data_HIY # _chem_comp.id HIY _chem_comp.name "5'-S-[2-(phenylcarbamamido)ethyl]-5'-thioadenosine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H23 N7 O4 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-05-01 _chem_comp.pdbx_modified_date 2024-04-12 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 445.495 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HIY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8SHR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HIY N1 N1 N 0 1 Y N N N N N 27.353 1.041 -4.540 -7.988 2.104 0.417 N1 HIY 1 HIY C7 C1 C 0 1 N N N N N N 19.983 -2.434 -3.407 -0.433 -2.027 -0.470 C7 HIY 2 HIY C8 C2 C 0 1 N N N N N N 19.348 -4.904 -2.252 2.298 -1.252 -0.456 C8 HIY 3 HIY N2 N2 N 0 1 Y N N N N N 25.820 0.132 -2.920 -6.698 0.219 0.768 N2 HIY 4 HIY C9 C3 C 0 1 N N N N N N 19.849 -5.216 -0.851 3.461 -0.610 0.304 C9 HIY 5 HIY O1 O1 O 0 1 N N N N N N 18.492 -7.604 -0.397 5.860 0.373 1.046 O1 HIY 6 HIY C1 C4 C 0 1 Y N N N N N 27.030 0.445 -3.390 -7.846 0.859 0.833 C1 HIY 7 HIY C5 C5 C 0 1 N N R N N N 22.826 -0.502 -2.630 -3.724 -0.861 0.391 C5 HIY 8 HIY C6 C6 C 0 1 N N S N N N 21.112 -2.069 -2.458 -1.766 -2.093 0.278 C6 HIY 9 HIY N3 N3 N 0 1 Y N N N N N 23.813 1.339 -5.626 -4.491 2.500 -0.631 N3 HIY 10 HIY C4 C7 C 0 1 Y N N N N N 22.943 0.842 -4.781 -3.665 1.505 -0.483 C4 HIY 11 HIY C3 C8 C 0 1 Y N N N N N 25.033 1.134 -4.998 -5.717 2.139 -0.183 C3 HIY 12 HIY O3 O2 O 0 1 N N N N N N 22.218 0.964 -0.800 -5.224 -2.513 -0.632 O3 HIY 13 HIY C2 C9 C 0 1 Y N N N N N 24.857 0.497 -3.782 -5.618 0.814 0.273 C2 HIY 14 HIY N4 N4 N 0 1 Y N N N N N 23.505 0.291 -3.659 -4.313 0.441 0.071 N4 HIY 15 HIY C10 C10 C 0 1 N N N N N N 19.634 -7.629 -0.838 5.814 -0.103 -0.073 C10 HIY 16 HIY N6 N5 N 0 1 N N N N N N 20.202 -8.759 -1.278 6.917 -0.112 -0.847 N6 HIY 17 HIY C11 C11 C 0 1 Y N N N N N 19.627 -10.024 -1.257 8.089 0.511 -0.403 C11 HIY 18 HIY C16 C12 C 0 1 Y N N N N N 18.921 -10.622 -0.235 8.420 0.490 0.945 C16 HIY 19 HIY C15 C13 C 0 1 Y N N N N N 18.304 -11.846 -0.440 9.577 1.106 1.380 C15 HIY 20 HIY C14 C14 C 0 1 Y N N N N N 18.304 -12.422 -1.686 10.406 1.742 0.475 C14 HIY 21 HIY C13 C15 C 0 1 Y N N N N N 18.927 -11.779 -2.736 10.079 1.765 -0.869 C13 HIY 22 HIY C12 C16 C 0 1 Y N N N N N 19.595 -10.590 -2.530 8.926 1.146 -1.311 C12 HIY 23 HIY N5 N6 N 0 1 N N N N N N 20.409 -6.545 -0.963 4.660 -0.620 -0.538 N5 HIY 24 HIY S S1 S 0 1 N N N N N N 18.648 -3.257 -2.557 0.814 -1.239 0.586 S HIY 25 HIY O O3 O 0 1 N N N N N N 22.213 -1.610 -3.258 -2.285 -0.767 0.470 O HIY 26 HIY C17 C17 C 0 1 N N S N N N 20.820 -0.959 -1.439 -2.799 -2.872 -0.561 C17 HIY 27 HIY O2 O4 O 0 1 N N N N N N 21.102 -1.416 -0.114 -3.256 -4.023 0.152 O2 HIY 28 HIY C18 C18 C 0 1 N N R N N N 21.709 0.214 -1.896 -3.957 -1.866 -0.766 C18 HIY 29 HIY C C19 C 0 1 Y N N N N N 26.361 1.415 -5.384 -6.964 2.780 -0.093 C HIY 30 HIY N N7 N 0 1 N N N N N N 26.697 2.000 -6.536 -7.123 4.084 -0.527 N HIY 31 HIY H1 H1 H 0 1 N N N N N N 20.375 -3.103 -4.187 -0.108 -3.036 -0.725 H1 HIY 32 HIY H2 H2 H 0 1 N N N N N N 19.597 -1.515 -3.872 -0.557 -1.444 -1.383 H2 HIY 33 HIY H3 H3 H 0 1 N N N N N N 18.568 -5.641 -2.493 2.106 -0.688 -1.369 H3 HIY 34 HIY H4 H4 H 0 1 N N N N N N 20.197 -5.031 -2.939 2.555 -2.280 -0.711 H4 HIY 35 HIY H5 H5 H 0 1 N N N N N N 20.618 -4.493 -0.542 3.205 0.418 0.559 H5 HIY 36 HIY H6 H6 H 0 1 N N N N N N 19.020 -5.201 -0.128 3.653 -1.173 1.217 H6 HIY 37 HIY H7 H7 H 0 1 N N N N N N 27.861 0.180 -2.753 -8.705 0.346 1.242 H7 HIY 38 HIY H8 H8 H 0 1 N N N N N N 23.565 -0.849 -1.892 -4.135 -1.248 1.324 H8 HIY 39 HIY H9 H9 H 0 1 N N N N N N 21.409 -2.973 -1.907 -1.627 -2.583 1.241 H9 HIY 40 HIY H10 H10 H 0 1 N N N N N N 21.877 0.865 -4.954 -2.621 1.520 -0.758 H10 HIY 41 HIY H11 H11 H 0 1 N N N N N N 21.502 1.403 -0.356 -5.416 -3.151 -1.333 H11 HIY 42 HIY H12 H12 H 0 1 N N N N N N 21.125 -8.686 -1.656 6.899 -0.551 -1.712 H12 HIY 43 HIY H13 H13 H 0 1 N N N N N N 18.849 -10.136 0.727 7.773 -0.007 1.653 H13 HIY 44 HIY H14 H14 H 0 1 N N N N N N 17.821 -12.349 0.385 9.835 1.090 2.429 H14 HIY 45 HIY H15 H15 H 0 1 N N N N N N 17.819 -13.374 -1.844 11.310 2.224 0.817 H15 HIY 46 HIY H16 H16 H 0 1 N N N N N N 18.891 -12.210 -3.726 10.730 2.260 -1.574 H16 HIY 47 HIY H17 H17 H 0 1 N N N N N N 20.092 -10.099 -3.353 8.671 1.164 -2.360 H17 HIY 48 HIY H18 H18 H 0 1 N N N N N N 21.388 -6.655 -1.136 4.623 -0.999 -1.430 H18 HIY 49 HIY H19 H19 H 0 1 N N N N N N 19.765 -0.662 -1.526 -2.370 -3.164 -1.519 H19 HIY 50 HIY H20 H20 H 0 1 N N N N N N 20.918 -0.721 0.507 -3.908 -4.550 -0.329 H20 HIY 51 HIY H21 H21 H 0 1 N N N N N N 21.149 0.853 -2.594 -3.875 -1.370 -1.733 H21 HIY 52 HIY H22 H22 H 0 1 N N N N N N 27.693 2.073 -6.595 -6.368 4.567 -0.898 H22 HIY 53 HIY H23 H23 H 0 1 N N N N N N 26.357 1.451 -7.300 -7.989 4.516 -0.459 H23 HIY 54 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HIY N C SING N N 1 HIY N3 C3 SING Y N 2 HIY N3 C4 DOUB Y N 3 HIY C C3 DOUB Y N 4 HIY C N1 SING Y N 5 HIY C3 C2 SING Y N 6 HIY C4 N4 SING Y N 7 HIY N1 C1 DOUB Y N 8 HIY C2 N4 SING Y N 9 HIY C2 N2 DOUB Y N 10 HIY N4 C5 SING N N 11 HIY C7 S SING N N 12 HIY C7 C6 SING N N 13 HIY C1 N2 SING Y N 14 HIY O C5 SING N N 15 HIY O C6 SING N N 16 HIY C13 C12 DOUB Y N 17 HIY C13 C14 SING Y N 18 HIY C5 C18 SING N N 19 HIY S C8 SING N N 20 HIY C12 C11 SING Y N 21 HIY C6 C17 SING N N 22 HIY C8 C9 SING N N 23 HIY C18 C17 SING N N 24 HIY C18 O3 SING N N 25 HIY C14 C15 DOUB Y N 26 HIY C17 O2 SING N N 27 HIY N6 C11 SING N N 28 HIY N6 C10 SING N N 29 HIY C11 C16 DOUB Y N 30 HIY N5 C9 SING N N 31 HIY N5 C10 SING N N 32 HIY C10 O1 DOUB N N 33 HIY C15 C16 SING Y N 34 HIY C7 H1 SING N N 35 HIY C7 H2 SING N N 36 HIY C8 H3 SING N N 37 HIY C8 H4 SING N N 38 HIY C9 H5 SING N N 39 HIY C9 H6 SING N N 40 HIY C1 H7 SING N N 41 HIY C5 H8 SING N N 42 HIY C6 H9 SING N N 43 HIY C4 H10 SING N N 44 HIY O3 H11 SING N N 45 HIY N6 H12 SING N N 46 HIY C16 H13 SING N N 47 HIY C15 H14 SING N N 48 HIY C14 H15 SING N N 49 HIY C13 H16 SING N N 50 HIY C12 H17 SING N N 51 HIY N5 H18 SING N N 52 HIY C17 H19 SING N N 53 HIY O2 H20 SING N N 54 HIY C18 H21 SING N N 55 HIY N H22 SING N N 56 HIY N H23 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HIY SMILES ACDLabs 12.01 "Nc1ncnc2c1ncn2C1OC(CSCCNC(=O)Nc2ccccc2)C(O)C1O" HIY InChI InChI 1.06 "InChI=1S/C19H23N7O4S/c20-16-13-17(23-9-22-16)26(10-24-13)18-15(28)14(27)12(30-18)8-31-7-6-21-19(29)25-11-4-2-1-3-5-11/h1-5,9-10,12,14-15,18,27-28H,6-8H2,(H2,20,22,23)(H2,21,25,29)/t12-,14-,15-,18-/m1/s1" HIY InChIKey InChI 1.06 ZVEFVGBDFYZLDZ-SCFUHWHPSA-N HIY SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CSCCNC(=O)Nc4ccccc4)[C@@H](O)[C@H]3O" HIY SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CSCCNC(=O)Nc4ccccc4)[CH](O)[CH]3O" HIY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)NC(=O)NCCSC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3ncnc4N)O)O" HIY SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)NC(=O)NCCSCC2C(C(C(O2)n3cnc4c3ncnc4N)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HIY "SYSTEMATIC NAME" ACDLabs 12.01 "5'-S-[2-(phenylcarbamamido)ethyl]-5'-thioadenosine" HIY "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "1-[2-[[(2~{S},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]ethyl]-3-phenyl-urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HIY "Create component" 2023-05-01 RCSB HIY "Initial release" 2024-04-17 RCSB #