data_HGR
#
_chem_comp.id HGR
_chem_comp.name "Hygromycin A"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H29 N O12"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-09-08
_chem_comp.pdbx_modified_date 2015-11-06
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 511.476
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HGR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5DM7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HGR C1 C1 C 0 1 N N N 56.506 119.904 113.557 1.070 1.224 0.641 C1 HGR 1
HGR C2 C2 C 0 1 N N N 55.112 119.614 113.509 2.337 1.880 0.283 C2 HGR 2
HGR C3 C3 C 0 1 N N N 54.207 120.521 112.932 3.421 1.036 -0.260 C3 HGR 3
HGR C4 C4 C 0 1 N N N 54.717 121.720 112.398 3.139 -0.182 -0.716 C4 HGR 4
HGR C5 C5 C 0 1 N N N 56.118 121.995 112.428 1.757 -0.753 -0.725 C5 HGR 5
HGR C6 C6 C 0 1 N N N 57.037 121.089 113.009 0.816 -0.016 0.176 C6 HGR 6
HGR O8 O1 O 0 1 N N N 63.877 121.434 117.492 -7.847 1.883 -0.005 O8 HGR 7
HGR C10 C7 C 0 1 N N S 51.898 120.675 112.007 5.693 0.626 -0.832 C10 HGR 8
HGR O11 O2 O 0 1 N N N 62.494 118.974 112.899 -4.857 -2.742 -0.029 O11 HGR 9
HGR C12 C8 C 0 1 N N N 58.564 121.323 113.087 -0.436 -0.664 0.560 C12 HGR 10
HGR C13 C9 C 0 1 N N N 51.400 122.553 115.933 8.867 -2.824 0.580 C13 HGR 11
HGR C15 C10 C 0 1 N N N 60.781 122.392 112.945 -2.867 -0.643 0.811 C15 HGR 12
HGR C16 C11 C 0 1 N N N 58.777 123.769 112.217 -1.649 1.236 -0.466 C16 HGR 13
HGR C17 C12 C 0 1 N N R 62.678 121.153 113.990 -5.290 -0.622 1.061 C17 HGR 14
HGR C19 C13 C 0 1 N N R 63.158 121.850 115.278 -6.351 0.466 1.201 C19 HGR 15
HGR C23 C14 C 0 1 N N N 64.816 120.398 117.163 -8.870 0.989 -0.467 C23 HGR 16
HGR O1 O3 O 0 1 N N N 51.664 122.067 112.194 5.864 -0.527 0.021 O1 HGR 17
HGR C7 C15 C 0 1 N N S 50.870 122.257 113.373 7.166 -1.057 -0.312 C7 HGR 18
HGR C8 C16 C 0 1 N N S 50.408 120.863 113.777 8.064 0.188 -0.488 C8 HGR 19
HGR C9 C17 C 0 1 N N S 50.600 120.086 112.489 7.073 1.320 -0.838 C9 HGR 20
HGR O2 O4 O 0 1 N N N 49.077 120.879 114.314 8.993 -0.013 -1.556 O2 HGR 21
HGR C11 C18 C 0 1 N N N 51.626 122.961 114.499 7.682 -1.922 0.809 C11 HGR 22
HGR O3 O5 O 0 1 N N N 52.869 120.197 112.925 4.699 1.500 -0.293 O3 HGR 23
HGR O4 O6 O 0 1 N N N 54.666 118.559 113.989 2.487 3.080 0.428 O4 HGR 24
HGR O5 O7 O 0 1 N N N 50.753 118.718 112.743 7.119 2.350 0.151 O5 HGR 25
HGR O6 O8 O 0 1 N N N 52.416 123.838 114.225 7.146 -1.892 1.891 O6 HGR 26
HGR C14 C19 C 0 1 N N N 59.368 122.462 112.771 -1.616 -0.052 0.315 C14 HGR 27
HGR O7 O9 O 0 1 N N N 61.562 123.231 112.414 -2.840 -1.683 1.441 O7 HGR 28
HGR C18 C20 C 0 1 N N S 62.823 121.123 116.573 -6.582 1.178 -0.133 C18 HGR 29
HGR C20 C21 C 0 1 N N S 62.944 119.631 114.051 -5.796 -1.670 0.063 C20 HGR 30
HGR C21 C22 C 0 1 N N R 62.264 118.964 115.246 -5.945 -0.997 -1.302 C21 HGR 31
HGR C22 C23 C 0 1 N N R 62.782 119.588 116.535 -6.907 0.164 -1.245 C22 HGR 32
HGR N1 N1 N 0 1 N N N 61.240 121.406 113.704 -4.043 -0.033 0.567 N1 HGR 33
HGR O10 O10 O 0 1 N N N 62.756 123.189 115.410 -5.920 1.420 2.174 O10 HGR 34
HGR O12 O11 O 0 1 N N N 62.543 117.588 115.245 -6.426 -1.956 -2.245 O12 HGR 35
HGR O9 O12 O 0 1 N N N 64.093 119.199 116.826 -8.251 -0.231 -0.921 O9 HGR 36
HGR H1 H1 H 0 1 N N N 57.174 119.197 114.026 0.354 1.727 1.273 H1 HGR 37
HGR H2 H2 H 0 1 N N N 54.041 122.440 111.961 3.947 -0.786 -1.103 H2 HGR 38
HGR H3 H3 H 0 1 N N N 56.431 122.126 111.382 1.370 -0.722 -1.743 H3 HGR 39
HGR H4 H4 H 0 1 N N N 56.236 122.946 112.968 1.805 -1.794 -0.402 H4 HGR 40
HGR H5 H5 H 0 1 N N N 52.112 120.405 110.962 5.419 0.315 -1.840 H5 HGR 41
HGR H6 H6 H 0 1 N N N 62.674 118.044 112.973 -5.116 -3.441 -0.645 H6 HGR 42
HGR H7 H7 H 0 1 N N N 59.124 120.472 113.445 -0.419 -1.632 1.039 H7 HGR 43
HGR H8 H8 H 0 1 N N N 52.038 123.160 116.592 9.785 -2.286 0.817 H8 HGR 44
HGR H9 H9 H 0 1 N N N 50.344 122.712 116.197 8.785 -3.702 1.221 H9 HGR 45
HGR H10 H10 H 0 1 N N N 51.652 121.489 116.056 8.889 -3.137 -0.464 H10 HGR 46
HGR H11 H11 H 0 1 N N N 57.684 123.674 112.139 -1.559 2.079 0.219 H11 HGR 47
HGR H12 H12 H 0 1 N N N 59.025 124.599 112.894 -0.821 1.252 -1.175 H12 HGR 48
HGR H13 H13 H 0 1 N N N 59.200 123.969 111.221 -2.592 1.308 -1.008 H13 HGR 49
HGR H14 H14 H 0 1 N N N 63.269 121.558 113.155 -5.118 -1.092 2.029 H14 HGR 50
HGR H15 H15 H 0 1 N N N 64.256 121.851 115.216 -7.286 0.014 1.533 H15 HGR 51
HGR H16 H16 H 0 1 N N N 65.469 120.204 118.027 -9.560 0.769 0.348 H16 HGR 52
HGR H17 H17 H 0 1 N N N 65.427 120.713 116.305 -9.414 1.450 -1.292 H17 HGR 53
HGR H18 H18 H 0 1 N N N 49.982 122.858 113.125 7.118 -1.625 -1.240 H18 HGR 54
HGR H19 H19 H 0 1 N N N 51.106 120.469 114.531 8.592 0.412 0.438 H19 HGR 55
HGR H20 H20 H 0 1 N N N 49.785 120.296 111.781 7.290 1.729 -1.825 H20 HGR 56
HGR H21 H21 H 0 1 N N N 49.065 121.389 115.116 9.582 0.738 -1.711 H21 HGR 57
HGR H22 H22 H 0 1 N N N 49.928 118.358 113.046 6.475 3.057 0.013 H22 HGR 58
HGR H23 H23 H 0 1 N N N 61.861 121.495 116.955 -5.759 1.843 -0.394 H23 HGR 59
HGR H24 H24 H 0 1 N N N 64.029 119.486 114.157 -6.762 -2.054 0.391 H24 HGR 60
HGR H25 H25 H 0 1 N N N 61.180 119.137 115.178 -4.970 -0.636 -1.628 H25 HGR 61
HGR H26 H26 H 0 1 N N N 62.120 119.258 117.350 -6.913 0.675 -2.208 H26 HGR 62
HGR H27 H27 H 0 1 N N N 60.570 120.787 114.114 -4.065 0.796 0.064 H27 HGR 63
HGR H28 H28 H 0 1 N N N 63.092 123.542 116.226 -6.544 2.144 2.319 H28 HGR 64
HGR H29 H29 H 0 1 N N N 62.118 117.178 115.989 -5.843 -2.720 -2.361 H29 HGR 65
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HGR C10 O1 SING N N 1
HGR C10 C9 SING N N 2
HGR C10 O3 SING N N 3
HGR O1 C7 SING N N 4
HGR C16 C14 SING N N 5
HGR C4 C5 SING N N 6
HGR C4 C3 DOUB N N 7
HGR O7 C15 DOUB N N 8
HGR C5 C6 SING N N 9
HGR C9 O5 SING N N 10
HGR C9 C8 SING N N 11
HGR C14 C15 SING N N 12
HGR C14 C12 DOUB N E 13
HGR O11 C20 SING N N 14
HGR O3 C3 SING N N 15
HGR C3 C2 SING N N 16
HGR C15 N1 SING N N 17
HGR C6 C12 SING N N 18
HGR C6 C1 DOUB N N 19
HGR C7 C8 SING N N 20
HGR C7 C11 SING N N 21
HGR C2 C1 SING N N 22
HGR C2 O4 DOUB N N 23
HGR N1 C17 SING N N 24
HGR C8 O2 SING N N 25
HGR C17 C20 SING N N 26
HGR C17 C19 SING N N 27
HGR C20 C21 SING N N 28
HGR O6 C11 DOUB N N 29
HGR C11 C13 SING N N 30
HGR O12 C21 SING N N 31
HGR C21 C22 SING N N 32
HGR C19 O10 SING N N 33
HGR C19 C18 SING N N 34
HGR C22 C18 SING N N 35
HGR C22 O9 SING N N 36
HGR C18 O8 SING N N 37
HGR O9 C23 SING N N 38
HGR C23 O8 SING N N 39
HGR C1 H1 SING N N 40
HGR C4 H2 SING N N 41
HGR C5 H3 SING N N 42
HGR C5 H4 SING N N 43
HGR C10 H5 SING N N 44
HGR O11 H6 SING N N 45
HGR C12 H7 SING N N 46
HGR C13 H8 SING N N 47
HGR C13 H9 SING N N 48
HGR C13 H10 SING N N 49
HGR C16 H11 SING N N 50
HGR C16 H12 SING N N 51
HGR C16 H13 SING N N 52
HGR C17 H14 SING N N 53
HGR C19 H15 SING N N 54
HGR C23 H16 SING N N 55
HGR C23 H17 SING N N 56
HGR C7 H18 SING N N 57
HGR C8 H19 SING N N 58
HGR C9 H20 SING N N 59
HGR O2 H21 SING N N 60
HGR O5 H22 SING N N 61
HGR C18 H23 SING N N 62
HGR C20 H24 SING N N 63
HGR C21 H25 SING N N 64
HGR C22 H26 SING N N 65
HGR N1 H27 SING N N 66
HGR O10 H28 SING N N 67
HGR O12 H29 SING N N 68
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HGR SMILES ACDLabs 12.01 "C=1C(=O)C(=CCC=1[C@H]=C(C(NC3C(O)C(C2C(OCO2)C3O)O)=O)C)OC4OC(C(O)C4O)C(C)=O"
HGR InChI InChI 1.03
"InChI=1S/C23H29NO12/c1-8(22(32)24-13-14(27)16(29)21-20(15(13)28)33-7-34-21)5-10-3-4-12(11(26)6-10)35-23-18(31)17(30)19(36-23)9(2)25/h4-6,13-21,23,27-31H,3,7H2,1-2H3,(H,24,32)/b8-5+/t13-,14+,15-,16-,17+,18+,19-,20+,21-,23-/m1/s1"
HGR InChIKey InChI 1.03 LDTRVHIISSLXOQ-IIHALWDASA-N
HGR SMILES_CANONICAL CACTVS 3.385 "CC(=O)[C@H]1O[C@@H](OC2=CCC(=CC2=O)/C=C(C)/C(=O)N[C@@H]3[C@H](O)[C@@H](O)[C@H]4OCO[C@H]4[C@@H]3O)[C@@H](O)[C@@H]1O"
HGR SMILES CACTVS 3.385 "CC(=O)[CH]1O[CH](OC2=CCC(=CC2=O)C=C(C)C(=O)N[CH]3[CH](O)[CH](O)[CH]4OCO[CH]4[CH]3O)[CH](O)[CH]1O"
HGR SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C/C(=C\C1=CC(=O)C(=CC1)O[C@H]2[C@H]([C@@H]([C@H](O2)C(=O)C)O)O)/C(=O)N[C@@H]3[C@@H]([C@H]([C@@H]4[C@H]([C@@H]3O)OCO4)O)O"
HGR SMILES "OpenEye OEToolkits" 1.9.2 "CC(=CC1=CC(=O)C(=CC1)OC2C(C(C(O2)C(=O)C)O)O)C(=O)NC3C(C(C4C(C3O)OCO4)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HGR "SYSTEMATIC NAME" ACDLabs 12.01 "(2E)-3-{4-[(6-deoxy-beta-D-arabino-hexofuranosyl-5-ulose)oxy]-3-oxocyclohexa-1,4-dien-1-yl}-2-methyl-N-[(3aS,4R,5R,6S,7R,7aR)-4,6,7-trihydroxyhexahydro-1,3-benzodioxol-5-yl]prop-2-enamide"
HGR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2
"(E)-N-[(3aS,4R,5R,6S,7R,7aR)-4,6,7-tris(oxidanyl)-3a,4,5,6,7,7a-hexahydro-1,3-benzodioxol-5-yl]-3-[4-[(2S,3S,4S,5S)-5-ethanoyl-3,4-bis(oxidanyl)oxolan-2-yl]oxy-3-oxidanylidene-cyclohexa-1,4-dien-1-yl]-2-methyl-prop-2-enamide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HGR "Create component" 2015-09-08 EBI
HGR "Initial release" 2015-11-11 RCSB
#