data_HMS # _chem_comp.id HMS _chem_comp.name 5-O-phosphono-L-ribulose _chem_comp.type SACCHARIDE _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H11 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-01-14 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 230.110 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HMS _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HMS O1 O1 O 0 1 N N N 0.381 2.292 -0.072 -3.506 -1.380 0.110 O1 HMS 1 HMS P1 P1 P 0 1 N N N -0.757 1.291 -0.054 -3.189 0.065 0.080 P1 HMS 2 HMS O2 O2 O 0 1 N N N -1.659 1.333 1.207 -3.539 0.661 -1.374 O2 HMS 3 HMS O3 O3 O 0 1 N N N -1.701 1.336 -1.283 -4.061 0.829 1.197 O3 HMS 4 HMS O4 O4 O 0 1 N N N -0.093 -0.083 -0.060 -1.623 0.277 0.384 O4 HMS 5 HMS C1 C1 C 0 1 N N N -0.659 -1.297 -0.092 -0.590 -0.363 -0.368 C1 HMS 6 HMS C2 C2 C 0 1 N N S 0.457 -2.369 0.026 0.775 0.055 0.182 C2 HMS 7 HMS O5 O5 O 0 1 N N N 1.337 -2.285 -1.101 0.966 1.455 -0.030 O5 HMS 8 HMS C3 C3 C 0 1 N N S -0.078 -3.825 0.098 1.876 -0.724 -0.541 C3 HMS 9 HMS O6 O6 O 0 1 N N N -0.794 -4.088 1.295 1.686 -2.125 -0.329 O6 HMS 10 HMS C4 C4 C 0 1 N N N 1.028 -4.763 -0.004 3.221 -0.313 0.001 C4 HMS 11 HMS O7 O7 O 0 1 N N N 1.287 -5.166 -1.126 3.823 -1.049 0.745 O7 HMS 12 HMS C5 C5 C 0 1 N N N 1.925 -5.077 1.096 3.815 1.017 -0.387 C5 HMS 13 HMS O8 O8 O 0 1 N N N 2.730 -6.225 0.843 5.084 1.176 0.250 O8 HMS 14 HMS H1 H1 H 0 1 N N N -1.115 1.342 1.986 -3.356 1.606 -1.466 H1 HMS 15 HMS H2 H2 H 0 1 N N N -2.604 1.345 -0.989 -5.017 0.743 1.076 H2 HMS 16 HMS H3 H3 H 0 1 N N N -1.364 -1.401 0.746 -0.699 -1.444 -0.288 H3 HMS 17 HMS H4 H4 H 0 1 N N N -1.208 -1.430 -1.036 -0.666 -0.067 -1.415 H4 HMS 18 HMS H5 H5 H 0 1 N N N 0.977 -2.151 0.971 0.818 -0.160 1.249 H5 HMS 19 HMS H6 H6 H 0 1 N N N 0.826 -2.266 -1.902 0.939 1.720 -0.960 H6 HMS 20 HMS H7 H7 H 0 1 N N N -0.774 -3.949 -0.744 1.833 -0.509 -1.608 H7 HMS 21 HMS H8 H8 H 0 1 N N N -0.185 -4.147 2.022 1.712 -2.389 0.601 H8 HMS 22 HMS H9 H9 H 0 1 N N N 2.590 -4.216 1.257 3.943 1.056 -1.469 H9 HMS 23 HMS H10 H10 H 0 1 N N N 1.305 -5.293 1.979 3.147 1.819 -0.071 H10 HMS 24 HMS H11 H11 H 0 1 N N N 2.909 -6.288 -0.088 5.525 2.012 0.045 H11 HMS 25 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HMS O1 P1 DOUB N N 1 HMS P1 O2 SING N N 2 HMS P1 O3 SING N N 3 HMS P1 O4 SING N N 4 HMS O4 C1 SING N N 5 HMS C1 C2 SING N N 6 HMS C2 O5 SING N N 7 HMS C2 C3 SING N N 8 HMS C3 O6 SING N N 9 HMS C3 C4 SING N N 10 HMS C4 O7 DOUB N N 11 HMS C4 C5 SING N N 12 HMS C5 O8 SING N N 13 HMS O2 H1 SING N N 14 HMS O3 H2 SING N N 15 HMS C1 H3 SING N N 16 HMS C1 H4 SING N N 17 HMS C2 H5 SING N N 18 HMS O5 H6 SING N N 19 HMS C3 H7 SING N N 20 HMS O6 H8 SING N N 21 HMS C5 H9 SING N N 22 HMS C5 H10 SING N N 23 HMS O8 H11 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HMS SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(=O)CO" HMS SMILES_CANONICAL CACTVS 3.341 "OCC(=O)[C@@H](O)[C@@H](O)CO[P](O)(O)=O" HMS SMILES CACTVS 3.341 "OCC(=O)[CH](O)[CH](O)CO[P](O)(O)=O" HMS SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]([C@@H](C(=O)CO)O)O)OP(=O)(O)O" HMS SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(=O)CO)O)O)OP(=O)(O)O" HMS InChI InChI 1.03 "InChI=1S/C5H11O8P/c6-1-3(7)5(9)4(8)2-13-14(10,11)12/h4-6,8-9H,1-2H2,(H2,10,11,12)/t4-,5+/m0/s1" HMS InChIKey InChI 1.03 FNZLKVNUWIIPSJ-CRCLSJGQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HMS "SYSTEMATIC NAME" ACDLabs 10.04 5-O-phosphono-L-ribulose HMS "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S,3S)-2,3,5-trihydroxy-4-oxo-pentyl] dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HMS "Create component" 2009-01-14 RCSB HMS "Modify descriptor" 2011-06-04 RCSB #