data_HL9 # _chem_comp.id HL9 _chem_comp.name "5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H29 N5 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-10-04 _chem_comp.pdbx_modified_date 2020-10-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 403.542 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HL9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6T1E _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HL9 C01 C1 C 0 1 N N S 17.850 27.872 -9.917 -5.504 0.948 -0.456 C01 HL9 1 HL9 C05 C2 C 0 1 N N N 15.234 29.368 -8.261 -7.123 -2.005 -0.187 C05 HL9 2 HL9 C08 C3 C 0 1 N N S 17.226 29.194 -9.472 -6.669 0.092 -0.989 C08 HL9 3 HL9 C10 C4 C 0 1 N N R 17.572 29.478 -7.972 -7.900 0.147 -0.076 C10 HL9 4 HL9 C12 C5 C 0 1 N N N 18.369 28.272 -7.434 -7.676 1.044 1.157 C12 HL9 5 HL9 C14 C6 C 0 1 N N N 17.231 27.228 -11.138 -4.162 0.265 -0.726 C14 HL9 6 HL9 C15 C7 C 0 1 N N N 18.143 26.142 -11.727 -3.022 1.192 -0.299 C15 HL9 7 HL9 C16 C8 C 0 1 N N N 17.504 25.445 -12.927 -1.680 0.509 -0.568 C16 HL9 8 HL9 C17 C9 C 0 1 N N N 18.471 24.482 -13.629 -0.541 1.436 -0.141 C17 HL9 9 HL9 C18 C10 C 0 1 N N N 22.090 24.916 -14.668 3.217 0.743 -0.366 C18 HL9 10 HL9 C19 C11 C 0 1 N N N 23.259 24.990 -13.805 4.305 1.806 -0.547 C19 HL9 11 HL9 C20 C12 C 0 1 N N N 22.383 24.267 -15.960 3.583 -0.153 0.820 C20 HL9 12 HL9 C21 C13 C 0 1 N N N 23.625 24.829 -16.653 4.954 -0.786 0.572 C21 HL9 13 HL9 C22 C14 C 0 1 N N N 24.539 25.422 -14.508 5.655 1.116 -0.755 C22 HL9 14 HL9 C23 C15 C 0 1 N N N 19.700 25.158 -14.224 0.781 0.764 -0.407 C23 HL9 15 HL9 C24 C16 C 0 1 Y N N 26.001 24.507 -16.331 7.239 -0.269 0.309 C24 HL9 16 HL9 C25 C17 C 0 1 Y N N 26.225 24.155 -17.691 7.440 -1.648 0.366 C25 HL9 17 HL9 C26 C18 C 0 1 Y N N 27.123 24.649 -15.512 8.352 0.555 0.147 C26 HL9 18 HL9 C27 C19 C 0 1 Y N N 28.369 24.427 -16.095 9.603 -0.019 0.055 C27 HL9 19 HL9 C28 C20 C 0 1 Y N N 27.517 23.950 -18.147 8.723 -2.142 0.266 C28 HL9 20 HL9 N02 N1 N 0 1 N N N 16.249 29.623 -7.379 -8.079 -1.245 0.365 N02 HL9 21 HL9 N06 N2 N 0 1 N N N 15.759 29.174 -9.510 -6.276 -1.326 -0.973 N06 HL9 22 HL9 N09 N3 N 0 1 N N N 20.862 24.473 -14.118 1.932 1.397 -0.108 N09 HL9 23 HL9 N11 N4 N 0 1 N N N 24.740 24.787 -15.792 5.960 0.271 0.406 N11 HL9 24 HL9 N13 N5 N 0 1 Y N N 28.601 24.067 -17.368 9.752 -1.329 0.117 N13 HL9 25 HL9 O03 O1 O 0 1 N N N 14.023 29.438 -7.960 -7.031 -3.202 0.008 O03 HL9 26 HL9 O07 O2 O 0 1 N N N 19.648 26.277 -14.774 0.809 -0.348 -0.890 O07 HL9 27 HL9 S04 S1 S 0 1 N N N 17.744 26.847 -8.420 -5.847 1.020 1.349 S04 HL9 28 HL9 H011 H1 H 0 0 N N N 18.924 28.028 -10.098 -5.525 1.946 -0.893 H011 HL9 29 HL9 H081 H2 H 0 0 N N N 17.616 30.014 -10.093 -6.935 0.404 -1.999 H081 HL9 30 HL9 H101 H3 H 0 0 N N N 18.163 30.402 -7.886 -8.771 0.486 -0.636 H101 HL9 31 HL9 H122 H4 H 0 0 N N N 18.173 28.121 -6.362 -8.031 2.057 0.967 H122 HL9 32 HL9 H121 H5 H 0 0 N N N 19.448 28.414 -7.593 -8.166 0.623 2.036 H121 HL9 33 HL9 H142 H6 H 0 0 N N N 17.058 28.001 -11.901 -4.106 -0.664 -0.158 H142 HL9 34 HL9 H141 H7 H 0 0 N N N 16.271 26.772 -10.854 -4.073 0.046 -1.790 H141 HL9 35 HL9 H151 H8 H 0 0 N N N 18.349 25.392 -10.949 -3.078 2.121 -0.866 H151 HL9 36 HL9 H152 H9 H 0 0 N N N 19.087 26.607 -12.048 -3.111 1.411 0.766 H152 HL9 37 HL9 H162 H10 H 0 0 N N N 17.181 26.210 -13.649 -1.625 -0.420 -0.001 H162 HL9 38 HL9 H161 H11 H 0 0 N N N 16.629 24.876 -12.580 -1.591 0.290 -1.633 H161 HL9 39 HL9 H171 H12 H 0 0 N N N 17.927 23.977 -14.441 -0.596 2.365 -0.709 H171 HL9 40 HL9 H172 H13 H 0 0 N N N 18.809 23.736 -12.895 -0.630 1.655 0.923 H172 HL9 41 HL9 H181 H14 H 0 0 N N N 21.900 25.964 -14.942 3.144 0.140 -1.271 H181 HL9 42 HL9 H192 H15 H 0 0 N N N 23.048 25.712 -13.002 4.073 2.421 -1.416 H192 HL9 43 HL9 H191 H16 H 0 0 N N N 23.427 23.995 -13.368 4.351 2.435 0.343 H191 HL9 44 HL9 H202 H17 H 0 0 N N N 21.518 24.408 -16.625 3.618 0.444 1.731 H202 HL9 45 HL9 H201 H18 H 0 0 N N N 22.538 23.192 -15.783 2.833 -0.938 0.928 H201 HL9 46 HL9 H212 H19 H 0 0 N N N 23.839 24.230 -17.550 5.223 -1.414 1.421 H212 HL9 47 HL9 H211 H20 H 0 0 N N N 23.434 25.872 -16.945 4.915 -1.395 -0.331 H211 HL9 48 HL9 H221 H21 H 0 0 N N N 25.392 25.173 -13.860 5.613 0.498 -1.653 H221 HL9 49 HL9 H222 H22 H 0 0 N N N 24.501 26.511 -14.661 6.434 1.870 -0.870 H222 HL9 50 HL9 H251 H23 H 0 0 N N N 25.389 24.048 -18.367 6.603 -2.319 0.487 H251 HL9 51 HL9 H261 H24 H 0 0 N N N 27.029 24.919 -14.471 8.237 1.628 0.094 H261 HL9 52 HL9 H271 H25 H 0 0 N N N 29.233 24.557 -15.461 10.471 0.611 -0.071 H271 HL9 53 HL9 H281 H26 H 0 0 N N N 27.658 23.682 -19.184 8.889 -3.209 0.309 H281 HL9 54 HL9 H021 H27 H 0 0 N N N 16.098 29.882 -6.425 -8.777 -1.563 0.959 H021 HL9 55 HL9 H061 H28 H 0 0 N N N 15.215 29.037 -10.338 -5.525 -1.707 -1.454 H061 HL9 56 HL9 H091 H29 H 0 0 N N N 20.853 23.604 -13.623 1.910 2.287 0.279 H091 HL9 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HL9 C28 C25 DOUB Y N 1 HL9 C28 N13 SING Y N 2 HL9 C25 C24 SING Y N 3 HL9 N13 C27 DOUB Y N 4 HL9 C21 C20 SING N N 5 HL9 C21 N11 SING N N 6 HL9 C24 N11 SING N N 7 HL9 C24 C26 DOUB Y N 8 HL9 C27 C26 SING Y N 9 HL9 C20 C18 SING N N 10 HL9 N11 C22 SING N N 11 HL9 O07 C23 DOUB N N 12 HL9 C18 N09 SING N N 13 HL9 C18 C19 SING N N 14 HL9 C22 C19 SING N N 15 HL9 C23 N09 SING N N 16 HL9 C23 C17 SING N N 17 HL9 C17 C16 SING N N 18 HL9 C16 C15 SING N N 19 HL9 C15 C14 SING N N 20 HL9 C14 C01 SING N N 21 HL9 C01 C08 SING N N 22 HL9 C01 S04 SING N N 23 HL9 N06 C08 SING N N 24 HL9 N06 C05 SING N N 25 HL9 C08 C10 SING N N 26 HL9 S04 C12 SING N N 27 HL9 C05 O03 DOUB N N 28 HL9 C05 N02 SING N N 29 HL9 C10 C12 SING N N 30 HL9 C10 N02 SING N N 31 HL9 C01 H011 SING N N 32 HL9 C08 H081 SING N N 33 HL9 C10 H101 SING N N 34 HL9 C12 H122 SING N N 35 HL9 C12 H121 SING N N 36 HL9 C14 H142 SING N N 37 HL9 C14 H141 SING N N 38 HL9 C15 H151 SING N N 39 HL9 C15 H152 SING N N 40 HL9 C16 H162 SING N N 41 HL9 C16 H161 SING N N 42 HL9 C17 H171 SING N N 43 HL9 C17 H172 SING N N 44 HL9 C18 H181 SING N N 45 HL9 C19 H192 SING N N 46 HL9 C19 H191 SING N N 47 HL9 C20 H202 SING N N 48 HL9 C20 H201 SING N N 49 HL9 C21 H212 SING N N 50 HL9 C21 H211 SING N N 51 HL9 C22 H221 SING N N 52 HL9 C22 H222 SING N N 53 HL9 C25 H251 SING N N 54 HL9 C26 H261 SING N N 55 HL9 C27 H271 SING N N 56 HL9 C28 H281 SING N N 57 HL9 N02 H021 SING N N 58 HL9 N06 H061 SING N N 59 HL9 N09 H091 SING N N 60 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HL9 InChI InChI 1.03 "InChI=1S/C20H29N5O2S/c26-18(4-2-1-3-17-19-16(13-28-17)23-20(27)24-19)22-14-7-11-25(12-8-14)15-5-9-21-10-6-15/h5-6,9-10,14,16-17,19H,1-4,7-8,11-13H2,(H,22,26)(H2,23,24,27)/t16-,17-,19-/m0/s1" HL9 InChIKey InChI 1.03 GEHXEZPHNHPYOB-LNLFQRSKSA-N HL9 SMILES_CANONICAL CACTVS 3.385 "O=C(CCCC[C@@H]1SC[C@@H]2NC(=O)N[C@H]12)NC3CCN(CC3)c4ccncc4" HL9 SMILES CACTVS 3.385 "O=C(CCCC[CH]1SC[CH]2NC(=O)N[CH]12)NC3CCN(CC3)c4ccncc4" HL9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cnccc1N2CCC(CC2)NC(=O)CCCC[C@H]3[C@@H]4[C@H](CS3)NC(=O)N4" HL9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cnccc1N2CCC(CC2)NC(=O)CCCCC3C4C(CS3)NC(=O)N4" # _pdbx_chem_comp_identifier.comp_id HL9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[(3~{a}~{S},4~{S},6~{a}~{R})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{N}-(1-pyridin-4-ylpiperidin-4-yl)pentanamide" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HL9 "Create component" 2019-10-04 PDBE HL9 "Initial release" 2020-10-14 RCSB ##