data_HN0 # _chem_comp.id HN0 _chem_comp.name ;2'-deoxy-N-[(2S,3S,5R)-5-hydroxy-2-pentyltetrahydrofuran-3-yl]guanosine 5'-(dihydrogen phosphate) ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C19 H30 N5 O9 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-08-15 _chem_comp.pdbx_modified_date 2012-02-20 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 503.443 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HN0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3T5K _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HN0 OP3 OP3 O 0 1 N Y N 5.992 -37.662 13.343 -7.930 0.771 -0.145 OP3 HN0 1 HN0 C C C 0 1 N N N 16.720 -38.918 13.479 2.947 -1.370 -2.129 C HN0 2 HN0 P P P 0 1 N N N 5.957 -37.849 14.940 -7.571 -0.792 -0.287 P HN0 3 HN0 C1 C1 C 0 1 N N R 18.095 -39.217 14.046 4.279 -1.813 -2.765 C1 HN0 4 HN0 N1 N1 N 0 1 N N N 15.151 -34.610 12.522 2.486 2.812 -0.687 N1 HN0 5 HN0 O1 O1 O 0 1 N N N 18.476 -40.566 13.954 4.272 -3.227 -2.971 O1 HN0 6 HN0 C2 C2 C 0 1 N N N 15.012 -35.698 13.392 2.360 1.457 -0.622 C2 HN0 7 HN0 N2 N2 N 0 1 N N N 16.096 -36.504 13.521 3.470 0.674 -0.821 N2 HN0 8 HN0 C3 C3 C 0 1 N N S 16.257 -37.741 14.357 3.359 -0.785 -0.756 C3 HN0 9 HN0 N3 N3 N 0 1 N N N 13.847 -35.924 14.069 1.207 0.877 -0.375 N3 HN0 10 HN0 C4 C4 C 0 1 Y N N 12.819 -34.987 13.816 0.098 1.599 -0.175 C4 HN0 11 HN0 O4 O4 O 0 1 N N N 18.057 -38.975 15.405 5.329 -1.458 -1.849 O4 HN0 12 HN0 C5 C5 C 0 1 Y N N 12.872 -33.874 12.966 0.162 2.996 -0.229 C5 HN0 13 HN0 C6 C6 C 0 1 N N N 14.131 -33.650 12.247 1.411 3.607 -0.490 C6 HN0 14 HN0 O6 O6 O 0 1 N N N 14.402 -32.735 11.456 1.513 4.821 -0.546 O6 HN0 15 HN0 C7 C7 C 0 1 N N S 17.325 -37.761 15.566 4.747 -1.436 -0.528 C7 HN0 16 HN0 N7 N7 N 0 1 Y N N 11.641 -33.174 12.980 -1.087 3.466 0.006 N7 HN0 17 HN0 C8 C8 C 0 1 Y N N 10.911 -33.868 13.832 -1.895 2.464 0.197 C8 HN0 18 HN0 C9 C9 C 0 1 N N N 18.430 -36.638 15.683 5.593 -0.583 0.419 C9 HN0 19 HN0 N9 N9 N 0 1 Y N N 11.551 -34.975 14.383 -1.207 1.289 0.094 N9 HN0 20 HN0 "C1'" "C1'" C 0 1 N N R 11.077 -35.937 15.354 -1.765 -0.057 0.245 "C1'" HN0 21 HN0 C10 C10 C 0 1 N N N 19.573 -36.837 16.726 6.905 -1.309 0.724 C10 HN0 22 HN0 C11 C11 C 0 1 N N N 20.585 -35.653 16.710 7.752 -0.456 1.671 C11 HN0 23 HN0 C12 C12 C 0 1 N N N 21.748 -35.788 17.731 9.064 -1.182 1.975 C12 HN0 24 HN0 C13 C13 C 0 1 N N N 23.132 -36.004 17.098 9.910 -0.329 2.923 C13 HN0 25 HN0 "C2'" "C2'" C 0 1 N N N 9.861 -35.548 16.151 -1.568 -0.547 1.693 "C2'" HN0 26 HN0 "C3'" "C3'" C 0 1 N N S 9.661 -36.898 16.806 -3.003 -0.838 2.193 "C3'" HN0 27 HN0 "O3'" "O3'" O 0 1 N N N 10.721 -37.025 17.758 -3.040 -2.040 2.966 "O3'" HN0 28 HN0 "C4'" "C4'" C 0 1 N N R 9.836 -37.848 15.621 -3.782 -1.011 0.864 "C4'" HN0 29 HN0 "O4'" "O4'" O 0 1 N N N 10.702 -37.134 14.699 -3.179 -0.032 -0.009 "O4'" HN0 30 HN0 "C5'" "C5'" C 0 1 N N N 8.548 -38.221 14.926 -5.269 -0.714 1.068 "C5'" HN0 31 HN0 "O5'" "O5'" O 0 1 N N N 7.434 -37.419 15.375 -5.980 -0.993 -0.140 "O5'" HN0 32 HN0 OP1 OP1 O 0 1 N N N 5.785 -39.299 15.236 -8.264 -1.556 0.775 OP1 HN0 33 HN0 OP2 OP2 O 0 1 N N N 4.990 -36.869 15.505 -8.048 -1.324 -1.729 OP2 HN0 34 HN0 H H H 0 1 N N N 16.780 -38.627 12.420 2.468 -0.605 -2.741 H HN0 35 HN0 HA HA H 0 1 N N N 16.048 -39.783 13.584 2.284 -2.225 -1.996 HA HN0 36 HN0 H1 H1 H 0 1 N N N 18.835 -38.571 13.551 4.426 -1.299 -3.714 H1 HN0 37 HN0 HN1 HN1 H 0 1 N N N 16.030 -34.497 12.059 3.352 3.208 -0.872 HN1 HN0 38 HN0 HO1 HO1 H 0 1 N N N 19.343 -40.677 14.327 5.083 -3.571 -3.369 HO1 HN0 39 HN0 HN2 HN2 H 0 1 N N N 16.898 -36.238 12.986 4.328 1.087 -1.004 HN2 HN0 40 HN0 H3 H3 H 0 1 N N N 15.278 -38.002 14.785 2.656 -1.086 0.022 H3 HN0 41 HN0 H7 H7 H 0 1 N N N 16.760 -37.783 16.510 4.637 -2.449 -0.140 H7 HN0 42 HN0 H8 H8 H 0 1 N N N 9.896 -33.598 14.083 -2.951 2.548 0.405 H8 HN0 43 HN0 H9 H9 H 0 1 N N N 18.903 -36.541 14.695 5.809 0.376 -0.051 H9 HN0 44 HN0 H9A H9A H 0 1 N N N 17.916 -35.699 15.937 5.045 -0.419 1.347 H9A HN0 45 HN0 "H1'" "H1'" H 0 1 N N N 11.891 -36.153 16.062 -1.274 -0.741 -0.447 "H1'" HN0 46 HN0 H10 H10 H 0 1 N N N 19.130 -36.913 17.730 6.690 -2.269 1.193 H10 HN0 47 HN0 H10A H10A H 0 0 N N N 20.110 -37.768 16.492 7.453 -1.474 -0.204 H10A HN0 48 HN0 H11 H11 H 0 1 N N N 21.019 -35.585 15.701 7.968 0.503 1.201 H11 HN0 49 HN0 H11A H11A H 0 0 N N N 20.035 -34.727 16.936 7.204 -0.292 2.599 H11A HN0 50 HN0 H12 H12 H 0 1 N N N 21.785 -34.868 18.332 8.848 -2.141 2.445 H12 HN0 51 HN0 H12A H12A H 0 0 N N N 21.532 -36.645 18.386 9.612 -1.346 1.048 H12A HN0 52 HN0 H13 H13 H 0 1 N N N 23.889 -36.088 17.891 10.126 0.631 2.453 H13 HN0 53 HN0 H13A H13A H 0 0 N N N 23.122 -36.928 16.501 9.363 -0.164 3.851 H13A HN0 54 HN0 H13B H13B H 0 0 N N N 23.375 -35.150 16.448 10.845 -0.846 3.140 H13B HN0 55 HN0 "H2'" "H2'" H 0 1 N N N 10.068 -34.749 16.879 -0.966 -1.456 1.710 "H2'" HN0 56 HN0 "H2'A" "H2'A" H 0 0 N N N 9.013 -35.254 15.515 -1.103 0.231 2.299 "H2'A" HN0 57 HN0 "H3'" "H3'" H 0 1 N Y N 8.661 -36.991 17.256 -3.394 0.002 2.767 "H3'" HN0 58 HN0 "HO3'" "HO3'" H 0 0 N N N 10.648 -37.860 18.205 -2.494 -2.012 3.763 "HO3'" HN0 59 HN0 "H4'" "H4'" H 0 1 N N N 10.335 -38.764 15.970 -3.644 -2.017 0.467 "H4'" HN0 60 HN0 "H5'" "H5'" H 0 1 N N N 8.675 -38.076 13.843 -5.657 -1.340 1.871 "H5'" HN0 61 HN0 "H5'A" "H5'A" H 0 0 N N N 8.328 -39.279 15.131 -5.397 0.336 1.331 "H5'A" HN0 62 HN0 HOP3 HOP3 H 0 0 N Y N 5.896 -38.508 12.922 -7.509 1.333 -0.809 HOP3 HN0 63 HN0 HOP2 HOP2 H 0 0 N N N 4.338 -37.328 16.021 -8.997 -1.234 -1.888 HOP2 HN0 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HN0 OP3 P SING N N 1 HN0 C C1 SING N N 2 HN0 C C3 SING N N 3 HN0 C H SING N N 4 HN0 C HA SING N N 5 HN0 P OP1 DOUB N N 6 HN0 P "O5'" SING N N 7 HN0 P OP2 SING N N 8 HN0 O1 C1 SING N N 9 HN0 C1 O4 SING N N 10 HN0 C1 H1 SING N N 11 HN0 C6 N1 SING N N 12 HN0 N1 C2 SING N N 13 HN0 N1 HN1 SING N N 14 HN0 O1 HO1 SING N N 15 HN0 C2 N2 SING N N 16 HN0 C2 N3 DOUB N N 17 HN0 N2 C3 SING N N 18 HN0 N2 HN2 SING N N 19 HN0 C3 C7 SING N N 20 HN0 C3 H3 SING N N 21 HN0 C4 N3 SING N N 22 HN0 C5 C4 DOUB Y N 23 HN0 C4 N9 SING Y N 24 HN0 O4 C7 SING N N 25 HN0 C6 C5 SING N N 26 HN0 C5 N7 SING Y N 27 HN0 O6 C6 DOUB N N 28 HN0 C7 C9 SING N N 29 HN0 C7 H7 SING N N 30 HN0 N7 C8 DOUB Y N 31 HN0 C8 N9 SING Y N 32 HN0 C8 H8 SING N N 33 HN0 C9 C10 SING N N 34 HN0 C9 H9 SING N N 35 HN0 C9 H9A SING N N 36 HN0 N9 "C1'" SING N N 37 HN0 "O4'" "C1'" SING N N 38 HN0 "C1'" "C2'" SING N N 39 HN0 "C1'" "H1'" SING N N 40 HN0 C11 C10 SING N N 41 HN0 C10 H10 SING N N 42 HN0 C10 H10A SING N N 43 HN0 C11 C12 SING N N 44 HN0 C11 H11 SING N N 45 HN0 C11 H11A SING N N 46 HN0 C13 C12 SING N N 47 HN0 C12 H12 SING N N 48 HN0 C12 H12A SING N N 49 HN0 C13 H13 SING N N 50 HN0 C13 H13A SING N N 51 HN0 C13 H13B SING N N 52 HN0 "C2'" "C3'" SING N N 53 HN0 "C2'" "H2'" SING N N 54 HN0 "C2'" "H2'A" SING N N 55 HN0 "C4'" "C3'" SING N N 56 HN0 "C3'" "O3'" SING N N 57 HN0 "C3'" "H3'" SING N N 58 HN0 "O3'" "HO3'" SING N N 59 HN0 "O4'" "C4'" SING N N 60 HN0 "C5'" "C4'" SING N N 61 HN0 "C4'" "H4'" SING N N 62 HN0 "C5'" "O5'" SING N N 63 HN0 "C5'" "H5'" SING N N 64 HN0 "C5'" "H5'A" SING N N 65 HN0 OP3 HOP3 SING N N 66 HN0 OP2 HOP2 SING N N 67 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HN0 SMILES ACDLabs 12.01 "O=P(O)(O)OCC4OC(n1c2N=C(NC(=O)c2nc1)NC3C(OC(O)C3)CCCCC)CC4O" HN0 InChI InChI 1.03 "InChI=1S/C19H30N5O9P/c1-2-3-4-5-12-10(6-15(26)33-12)21-19-22-17-16(18(27)23-19)20-9-24(17)14-7-11(25)13(32-14)8-31-34(28,29)30/h9-15,25-26H,2-8H2,1H3,(H2,28,29,30)(H2,21,22,23,27)/t10-,11-,12-,13+,14+,15+/m0/s1" HN0 InChIKey InChI 1.03 ITRPVFNWIAAYPZ-PKCACUDHSA-N HN0 SMILES_CANONICAL CACTVS 3.370 "CCCCC[C@@H]1O[C@@H](O)C[C@@H]1NC2=Nc3n(cnc3C(=O)N2)[C@H]4C[C@H](O)[C@@H](CO[P](O)(O)=O)O4" HN0 SMILES CACTVS 3.370 "CCCCC[CH]1O[CH](O)C[CH]1NC2=Nc3n(cnc3C(=O)N2)[CH]4C[CH](O)[CH](CO[P](O)(O)=O)O4" HN0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CCCCC[C@H]1[C@H](C[C@@H](O1)O)NC2=Nc3c(ncn3[C@H]4C[C@@H]([C@H](O4)COP(=O)(O)O)O)C(=O)N2" HN0 SMILES "OpenEye OEToolkits" 1.7.6 "CCCCCC1C(CC(O1)O)NC2=Nc3c(ncn3C4CC(C(O4)COP(=O)(O)O)O)C(=O)N2" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HN0 "SYSTEMATIC NAME" ACDLabs 12.01 ;2'-deoxy-N-[(2S,3S,5R)-5-hydroxy-2-pentyltetrahydrofuran-3-yl]guanosine 5'-(dihydrogen phosphate) ; HN0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3S,5R)-3-oxidanyl-5-[6-oxidanylidene-2-[[(2S,3S,5R)-5-oxidanyl-2-pentyl-oxolan-3-yl]amino]-1H-purin-9-yl]oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HN0 "Create component" 2011-08-15 RCSB HN0 "Other modification" 2011-09-08 RCSB #