data_HJO # _chem_comp.id HJO _chem_comp.name "N-[(1R,2R,3R,4S,5S)-4-[(2R,3R,6S)-6-(aminomethyl)-3-azanyl-oxan-2-yl]oxy-5-azanyl-2-[(2R,3R,4R)-5-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C21 H41 N5 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-15 _chem_comp.pdbx_modified_date 2022-01-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 491.579 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HJO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DUH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HJO C2 C1 C 0 1 N N N 194.232 93.546 -14.449 1.431 4.801 1.127 C2 HJO 1 HJO C1 C2 C 0 1 N N N 194.411 92.361 -15.421 1.293 3.898 -0.072 C1 HJO 2 HJO O1 O1 O 0 1 N N N 195.151 92.447 -16.341 1.715 4.255 -1.152 O1 HJO 3 HJO C11 C3 C 0 1 N N R 189.855 87.169 -11.844 -4.383 0.200 -0.380 C11 HJO 4 HJO C12 C4 C 0 1 N N R 192.742 91.008 -14.063 0.567 1.816 -1.109 C12 HJO 5 HJO C13 C5 C 0 1 N N R 191.493 89.651 -16.749 2.001 -1.369 -0.012 C13 HJO 6 HJO C21 C6 C 0 1 N N R 188.574 87.648 -11.133 -5.564 0.334 0.584 C21 HJO 7 HJO C22 C7 C 0 1 N N N 193.399 90.176 -12.942 -0.696 2.190 -1.887 C22 HJO 8 HJO C23 C8 C 0 1 N N R 191.403 90.559 -17.978 3.116 -1.681 0.989 C23 HJO 9 HJO C31 C9 C 0 1 N N N 188.779 87.889 -9.692 -5.453 -0.742 1.668 C31 HJO 10 HJO C32 C10 C 0 1 N N S 192.389 89.857 -11.816 -1.919 2.027 -0.983 C32 HJO 11 HJO C33 C11 C 0 1 N N R 189.953 90.737 -18.237 4.357 -0.856 0.633 C33 HJO 12 HJO C41 C12 C 0 1 N N N 189.520 86.805 -9.034 -5.402 -2.120 1.001 C41 HJO 13 HJO C42 C13 C 0 1 N N S 191.102 89.194 -12.314 -2.019 0.574 -0.516 C42 HJO 14 HJO C43 C14 C 0 1 N N R 189.530 89.489 -18.853 4.767 -1.168 -0.809 C43 HJO 15 HJO C51 C15 C 0 1 N N S 190.660 86.236 -9.872 -4.227 -2.160 0.020 C51 HJO 16 HJO C52 C16 C 0 1 N N R 191.129 89.017 -13.850 -0.756 0.199 0.262 C52 HJO 17 HJO C53 C17 C 0 1 N N N 189.930 88.183 -18.127 3.589 -0.876 -1.741 C53 HJO 18 HJO C61 C18 C 0 1 N N N 191.225 85.016 -9.222 -4.204 -3.512 -0.695 C61 HJO 19 HJO C62 C19 C 0 1 N N R 191.367 90.420 -14.431 0.467 0.362 -0.643 C62 HJO 20 HJO C83 C20 C 0 1 N N N 188.275 89.509 -17.950 5.959 -0.294 -1.202 C83 HJO 21 HJO C93 C21 C 0 1 N N N 189.016 93.002 -18.354 5.374 -0.426 2.788 C93 HJO 22 HJO N12 N1 N 0 1 N N N 193.659 91.114 -15.201 0.701 2.694 0.056 N12 HJO 23 HJO N21 N2 N 0 1 N N N 188.002 88.875 -11.780 -5.539 1.664 1.209 N21 HJO 24 HJO N32 N3 N 0 1 N N N 193.018 88.962 -10.846 -1.785 2.908 0.186 N32 HJO 25 HJO N33 N4 N 0 1 N N N 189.671 91.946 -19.126 5.456 -1.204 1.545 N33 HJO 26 HJO N61 N5 N 0 1 N N N 192.637 85.229 -8.952 -3.061 -3.560 -1.616 N61 HJO 27 HJO O11 O2 O 0 1 N N N 190.975 87.973 -11.585 -3.162 0.422 0.328 O11 HJO 28 HJO O23 O3 O 0 1 N N N 191.993 91.802 -17.644 2.681 -1.344 2.308 O23 HJO 29 HJO O43 O4 O 0 1 N N N 188.603 89.506 -19.957 5.130 -2.547 -0.915 O43 HJO 30 HJO O51 O5 O 0 1 N N N 190.216 85.917 -11.253 -4.376 -1.114 -0.942 O51 HJO 31 HJO O52 O6 O 0 1 N N N 189.900 88.567 -14.332 -0.850 -1.158 0.697 O52 HJO 32 HJO O53 O7 O 0 1 N N N 190.609 88.478 -16.824 2.459 -1.652 -1.336 O53 HJO 33 HJO O62 O8 O 0 1 N N N 191.001 90.549 -15.816 1.647 0.012 0.084 O62 HJO 34 HJO H1 H1 H 0 1 N N N 194.870 94.383 -14.769 2.019 4.299 1.894 H1 HJO 35 HJO H2 H2 H 0 1 N N N 193.180 93.866 -14.451 1.931 5.724 0.831 H2 HJO 36 HJO H3 H3 H 0 1 N N N 194.518 93.234 -13.434 0.442 5.035 1.521 H3 HJO 37 HJO H4 H4 H 0 1 N N N 189.666 87.065 -12.923 -4.479 0.936 -1.178 H4 HJO 38 HJO H5 H5 H 0 1 N N N 192.570 92.018 -13.663 1.439 1.932 -1.753 H5 HJO 39 HJO H6 H6 H 0 1 N N N 192.536 89.360 -16.556 1.130 -1.984 0.211 H6 HJO 40 HJO H7 H7 H 0 1 N N N 187.830 86.844 -11.236 -6.498 0.205 0.037 H7 HJO 41 HJO H8 H8 H 0 1 N N N 193.772 89.233 -13.367 -0.624 3.226 -2.219 H8 HJO 42 HJO H9 H9 H 0 1 N N N 194.240 90.745 -12.519 -0.795 1.537 -2.754 H9 HJO 43 HJO H10 H10 H 0 1 N N N 191.900 90.086 -18.838 3.358 -2.743 0.946 H10 HJO 44 HJO H11 H11 H 0 1 N N N 189.343 88.825 -9.569 -4.544 -0.584 2.248 H11 HJO 45 HJO H12 H12 H 0 1 N N N 187.796 87.987 -9.209 -6.321 -0.688 2.326 H12 HJO 46 HJO H13 H13 H 0 1 N N N 192.122 90.801 -11.318 -2.819 2.294 -1.537 H13 HJO 47 HJO H14 H14 H 0 1 N N N 189.428 90.873 -17.280 4.128 0.205 0.726 H14 HJO 48 HJO H15 H15 H 0 1 N N N 188.815 85.991 -8.810 -5.267 -2.889 1.762 H15 HJO 49 HJO H16 H16 H 0 1 N N N 189.941 87.194 -8.095 -6.333 -2.299 0.463 H16 HJO 50 HJO H17 H17 H 0 1 N N N 190.260 89.857 -12.066 -2.119 -0.080 -1.383 H17 HJO 51 HJO H18 H18 H 0 1 N N N 191.452 86.997 -9.928 -3.293 -2.021 0.566 H18 HJO 52 HJO H19 H19 H 0 1 N N N 191.955 88.348 -14.134 -0.656 0.853 1.129 H19 HJO 53 HJO H20 H20 H 0 1 N N N 189.026 87.587 -17.934 3.339 0.184 -1.690 H20 HJO 54 HJO H21 H21 H 0 1 N N N 190.616 87.611 -18.769 3.861 -1.137 -2.764 H21 HJO 55 HJO H22 H22 H 0 1 N N N 190.695 84.823 -8.278 -4.112 -4.311 0.041 H22 HJO 56 HJO H23 H23 H 0 1 N N N 191.105 84.153 -9.893 -5.129 -3.641 -1.257 H23 HJO 57 HJO H24 H24 H 0 1 N N N 190.653 91.057 -13.888 0.368 -0.291 -1.509 H24 HJO 58 HJO H25 H25 H 0 1 N N N 188.582 89.503 -16.894 6.796 -0.498 -0.535 H25 HJO 59 HJO H26 H26 H 0 1 N N N 187.690 90.417 -18.156 6.251 -0.516 -2.229 H26 HJO 60 HJO H27 H27 H 0 1 N N N 187.660 88.621 -18.158 5.681 0.757 -1.124 H27 HJO 61 HJO H28 H28 H 0 1 N N N 188.819 93.866 -19.006 5.435 0.638 2.556 H28 HJO 62 HJO H29 H29 H 0 1 N N N 188.066 92.624 -17.949 4.428 -0.635 3.286 H29 HJO 63 HJO H30 H30 H 0 1 N N N 189.671 93.310 -17.526 6.199 -0.702 3.445 H30 HJO 64 HJO H31 H31 H 0 1 N N N 193.774 90.342 -15.826 0.364 2.409 0.920 H31 HJO 65 HJO H32 H32 H 0 1 N N N 187.175 89.155 -11.293 -6.310 1.777 1.850 H32 HJO 66 HJO H33 H33 H 0 1 N N N 188.675 89.614 -11.746 -4.658 1.830 1.670 H33 HJO 67 HJO H35 H35 H 0 1 N N N 192.369 88.752 -10.115 -1.717 3.875 -0.096 H35 HJO 68 HJO H36 H36 H 0 1 N N N 193.291 88.115 -11.302 -2.549 2.772 0.830 H36 HJO 69 HJO H38 H38 H 0 1 N N N 189.074 91.670 -19.879 6.351 -1.076 1.097 H38 HJO 70 HJO H40 H40 H 0 1 N N N 193.020 84.414 -8.517 -2.189 -3.470 -1.115 H40 HJO 71 HJO H41 H41 H 0 1 N N N 193.118 85.405 -9.811 -3.075 -4.405 -2.166 H41 HJO 72 HJO H43 H43 H 0 1 N N N 192.921 91.679 -17.480 1.895 -1.826 2.598 H43 HJO 73 HJO H44 H44 H 0 1 N N N 188.432 88.616 -20.241 5.401 -2.815 -1.804 H44 HJO 74 HJO H45 H45 H 0 1 N N N 189.724 87.699 -13.989 -1.548 -1.316 1.348 H45 HJO 75 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HJO O43 C43 SING N N 1 HJO N33 C93 SING N N 2 HJO N33 C33 SING N N 3 HJO C43 C33 SING N N 4 HJO C43 C53 SING N N 5 HJO C43 C83 SING N N 6 HJO C33 C23 SING N N 7 HJO C53 O53 SING N N 8 HJO C23 O23 SING N N 9 HJO C23 C13 SING N N 10 HJO O53 C13 SING N N 11 HJO C13 O62 SING N N 12 HJO O1 C1 DOUB N N 13 HJO O62 C62 SING N N 14 HJO C1 N12 SING N N 15 HJO C1 C2 SING N N 16 HJO N12 C12 SING N N 17 HJO C62 C12 SING N N 18 HJO C62 C52 SING N N 19 HJO O52 C52 SING N N 20 HJO C12 C22 SING N N 21 HJO C52 C42 SING N N 22 HJO C22 C32 SING N N 23 HJO C42 C32 SING N N 24 HJO C42 O11 SING N N 25 HJO C11 O11 SING N N 26 HJO C11 O51 SING N N 27 HJO C11 C21 SING N N 28 HJO C32 N32 SING N N 29 HJO N21 C21 SING N N 30 HJO O51 C51 SING N N 31 HJO C21 C31 SING N N 32 HJO C51 C61 SING N N 33 HJO C51 C41 SING N N 34 HJO C31 C41 SING N N 35 HJO C61 N61 SING N N 36 HJO C2 H1 SING N N 37 HJO C2 H2 SING N N 38 HJO C2 H3 SING N N 39 HJO C11 H4 SING N N 40 HJO C12 H5 SING N N 41 HJO C13 H6 SING N N 42 HJO C21 H7 SING N N 43 HJO C22 H8 SING N N 44 HJO C22 H9 SING N N 45 HJO C23 H10 SING N N 46 HJO C31 H11 SING N N 47 HJO C31 H12 SING N N 48 HJO C32 H13 SING N N 49 HJO C33 H14 SING N N 50 HJO C41 H15 SING N N 51 HJO C41 H16 SING N N 52 HJO C42 H17 SING N N 53 HJO C51 H18 SING N N 54 HJO C52 H19 SING N N 55 HJO C53 H20 SING N N 56 HJO C53 H21 SING N N 57 HJO C61 H22 SING N N 58 HJO C61 H23 SING N N 59 HJO C62 H24 SING N N 60 HJO C83 H25 SING N N 61 HJO C83 H26 SING N N 62 HJO C83 H27 SING N N 63 HJO C93 H28 SING N N 64 HJO C93 H29 SING N N 65 HJO C93 H30 SING N N 66 HJO N12 H31 SING N N 67 HJO N21 H32 SING N N 68 HJO N21 H33 SING N N 69 HJO N32 H35 SING N N 70 HJO N32 H36 SING N N 71 HJO N33 H38 SING N N 72 HJO N61 H40 SING N N 73 HJO N61 H41 SING N N 74 HJO O23 H43 SING N N 75 HJO O43 H44 SING N N 76 HJO O52 H45 SING N N 77 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HJO InChI InChI 1.03 "InChI=1S/C21H41N5O8/c1-9(27)26-13-6-12(24)16(33-19-11(23)5-4-10(7-22)32-19)14(28)17(13)34-20-15(29)18(25-3)21(2,30)8-31-20/h10-20,25,28-30H,4-8,22-24H2,1-3H3,(H,26,27)/t10-,11+,12-,13+,14+,15+,16-,17+,18+,19+,20+,21-/m0/s1" HJO InChIKey InChI 1.03 NVWHEJSLTXSZGG-RKWCMCGNSA-N HJO SMILES_CANONICAL CACTVS 3.385 "CN[C@@H]1[C@@H](O)[C@H](OC[C@]1(C)O)O[C@H]2[C@H](O)[C@@H](O[C@H]3O[C@H](CN)CC[C@H]3N)[C@@H](N)C[C@H]2NC(C)=O" HJO SMILES CACTVS 3.385 "CN[CH]1[CH](O)[CH](OC[C]1(C)O)O[CH]2[CH](O)[CH](O[CH]3O[CH](CN)CC[CH]3N)[CH](N)C[CH]2NC(C)=O" HJO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(=O)N[C@@H]1C[C@@H]([C@@H]([C@H]([C@@H]1O[C@@H]2[C@@H]([C@H](C(CO2)(C)O)NC)O)O)O[C@@H]3[C@@H](CC[C@H](O3)CN)N)N" HJO SMILES "OpenEye OEToolkits" 2.0.7 "CC(=O)NC1CC(C(C(C1OC2C(C(C(CO2)(C)O)NC)O)O)OC3C(CCC(O3)CN)N)N" # _pdbx_chem_comp_identifier.comp_id HJO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{R},2~{R},3~{R},4~{S},5~{S})-4-[(2~{R},3~{R},6~{S})-6-(aminomethyl)-3-azanyl-oxan-2-yl]oxy-5-azanyl-2-[(2~{R},3~{R},4~{R})-5-methyl-4-(methylamino)-3,5-bis(oxidanyl)oxan-2-yl]oxy-3-oxidanyl-cyclohexyl]ethanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HJO "Create component" 2021-01-15 PDBJ HJO "Modify formula" 2021-02-05 PDBJ HJO "Modify name" 2021-02-05 PDBJ HJO "Modify atom id" 2021-02-05 PDBJ HJO "Initial release" 2022-01-26 RCSB ##