1H3,(H,21,22)(H,23,24)(H2,12,14,15)(H2,18,19,20)/t6-,7+,8+/m0/s1"
HF7 InChIKey InChI 1.03 QIXLXEXDORUMBZ-XLPZGREQSA-N
HF7 SMILES_CANONICAL CACTVS 3.385 "Cc1nc(N)c2ncn([C@H]3C[C@H](O)[C@@H](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3)c2n1"
HF7 SMILES CACTVS 3.385 "Cc1nc(N)c2ncn([CH]3C[CH](O)[CH](CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O3)c2n1"
HF7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "Cc1nc(c2c(n1)n(cn2)[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N"
HF7 SMILES "OpenEye OEToolkits" 2.0.6 "Cc1nc(c2c(n1)n(cn2)C3CC(C(O3)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O)N"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HF7 "SYSTEMATIC NAME" ACDLabs 12.01 "2'-deoxy-2-methyladenosine 5'-(tetrahydrogen triphosphate)"
HF7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "[[(2~{R},3~{S},5~{R})-5-(6-azanyl-2-methyl-purin-9-yl)-3-oxidanyl-oxolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HF7 "Create component" 2018-06-27 RCSB
HF7 "Modify synonyms" 2018-06-27 RCSB
HF7 "Initial release" 2018-10-10 RCSB
HF7 "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id HF7
_pdbx_chem_comp_synonyms.name Cladribine-TRIPHOSPHATE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##