data_HKI # _chem_comp.id HKI _chem_comp.name "N-(4-{[3-chloro-4-(pyridin-2-ylmethoxy)phenyl]amino}-3-cyano-7-ethoxyquinolin-6-yl)-4-(dimethylamino)butanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H31 Cl N6 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Neratinib (HKI-272), bound form" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2012-12-14 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 559.059 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HKI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3W2Q _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HKI CAJ CAJ C 0 1 N N N N N N 1.654 24.013 52.956 -1.716 -4.729 -1.783 CAJ HKI 1 HKI CAL CAL C 0 1 Y N N N N N 1.438 32.804 50.984 7.262 -0.657 2.365 CAL HKI 2 HKI CAK CAK C 0 1 Y N N N N N 0.712 33.151 49.868 8.439 -0.389 1.684 CAK HKI 3 HKI CAO CAO C 0 1 Y N N N N N -0.692 25.377 50.586 1.206 -1.496 -2.213 CAO HKI 4 HKI CAP CAP C 0 1 Y N N N N N -0.322 26.674 50.279 2.443 -1.303 -1.630 CAP HKI 5 HKI CAN CAN C 0 1 Y N N N N N 1.518 31.470 51.317 6.098 -0.831 1.630 CAN HKI 6 HKI CAS CAS C 0 1 Y N N N N N -0.243 20.239 50.608 -2.813 -0.080 -0.644 CAS HKI 7 HKI CAT CAT C 0 1 Y N N N N N 1.486 18.601 51.967 -4.954 -1.036 0.889 CAT HKI 8 HKI CAR CAR C 0 1 Y N N N N N 1.586 24.734 50.460 0.236 -1.843 -0.040 CAR HKI 9 HKI CAM CAM C 0 1 Y N N N N N 0.101 32.158 49.137 8.414 -0.303 0.304 CAM HKI 10 HKI CAQ CAQ C 0 1 Y N N N N N 2.414 21.749 53.291 -3.610 -4.142 -0.326 CAQ HKI 11 HKI CBL CBL C 0 1 Y N N N N N 1.591 22.631 52.634 -2.519 -3.748 -1.116 CBL HKI 12 HKI CBR CBR C 0 1 Y N N N N N 0.661 20.790 51.497 -3.049 -1.460 -0.563 CBR HKI 13 HKI CBQ CBQ C 0 1 Y N N N N N 1.536 19.963 52.199 -4.130 -1.948 0.211 CBQ HKI 14 HKI CBI CBI C 0 1 Y N N N N N 0.256 24.378 50.677 0.098 -1.763 -1.419 CBI HKI 15 HKI CBM CBM C 0 1 Y N N N N N -0.289 18.874 50.388 -3.625 0.789 0.029 CBM HKI 16 HKI CBP CBP C 0 1 Y N N N N N 0.679 22.164 51.710 -2.221 -2.382 -1.244 CBP HKI 17 HKI CBN CBN C 0 1 Y N N N N N 1.009 26.999 50.081 2.580 -1.377 -0.252 CBN HKI 18 HKI CBO CBO C 0 1 Y N N N N N 0.589 18.055 51.071 -4.695 0.313 0.803 CBO HKI 19 HKI CBJ CBJ C 0 1 Y N N N N N 1.985 26.032 50.174 1.473 -1.645 0.543 CBJ HKI 20 HKI CBK CBK C 0 1 Y N N N N N 0.874 30.542 50.526 6.150 -0.725 0.253 CBK HKI 21 HKI CBH CBH C 0 1 N N N N N N -2.591 18.634 49.703 -2.148 2.622 -0.323 CBH HKI 22 HKI CAA CAA C 0 1 N N N N N N 1.402 14.519 51.149 -7.342 1.782 2.901 CAA HKI 23 HKI CAB CAB C 0 1 N N N N N N -7.831 18.607 48.749 1.478 7.484 -1.594 CAB HKI 24 HKI CAC CAC C 0 1 N N N N N N -7.717 17.604 46.668 2.085 5.704 -0.069 CAC HKI 25 HKI CAV CAV C 0 1 N N N N N N 0.962 29.094 50.896 4.892 -0.911 -0.556 CAV HKI 26 HKI CAX CAX C 0 1 N N N N N N -3.554 17.670 49.067 -1.904 4.102 -0.470 CAX HKI 27 HKI CBT CBT C 0 1 N N N N N N -5.011 18.123 49.196 -0.424 4.347 -0.772 CBT HKI 28 HKI CAY CAY C 0 1 N N N N N N -5.726 17.713 47.913 -0.177 5.850 -0.922 CAY HKI 29 HKI CAU CAU C 0 1 N N N N N N 1.690 16.001 51.281 -6.563 0.647 2.234 CAU HKI 30 HKI NAD NAD N 0 1 N N N N N N 1.622 25.129 53.300 -1.080 -5.507 -2.312 NAD HKI 31 HKI NBA NBA N 0 1 Y N N N N N 2.416 20.432 53.093 -4.360 -3.267 0.294 NBA HKI 32 HKI NAZ NAZ N 0 1 Y N N N N N 0.164 30.856 49.437 7.289 -0.474 -0.362 NAZ HKI 33 HKI NBC NBC N 0 1 N N N N N N -0.176 23.061 51.022 -1.156 -1.953 -2.010 NBC HKI 34 HKI NBB NBB N 0 1 N N N N N N -1.237 18.341 49.477 -3.388 2.167 -0.053 NBB HKI 35 HKI NBU NBU N 0 1 N N N N N N -6.959 18.439 47.595 1.244 6.085 -1.212 NBU HKI 36 HKI OAG OAG O 0 1 N N N N N N -3.018 19.579 50.358 -1.229 1.840 -0.447 OAG HKI 37 HKI OBE OBE O 0 1 N N N N N N 1.397 28.299 49.780 3.797 -1.183 0.322 OBE HKI 38 HKI OBD OBD O 0 1 N N N N N N 0.523 16.689 50.833 -5.491 1.193 1.464 OBD HKI 39 HKI CLA CLA CL 0 0 N N N N N N 3.657 26.498 49.921 1.645 -1.737 2.268 CLA HKI 40 HKI H1 H1 H 0 1 N N N N N N 1.931 33.556 51.582 7.252 -0.734 3.442 H1 HKI 41 HKI H2 H2 H 0 1 N N N N N N 0.623 34.185 49.571 9.363 -0.248 2.224 H2 HKI 42 HKI H3 H3 H 0 1 N N N N N N -1.733 25.144 50.756 1.100 -1.434 -3.286 H3 HKI 43 HKI H4 H4 H 0 1 N N N N N N -1.078 27.440 50.193 3.304 -1.094 -2.247 H4 HKI 44 HKI H5 H5 H 0 1 N N N N N N 2.077 31.155 52.186 5.164 -1.045 2.127 H5 HKI 45 HKI H6 H6 H 0 1 N N N N N N -0.925 20.885 50.076 -1.989 0.295 -1.233 H6 HKI 46 HKI H7 H7 H 0 1 N N N N N N 2.164 17.950 52.499 -5.782 -1.392 1.483 H7 HKI 47 HKI H8 H8 H 0 1 N N N N N N 2.341 23.964 50.517 -0.625 -2.050 0.578 H8 HKI 48 HKI H9 H9 H 0 1 N N N N N N -0.466 32.449 48.265 9.328 -0.098 -0.234 H9 HKI 49 HKI H10 H10 H 0 1 N N N N N N 3.106 22.150 54.017 -3.838 -5.194 -0.229 H10 HKI 50 HKI H11 H11 H 0 1 N N N N N N 2.277 13.944 51.484 -8.160 1.365 3.489 H11 HKI 51 HKI H12 H12 H 0 1 N N N N N N 0.532 14.258 51.770 -6.676 2.345 3.555 H12 HKI 52 HKI H13 H13 H 0 1 N N N N N N 1.187 14.280 50.097 -7.746 2.444 2.135 H13 HKI 53 HKI H14 H14 H 0 1 N N N N N N -7.328 19.231 49.502 2.538 7.631 -1.804 H14 HKI 54 HKI H15 H15 H 0 1 N N N N N N -8.766 19.094 48.434 0.896 7.719 -2.486 H15 HKI 55 HKI H16 H16 H 0 1 N N N N N N -8.059 17.622 49.183 1.175 8.140 -0.779 H16 HKI 56 HKI H17 H17 H 0 1 N N N N N N -8.656 18.111 46.400 1.943 4.646 0.150 H17 HKI 57 HKI H18 H18 H 0 1 N N N N N N -7.121 17.431 45.759 3.132 5.889 -0.310 H18 HKI 58 HKI H19 H19 H 0 1 N N N N N N -7.945 16.640 47.146 1.803 6.296 0.803 H19 HKI 59 HKI H20 H20 H 0 1 N N N N N N -0.030 28.745 51.220 4.687 -0.003 -1.122 H20 HKI 60 HKI H21 H21 H 0 1 N N N N N N 1.680 28.977 51.721 5.022 -1.747 -1.243 H21 HKI 61 HKI H22 H22 H 0 1 N N N N N N -3.445 16.690 49.554 -2.511 4.490 -1.288 H22 HKI 62 HKI H23 H23 H 0 1 N N N N N N -3.307 17.578 47.999 -2.175 4.609 0.456 H23 HKI 63 HKI H24 H24 H 0 1 N N N N N N -5.057 19.215 49.320 0.183 3.958 0.045 H24 HKI 64 HKI H25 H25 H 0 1 N N N N N N -5.482 17.635 50.062 -0.154 3.840 -1.699 H25 HKI 65 HKI H26 H26 H 0 1 N N N N N N -5.978 16.645 47.996 -0.784 6.238 -1.739 H26 HKI 66 HKI H27 H27 H 0 1 N N N N N N -5.026 17.860 47.078 -0.447 6.356 0.005 H27 HKI 67 HKI H28 H28 H 0 1 N N N N N N 2.554 16.276 50.658 -6.160 -0.016 3.000 H28 HKI 68 HKI H29 H29 H 0 1 N N N N N N 1.899 16.254 52.331 -7.229 0.083 1.581 H29 HKI 69 HKI H30 H30 H 0 1 N N N N N N -1.099 22.766 50.774 -1.277 -1.783 -2.957 H30 HKI 70 HKI H31 H31 H 0 1 N N N N N N -0.951 17.777 48.702 -4.115 2.794 0.084 H31 HKI 71 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HKI CAC NBU SING N N 1 HKI NBU CAY SING N N 2 HKI NBU CAB SING N N 3 HKI CAY CBT SING N N 4 HKI CAX CBT SING N N 5 HKI CAX CBH SING N N 6 HKI CAM NAZ DOUB Y N 7 HKI CAM CAK SING Y N 8 HKI NAZ CBK SING Y N 9 HKI NBB CBH SING N N 10 HKI NBB CBM SING N N 11 HKI CBH OAG DOUB N N 12 HKI OBE CBN SING N N 13 HKI OBE CAV SING N N 14 HKI CAK CAL DOUB Y N 15 HKI CLA CBJ SING N N 16 HKI CBN CBJ DOUB Y N 17 HKI CBN CAP SING Y N 18 HKI CBJ CAR SING Y N 19 HKI CAP CAO DOUB Y N 20 HKI CBM CAS DOUB Y N 21 HKI CBM CBO SING Y N 22 HKI CAR CBI DOUB Y N 23 HKI CBK CAV SING N N 24 HKI CBK CAN DOUB Y N 25 HKI CAO CBI SING Y N 26 HKI CAS CBR SING Y N 27 HKI CBI NBC SING N N 28 HKI OBD CBO SING N N 29 HKI OBD CAU SING N N 30 HKI CAL CAN SING Y N 31 HKI NBC CBP SING N N 32 HKI CBO CAT DOUB Y N 33 HKI CAA CAU SING N N 34 HKI CBR CBP DOUB Y N 35 HKI CBR CBQ SING Y N 36 HKI CBP CBL SING Y N 37 HKI CAT CBQ SING Y N 38 HKI CBQ NBA DOUB Y N 39 HKI CBL CAJ SING N N 40 HKI CBL CAQ DOUB Y N 41 HKI CAJ NAD TRIP N N 42 HKI NBA CAQ SING Y N 43 HKI CAL H1 SING N N 44 HKI CAK H2 SING N N 45 HKI CAO H3 SING N N 46 HKI CAP H4 SING N N 47 HKI CAN H5 SING N N 48 HKI CAS H6 SING N N 49 HKI CAT H7 SING N N 50 HKI CAR H8 SING N N 51 HKI CAM H9 SING N N 52 HKI CAQ H10 SING N N 53 HKI CAA H11 SING N N 54 HKI CAA H12 SING N N 55 HKI CAA H13 SING N N 56 HKI CAB H14 SING N N 57 HKI CAB H15 SING N N 58 HKI CAB H16 SING N N 59 HKI CAC H17 SING N N 60 HKI CAC H18 SING N N 61 HKI CAC H19 SING N N 62 HKI CAV H20 SING N N 63 HKI CAV H21 SING N N 64 HKI CAX H22 SING N N 65 HKI CAX H23 SING N N 66 HKI CBT H24 SING N N 67 HKI CBT H25 SING N N 68 HKI CAY H26 SING N N 69 HKI CAY H27 SING N N 70 HKI CAU H28 SING N N 71 HKI CAU H29 SING N N 72 HKI NBC H30 SING N N 73 HKI NBB H31 SING N N 74 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HKI SMILES ACDLabs 12.01 "O=C(Nc4cc1c(ncc(C#N)c1Nc3ccc(OCc2ncccc2)c(Cl)c3)cc4OCC)CCCN(C)C" HKI InChI InChI 1.03 "InChI=1S/C30H31ClN6O3/c1-4-39-28-16-25-23(15-26(28)36-29(38)9-7-13-37(2)3)30(20(17-32)18-34-25)35-21-10-11-27(24(31)14-21)40-19-22-8-5-6-12-33-22/h5-6,8,10-12,14-16,18H,4,7,9,13,19H2,1-3H3,(H,34,35)(H,36,38)" HKI InChIKey InChI 1.03 MIURWHKJMYMLCP-UHFFFAOYSA-N HKI SMILES_CANONICAL CACTVS 3.370 "CCOc1cc2ncc(C#N)c(Nc3ccc(OCc4ccccn4)c(Cl)c3)c2cc1NC(=O)CCCN(C)C" HKI SMILES CACTVS 3.370 "CCOc1cc2ncc(C#N)c(Nc3ccc(OCc4ccccn4)c(Cl)c3)c2cc1NC(=O)CCCN(C)C" HKI SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCOc1cc2c(cc1NC(=O)CCCN(C)C)c(c(cn2)C#N)Nc3ccc(c(c3)Cl)OCc4ccccn4" HKI SMILES "OpenEye OEToolkits" 1.7.6 "CCOc1cc2c(cc1NC(=O)CCCN(C)C)c(c(cn2)C#N)Nc3ccc(c(c3)Cl)OCc4ccccn4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HKI "SYSTEMATIC NAME" ACDLabs 12.01 "N-(4-{[3-chloro-4-(pyridin-2-ylmethoxy)phenyl]amino}-3-cyano-7-ethoxyquinolin-6-yl)-4-(dimethylamino)butanamide" HKI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "N-[4-[[3-chloranyl-4-(pyridin-2-ylmethoxy)phenyl]amino]-3-cyano-7-ethoxy-quinolin-6-yl]-4-(dimethylamino)butanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HKI "Create component" 2012-12-14 PDBJ HKI "Initial release" 2013-01-11 RCSB HKI "Modify synonyms" 2021-03-13 RCSB HKI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id HKI _pdbx_chem_comp_synonyms.name "Neratinib (HKI-272), bound form" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id HKI _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CBT _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #