data_HKO # _chem_comp.id HKO _chem_comp.name "N-[(1R,2R,3R,4S,5R)-4-[(2R,3R,6S)-6-(aminomethyl)-3-azanyl-oxan-2-yl]oxy-5-azanyl-2-[[(3S,4S,5S,6R)-5-(methylamino)-4,6-bis(oxidanyl)-2-oxabicyclo[4.1.0]heptan-3-yl]oxy]-3-oxidanyl-cyclohexyl]pyridine-3-sulfonamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H40 N6 O9 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-15 _chem_comp.pdbx_modified_date 2022-01-07 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 588.674 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HKO _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DUI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HKO C2 C1 C 0 1 Y N N 196.692 92.809 -13.859 3.845 3.380 1.303 C2 HKO 1 HKO C3 C2 C 0 1 Y N N 198.008 93.016 -14.250 5.044 3.282 1.993 C3 HKO 2 HKO C4 C3 C 0 1 Y N N 198.291 93.309 -15.575 6.161 2.798 1.337 C4 HKO 3 HKO C5 C4 C 0 1 Y N N 196.051 93.207 -16.138 4.971 2.507 -0.613 C5 HKO 4 HKO C1 C5 C 0 1 Y N N 195.704 92.909 -14.831 3.813 2.981 -0.024 C1 HKO 5 HKO O1 O1 O 0 1 N N N 193.004 93.666 -15.281 2.693 3.144 -2.317 O1 HKO 6 HKO C11 C6 C 0 1 N N R 189.575 87.181 -11.354 1.612 -3.990 0.223 C11 HKO 7 HKO C12 C7 C 0 1 N N R 192.615 90.581 -13.614 1.035 1.239 0.570 C12 HKO 8 HKO C13 C8 C 0 1 N N S 191.295 89.821 -16.372 -2.595 1.022 0.155 C13 HKO 9 HKO C21 C9 C 0 1 N N R 188.168 87.241 -10.749 2.115 -5.080 -0.727 C21 HKO 10 HKO C22 C10 C 0 1 N N N 193.282 89.395 -12.887 2.072 0.349 1.257 C22 HKO 11 HKO C23 C11 C 0 1 N N S 191.004 90.659 -17.649 -3.529 1.752 -0.789 C23 HKO 12 HKO C31 C12 C 0 1 N N N 188.233 87.337 -9.283 0.974 -5.503 -1.657 C31 HKO 13 HKO C32 C13 C 0 1 N N R 192.443 88.835 -11.724 2.311 -0.903 0.410 C32 HKO 14 HKO C33 C14 C 0 1 N N S 189.706 90.405 -18.342 -4.990 1.484 -0.475 C33 HKO 15 HKO C41 C15 C 0 1 N N N 189.056 86.281 -8.682 -0.213 -5.973 -0.810 C41 HKO 16 HKO C42 C16 C 0 1 N N S 190.940 89.090 -11.911 0.998 -1.673 0.257 C42 HKO 17 HKO C43 C17 C 0 1 N N R 189.262 88.985 -18.240 -5.271 1.566 1.015 C43 HKO 18 HKO C51 C18 C 0 1 N N S 190.422 86.130 -9.348 -0.626 -4.848 0.143 C51 HKO 19 HKO C52 C19 C 0 1 N N R 190.594 88.984 -13.409 -0.039 -0.783 -0.430 C52 HKO 20 HKO C53 C20 C 0 1 N N S 189.513 88.173 -16.949 -4.107 1.462 1.993 C53 HKO 21 HKO C61 C21 C 0 1 N N N 191.081 84.880 -8.841 -1.772 -5.330 1.034 C61 HKO 22 HKO C62 C22 C 0 1 N N R 191.128 90.300 -14.004 -0.278 0.469 0.417 C62 HKO 23 HKO C83 C23 C 0 1 N N N 187.937 89.323 -17.548 -4.838 2.799 1.800 C83 HKO 24 HKO C93 C24 C 0 1 N N N 189.061 92.770 -18.335 -6.053 2.078 -2.568 C93 HKO 25 HKO N1 N1 N 0 1 Y N N 197.317 93.393 -16.461 6.095 2.433 0.072 N1 HKO 26 HKO N12 N2 N 0 1 N N N 193.491 91.036 -14.698 1.528 1.632 -0.753 N12 HKO 27 HKO N21 N3 N 0 1 N N N 187.437 88.439 -11.276 3.232 -4.558 -1.526 N21 HKO 28 HKO N32 N4 N 0 1 N N N 192.877 89.445 -10.471 3.306 -1.758 1.070 N32 HKO 29 HKO N33 N5 N 0 1 N N N 188.674 91.445 -17.885 -5.819 2.476 -1.173 N33 HKO 30 HKO N61 N6 N 0 1 N N N 192.443 85.139 -8.409 -2.191 -4.240 1.926 N61 HKO 31 HKO O11 O2 O 0 1 N N N 190.203 88.341 -10.954 1.221 -2.842 -0.534 O11 HKO 32 HKO O2 O3 O 0 1 N N N 193.766 92.984 -12.784 1.513 4.060 -0.312 O2 HKO 33 HKO O23 O4 O 0 1 N N N 192.078 90.472 -18.579 -3.260 1.329 -2.127 O23 HKO 34 HKO O43 O5 O 0 1 N N N 188.420 88.470 -19.293 -6.489 0.945 1.431 O43 HKO 35 HKO O51 O6 O 0 1 N N N 190.316 86.057 -10.820 0.489 -4.482 0.958 O51 HKO 36 HKO O52 O7 O 0 1 N N N 189.216 88.926 -13.689 -1.265 -1.503 -0.573 O52 HKO 37 HKO O53 O8 O 0 1 N N N 190.865 88.410 -16.408 -2.774 1.399 1.505 O53 HKO 38 HKO O62 O9 O 0 1 N N N 190.706 90.516 -15.349 -1.247 1.301 -0.226 O62 HKO 39 HKO S1 S1 S 0 1 N N N 193.959 92.653 -14.391 2.316 3.075 -0.948 S1 HKO 40 HKO H1 H1 H 0 1 N N N 196.444 92.578 -12.833 2.957 3.754 1.789 H1 HKO 41 HKO H2 H2 H 0 1 N N N 198.807 92.949 -13.526 5.105 3.580 3.029 H2 HKO 42 HKO H3 H3 H 0 1 N N N 199.314 93.469 -15.883 7.098 2.719 1.867 H3 HKO 43 HKO H4 H4 H 0 1 N N N 195.284 93.287 -16.894 4.954 2.194 -1.647 H4 HKO 44 HKO H5 H5 H 0 1 N N N 189.501 87.113 -12.449 2.408 -3.715 0.915 H5 HKO 45 HKO H6 H6 H 0 1 N N N 192.577 91.398 -12.878 0.864 2.131 1.173 H6 HKO 46 HKO H7 H7 H 0 1 N N N 192.386 89.832 -16.230 -2.771 -0.050 0.064 H7 HKO 47 HKO H8 H8 H 0 1 N N N 187.622 86.330 -11.034 2.452 -5.941 -0.148 H8 HKO 48 HKO H9 H9 H 0 1 N N N 193.447 88.588 -13.616 3.007 0.898 1.366 H9 HKO 49 HKO H10 H10 H 0 1 N N N 194.250 89.732 -12.487 1.705 0.057 2.241 H10 HKO 50 HKO H11 H11 H 0 1 N N N 191.005 91.714 -17.337 -3.342 2.823 -0.713 H11 HKO 51 HKO H12 H12 H 0 1 N N N 188.661 88.314 -9.013 0.671 -4.655 -2.271 H12 HKO 52 HKO H13 H13 H 0 1 N N N 187.212 87.260 -8.880 1.309 -6.318 -2.298 H13 HKO 53 HKO H14 H14 H 0 1 N N N 192.605 87.748 -11.674 2.678 -0.611 -0.574 H14 HKO 54 HKO H15 H15 H 0 1 N N N 189.880 90.601 -19.410 -5.253 0.489 -0.832 H15 HKO 55 HKO H16 H16 H 0 1 N N N 188.517 85.326 -8.769 -1.049 -6.223 -1.462 H16 HKO 56 HKO H17 H17 H 0 1 N N N 189.210 86.520 -7.619 0.076 -6.852 -0.234 H17 HKO 57 HKO H18 H18 H 0 1 N N N 190.794 90.150 -11.657 0.631 -1.965 1.241 H18 HKO 58 HKO H19 H19 H 0 1 N N N 191.042 86.996 -9.073 -0.954 -3.984 -0.435 H19 HKO 59 HKO H20 H20 H 0 1 N N N 191.132 88.133 -13.852 0.328 -0.491 -1.414 H20 HKO 60 HKO H21 H21 H 0 1 N N N 189.210 87.118 -17.015 -4.288 0.938 2.932 H21 HKO 61 HKO H23 H23 H 0 1 N N N 190.503 84.490 -7.990 -2.614 -5.634 0.412 H23 HKO 62 HKO H24 H24 H 0 1 N N N 191.097 84.131 -9.647 -1.437 -6.178 1.631 H24 HKO 63 HKO H25 H25 H 0 1 N N N 190.582 91.064 -13.432 -0.645 0.177 1.401 H25 HKO 64 HKO H26 H26 H 0 1 N N N 187.748 90.316 -17.114 -4.316 3.585 1.255 H26 HKO 65 HKO H27 H27 H 0 1 N N N 186.985 88.877 -17.871 -5.490 3.137 2.606 H27 HKO 66 HKO H29 H29 H 0 1 N N N 188.313 93.504 -18.001 -6.669 2.830 -3.062 H29 HKO 67 HKO H30 H30 H 0 1 N N N 190.043 93.028 -17.912 -5.098 1.994 -3.087 H30 HKO 68 HKO H31 H31 H 0 1 N N N 189.120 92.781 -19.433 -6.565 1.116 -2.591 H31 HKO 69 HKO H32 H32 H 0 1 N N N 193.001 90.988 -15.568 1.393 1.046 -1.514 H32 HKO 70 HKO H33 H33 H 0 1 N N N 186.520 88.473 -10.878 3.581 -5.260 -2.161 H33 HKO 71 HKO H34 H34 H 0 1 N N N 187.937 89.269 -11.031 2.961 -3.723 -2.024 H34 HKO 72 HKO H36 H36 H 0 1 N N N 192.332 89.081 -9.716 4.183 -1.271 1.183 H36 HKO 73 HKO H37 H37 H 0 1 N N N 193.843 89.236 -10.316 2.963 -2.094 1.957 H37 HKO 74 HKO H39 H39 H 0 1 N N N 187.780 91.214 -18.269 -6.691 2.624 -0.688 H39 HKO 75 HKO H41 H41 H 0 1 N N N 192.855 84.290 -8.077 -2.536 -3.453 1.397 H41 HKO 76 HKO H42 H42 H 0 1 N N N 192.976 85.490 -9.179 -2.881 -4.560 2.589 H42 HKO 77 HKO H44 H44 H 0 1 N N N 192.907 90.632 -18.143 -2.355 1.505 -2.420 H44 HKO 78 HKO H45 H45 H 0 1 N N N 188.207 87.562 -19.113 -7.206 1.015 0.787 H45 HKO 79 HKO H46 H46 H 0 1 N N N 188.854 88.123 -13.334 -1.212 -2.253 -1.180 H46 HKO 80 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HKO O43 C43 SING N N 1 HKO O23 C23 SING N N 2 HKO C33 C43 SING N N 3 HKO C33 N33 SING N N 4 HKO C33 C23 SING N N 5 HKO C93 N33 SING N N 6 HKO C43 C83 SING N N 7 HKO C43 C53 SING N N 8 HKO C23 C13 SING N N 9 HKO C53 O53 SING N N 10 HKO N1 C5 DOUB Y N 11 HKO N1 C4 SING Y N 12 HKO O53 C13 SING N N 13 HKO C13 O62 SING N N 14 HKO C5 C1 SING Y N 15 HKO C4 C3 DOUB Y N 16 HKO O62 C62 SING N N 17 HKO O1 S1 DOUB N N 18 HKO C1 S1 SING N N 19 HKO C1 C2 DOUB Y N 20 HKO N12 S1 SING N N 21 HKO N12 C12 SING N N 22 HKO S1 O2 DOUB N N 23 HKO C3 C2 SING Y N 24 HKO C62 C12 SING N N 25 HKO C62 C52 SING N N 26 HKO O52 C52 SING N N 27 HKO C12 C22 SING N N 28 HKO C52 C42 SING N N 29 HKO C22 C32 SING N N 30 HKO C42 C32 SING N N 31 HKO C42 O11 SING N N 32 HKO C32 N32 SING N N 33 HKO C11 O11 SING N N 34 HKO C11 O51 SING N N 35 HKO C11 C21 SING N N 36 HKO N21 C21 SING N N 37 HKO O51 C51 SING N N 38 HKO C21 C31 SING N N 39 HKO C51 C61 SING N N 40 HKO C51 C41 SING N N 41 HKO C31 C41 SING N N 42 HKO C61 N61 SING N N 43 HKO C2 H1 SING N N 44 HKO C3 H2 SING N N 45 HKO C4 H3 SING N N 46 HKO C5 H4 SING N N 47 HKO C11 H5 SING N N 48 HKO C12 H6 SING N N 49 HKO C13 H7 SING N N 50 HKO C21 H8 SING N N 51 HKO C22 H9 SING N N 52 HKO C22 H10 SING N N 53 HKO C23 H11 SING N N 54 HKO C31 H12 SING N N 55 HKO C31 H13 SING N N 56 HKO C32 H14 SING N N 57 HKO C33 H15 SING N N 58 HKO C41 H16 SING N N 59 HKO C41 H17 SING N N 60 HKO C42 H18 SING N N 61 HKO C51 H19 SING N N 62 HKO C52 H20 SING N N 63 HKO C53 H21 SING N N 64 HKO C61 H23 SING N N 65 HKO C61 H24 SING N N 66 HKO C62 H25 SING N N 67 HKO C83 H26 SING N N 68 HKO C83 H27 SING N N 69 HKO C93 H29 SING N N 70 HKO C93 H30 SING N N 71 HKO C93 H31 SING N N 72 HKO N12 H32 SING N N 73 HKO N21 H33 SING N N 74 HKO N21 H34 SING N N 75 HKO N32 H36 SING N N 76 HKO N32 H37 SING N N 77 HKO N33 H39 SING N N 78 HKO N61 H41 SING N N 79 HKO N61 H42 SING N N 80 HKO O23 H44 SING N N 81 HKO O43 H45 SING N N 82 HKO O52 H46 SING N N 83 HKO C53 C83 SING N N 84 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HKO InChI InChI 1.03 "InChI=1S/C24H40N6O9S/c1-28-21-18(32)23(37-16-8-24(16,21)33)39-20-15(30-40(34,35)12-3-2-6-29-10-12)7-14(27)19(17(20)31)38-22-13(26)5-4-11(9-25)36-22/h2-3,6,10-11,13-23,28,30-33H,4-5,7-9,25-27H2,1H3/t11-,13+,14+,15+,16-,17+,18-,19-,20+,21-,22+,23+,24-/m0/s1" HKO InChIKey InChI 1.03 PLNNWXHFRHQFIG-QUYPYEIISA-N HKO SMILES_CANONICAL CACTVS 3.385 "CN[C@H]1[C@H](O)[C@H](O[C@H]2C[C@@]12O)O[C@@H]3[C@@H](C[C@@H](N)[C@H](O[C@H]4O[C@H](CN)CC[C@H]4N)[C@H]3O)N[S](=O)(=O)c5cccnc5" HKO SMILES CACTVS 3.385 "CN[CH]1[CH](O)[CH](O[CH]2C[C]12O)O[CH]3[CH](C[CH](N)[CH](O[CH]4O[CH](CN)CC[CH]4N)[CH]3O)N[S](=O)(=O)c5cccnc5" HKO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN[C@H]1[C@@H]([C@H](OC2[C@]1(C2)O)O[C@@H]3[C@@H](C[C@H]([C@@H]([C@H]3O)O[C@@H]4[C@@H](CC[C@H](O4)CN)N)N)NS(=O)(=O)c5cccnc5)O" HKO SMILES "OpenEye OEToolkits" 2.0.7 "CNC1C(C(OC2C1(C2)O)OC3C(CC(C(C3O)OC4C(CCC(O4)CN)N)N)NS(=O)(=O)c5cccnc5)O" # _pdbx_chem_comp_identifier.comp_id HKO _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{R},2~{R},3~{R},4~{S},5~{R})-4-[(2~{R},3~{R},6~{S})-6-(aminomethyl)-3-azanyl-oxan-2-yl]oxy-5-azanyl-2-[[(3~{S},4~{S},5~{S},6~{R})-5-(methylamino)-4,6-bis(oxidanyl)-2-oxabicyclo[4.1.0]heptan-3-yl]oxy]-3-oxidanyl-cyclohexyl]pyridine-3-sulfonamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HKO "Create component" 2021-01-15 PDBJ HKO "Modify atom id" 2021-03-10 PDBJ HKO "Modify formula" 2021-03-10 PDBJ HKO "Modify name" 2021-03-10 PDBJ HKO "Initial release" 2022-01-12 RCSB ##