data_HMR # _chem_comp.id HMR _chem_comp.name BETA-HOMOARGININE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C7 H16 N4 O2" _chem_comp.mon_nstd_parent_comp_id ARG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 188.228 _chem_comp.one_letter_code R _chem_comp.three_letter_code HMR _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1ABI _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HMR N N N 0 1 N N N Y Y N 16.227 -12.065 21.004 1.162 -0.867 1.789 N HMR 1 HMR CB CA C 0 1 N N S N N N 14.803 -12.168 20.579 0.103 0.146 1.709 CA HMR 2 HMR CC CB C 0 1 N N N N N N 13.864 -11.820 21.722 -0.665 -0.020 0.397 CB HMR 3 HMR CG CG C 0 1 N N N N N N 12.528 -11.183 21.356 0.294 0.150 -0.781 CG HMR 4 HMR CD CD C 0 1 N N N N N N 11.820 -10.870 22.639 -0.474 -0.017 -2.093 CD HMR 5 HMR NE NE N 0 1 N N N N N N 11.510 -12.109 23.371 0.444 0.146 -3.222 NE HMR 6 HMR CZ CZ C 0 1 N N N N N N 10.790 -12.013 24.478 -0.022 0.038 -4.510 CZ HMR 7 HMR NH1 NH1 N 0 1 N N N N N N 10.515 -10.776 24.939 -1.283 -0.210 -4.728 NH1 HMR 8 HMR NH2 NH2 N 0 1 N N N N N N 10.332 -13.076 25.107 0.839 0.192 -5.570 NH2 HMR 9 HMR C C C 0 1 N N N Y N Y 15.118 -12.178 18.223 -0.099 0.140 4.181 C HMR 10 HMR O O O 0 1 N N N Y N Y 14.523 -13.239 17.904 1.086 0.371 4.161 O HMR 11 HMR CA CH2 C 0 1 N N N Y N N 14.481 -11.324 19.333 -0.856 -0.024 2.888 CH2 HMR 12 HMR OXT OXT O 0 1 N Y N Y N Y 16.340 -11.828 17.772 -0.742 0.031 5.354 OXT HMR 13 HMR H H H 0 1 N N N Y Y N 16.857 -12.298 20.236 1.707 -0.785 0.944 H HMR 14 HMR H2 H2 H 0 1 N Y N Y Y N 16.414 -12.633 21.830 0.706 -1.767 1.753 H2 HMR 15 HMR HB HA H 0 1 N N N N N N 14.640 -13.233 20.292 0.548 1.140 1.745 HA HMR 16 HMR HB2 HB2 H 0 1 N N N N N N 13.684 -12.728 22.343 -1.111 -1.014 0.361 HB2 HMR 17 HMR HB3 HB3 H 0 1 N N N N N N 14.396 -11.169 22.454 -1.451 0.732 0.338 HB3 HMR 18 HMR HG2 HG2 H 0 1 N N N N N N 12.635 -10.296 20.688 0.739 1.144 -0.745 HG2 HMR 19 HMR HG3 HG3 H 0 1 N N N N N N 11.920 -11.810 20.663 1.080 -0.602 -0.722 HG3 HMR 20 HMR HD2 HD2 H 0 1 N N N N N N 12.396 -10.150 23.266 -0.920 -1.011 -2.129 HD2 HMR 21 HMR HD3 HD3 H 0 1 N N N N N N 10.909 -10.249 22.469 -1.260 0.735 -2.152 HD3 HMR 22 HMR HE HE H 0 1 N N N N N N 12.379 -12.600 23.578 1.383 0.331 -3.061 HE HMR 23 HMR HH1 HH1 H 0 1 N N N N N N 11.221 -10.128 24.590 -1.613 -0.286 -5.637 HH1 HMR 24 HMR HH21 HH21 H 0 0 N N N N N N 9.777 -13.002 25.959 0.510 0.115 -6.479 HH21 HMR 25 HMR HH22 HH22 H 0 0 N N N N N N 11.125 -13.686 25.303 1.778 0.377 -5.408 HH22 HMR 26 HMR HC1 HC1 H 0 1 N N N Y N N 13.403 -11.077 19.187 -1.642 0.728 2.829 HC1 HMR 27 HMR HC2 HC2 H 0 1 N N N Y N N 14.819 -10.262 19.373 -1.302 -1.018 2.853 HC2 HMR 28 HMR HXT HXT H 0 1 N Y N Y N Y 16.789 -11.026 18.013 -0.256 0.137 6.183 HXT HMR 29 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HMR N CB SING N N 1 HMR N H SING N N 2 HMR N H2 SING N N 3 HMR CB CC SING N N 4 HMR CB CA SING N N 5 HMR CB HB SING N N 6 HMR CC CG SING N N 7 HMR CC HB2 SING N N 8 HMR CC HB3 SING N N 9 HMR CG CD SING N N 10 HMR CG HG2 SING N N 11 HMR CG HG3 SING N N 12 HMR CD NE SING N N 13 HMR CD HD2 SING N N 14 HMR CD HD3 SING N N 15 HMR NE CZ SING N N 16 HMR NE HE SING N N 17 HMR CZ NH1 DOUB N N 18 HMR CZ NH2 SING N N 19 HMR NH1 HH1 SING N N 20 HMR NH2 HH21 SING N N 21 HMR NH2 HH22 SING N N 22 HMR C O DOUB N N 23 HMR C CA SING N N 24 HMR C OXT SING N N 25 HMR CA HC1 SING N N 26 HMR CA HC2 SING N N 27 HMR OXT HXT SING N N 28 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HMR SMILES ACDLabs 10.04 "O=C(O)CC(N)CCCNC(=[N@H])N" HMR SMILES_CANONICAL CACTVS 3.341 "N[C@@H](CCCNC(N)=N)CC(O)=O" HMR SMILES CACTVS 3.341 "N[CH](CCCNC(N)=N)CC(O)=O" HMR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C(C[C@@H](CC(=O)O)N)CNC(=N)N" HMR SMILES "OpenEye OEToolkits" 1.5.0 "C(CC(CC(=O)O)N)CNC(=N)N" HMR InChI InChI 1.03 "InChI=1S/C7H16N4O2/c8-5(4-6(12)13)2-1-3-11-7(9)10/h5H,1-4,8H2,(H,12,13)(H4,9,10,11)/t5-/m0/s1" HMR InChIKey InChI 1.03 VNWXCGKMEWXYBP-YFKPBYRVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HMR "SYSTEMATIC NAME" ACDLabs 10.04 "(3S)-3-amino-6-carbamimidamidohexanoic acid" HMR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(3S)-3-amino-6-carbamimidamido-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HMR "Create component" 1999-07-08 RCSB HMR "Modify descriptor" 2011-06-04 RCSB HMR "Modify backbone" 2023-11-03 PDBE HMR "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id HMR _pdbx_chem_comp_pcm.modified_residue_id ARG _pdbx_chem_comp_pcm.type "Beta-amino acid" _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid backbone" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #