data_HNI # _chem_comp.id HNI _chem_comp.name "PROTOPORPHYRIN IX CONTAINING NI(II)" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H32 N4 Ni O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag Y _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 619.336 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HNI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 1NIH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HNI NI NI NI 0 0 N N N 25.744 6.813 27.527 ? ? ? NI HNI 1 HNI CHA CHA C 0 1 N N N 25.944 6.735 30.849 ? ? ? CHA HNI 2 HNI CHB CHB C 0 1 N N N 28.071 4.507 27.248 ? ? ? CHB HNI 3 HNI CHC CHC C 0 1 N N N 25.171 6.678 24.209 ? ? ? CHC HNI 4 HNI CHD CHD C 0 1 N N N 23.778 9.697 27.663 ? ? ? CHD HNI 5 HNI NA "N A" N 0 1 N N N 26.761 5.888 28.741 ? ? ? NA HNI 6 HNI C1A C1A C 0 1 N N N 26.775 5.912 30.133 ? ? ? C1A HNI 7 HNI C2A C2A C 0 1 N N N 27.811 5.093 30.708 ? ? ? C2A HNI 8 HNI C3A C3A C 0 1 N N N 28.412 4.468 29.669 ? ? ? C3A HNI 9 HNI C4A C4A C 0 1 N N N 27.728 4.942 28.483 ? ? ? C4A HNI 10 HNI CMA CMA C 0 1 N N N 29.579 3.516 29.670 ? ? ? CMA HNI 11 HNI CAA CAA C 0 1 N N N 28.183 5.127 32.150 ? ? ? CAA HNI 12 HNI CBA CBA C 0 1 N N N 27.826 3.880 32.865 ? ? ? CBA HNI 13 HNI CGA CGA C 0 1 N N N 27.729 4.249 34.329 ? ? ? CGA HNI 14 HNI O1A O1A O 0 1 N N N 27.935 5.412 34.718 ? ? ? O1A HNI 15 HNI O2A O2A O 0 1 N N N 27.436 3.334 35.088 ? ? ? O2A HNI 16 HNI NB "N B" N 0 1 N N S 26.435 5.806 26.055 ? ? ? NB HNI 17 HNI C1B C1B C 0 1 N N N 27.405 4.870 26.130 ? ? ? C1B HNI 18 HNI C2B C2B C 0 1 N N N 27.641 4.211 24.883 ? ? ? C2B HNI 19 HNI C3B C3B C 0 1 N N N 26.824 4.802 23.968 ? ? ? C3B HNI 20 HNI C4B C4B C 0 1 N N N 26.111 5.818 24.739 ? ? ? C4B HNI 21 HNI CMB CMB C 0 1 N N N 28.617 3.082 24.746 ? ? ? CMB HNI 22 HNI CAB CAB C 0 1 N N N 26.368 4.227 22.646 ? ? ? CAB HNI 23 HNI CBB CBB C 0 1 N N N 27.285 3.988 21.593 ? ? ? CBB HNI 24 HNI NC "N C" N 0 1 N N N 24.703 7.989 26.236 ? ? ? NC HNI 25 HNI C1C C1C C 0 1 N N N 24.592 7.747 24.897 ? ? ? C1C HNI 26 HNI C2C C2C C 0 1 N N N 23.878 8.799 24.219 ? ? ? C2C HNI 27 HNI C3C C3C C 0 1 N N N 23.465 9.677 25.182 ? ? ? C3C HNI 28 HNI C4C C4C C 0 1 N N N 23.957 9.138 26.428 ? ? ? C4C HNI 29 HNI CMC CMC C 0 1 N N N 23.531 8.654 22.764 ? ? ? CMC HNI 30 HNI CAC CAC C 0 1 N N N 22.660 10.924 25.060 ? ? ? CAC HNI 31 HNI CBC CBC C 0 1 N N N 22.847 11.770 23.976 ? ? ? CBC HNI 32 HNI ND "N D" N 0 1 Y N N 25.063 7.926 28.815 ? ? ? ND HNI 33 HNI C1D C1D C 0 1 Y N N 24.268 9.103 28.794 ? ? ? C1D HNI 34 HNI C2D C2D C 0 1 Y N N 24.023 9.643 30.104 ? ? ? C2D HNI 35 HNI C3D C3D C 0 1 Y N N 24.611 8.807 30.973 ? ? ? C3D HNI 36 HNI C4D C4D C 0 1 Y N N 25.219 7.752 30.208 ? ? ? C4D HNI 37 HNI CMD CMD C 0 1 N N N 23.143 10.831 30.403 ? ? ? CMD HNI 38 HNI CAD CAD C 0 1 N N N 24.826 9.015 32.448 ? ? ? CAD HNI 39 HNI CBD CBD C 0 1 N N N 26.073 9.857 32.590 ? ? ? CBD HNI 40 HNI CGD CGD C 0 1 N N N 26.302 10.447 33.963 ? ? ? CGD HNI 41 HNI O1D O1D O 0 1 N N N 27.463 10.676 34.283 ? ? ? O1D HNI 42 HNI O2D O2D O 0 1 N N N 25.357 10.670 34.709 ? ? ? O2D HNI 43 HNI HHA HHA H 0 1 N N N 25.846 6.599 31.916 ? ? ? HHA HNI 44 HNI HHB HHB H 0 1 N N N 28.915 3.840 27.152 ? ? ? HHB HNI 45 HNI HHC HHC H 0 1 N N N 24.860 6.513 23.188 ? ? ? HHC HNI 46 HNI HHD HHD H 0 1 N N N 23.238 10.628 27.748 ? ? ? HHD HNI 47 HNI HMA1 HMA1 H 0 0 N N N 29.799 3.203 28.639 ? ? ? HMA1 HNI 48 HNI HMA2 HMA2 H 0 0 N N N 30.460 4.017 30.097 ? ? ? HMA2 HNI 49 HNI HMA3 HMA3 H 0 0 N N N 29.331 2.632 30.276 ? ? ? HMA3 HNI 50 HNI HAA1 HAA1 H 0 0 N N N 29.270 5.279 32.229 ? ? ? HAA1 HNI 51 HNI HAA2 HAA2 H 0 0 N N N 27.660 5.968 32.628 ? ? ? HAA2 HNI 52 HNI HBA1 HBA1 H 0 0 N N N 26.861 3.496 32.503 ? ? ? HBA1 HNI 53 HNI HBA2 HBA2 H 0 0 N N N 28.604 3.117 32.714 ? ? ? HBA2 HNI 54 HNI H2A H2A H 0 1 N N N 27.398 3.661 35.979 ? ? ? H2A HNI 55 HNI HMB1 HMB1 H 0 0 N N N 28.632 2.734 23.703 ? ? ? HMB1 HNI 56 HNI HMB2 HMB2 H 0 0 N N N 29.621 3.429 25.031 ? ? ? HMB2 HNI 57 HNI HMB3 HMB3 H 0 0 N N N 28.315 2.254 25.404 ? ? ? HMB3 HNI 58 HNI HAB HAB H 0 1 N N N 25.323 3.994 22.502 ? ? ? HAB HNI 59 HNI HBB1 HBB1 H 0 0 N N N 26.937 3.577 20.657 ? ? ? HBB1 HNI 60 HNI HBB2 HBB2 H 0 0 N N N 28.332 4.217 21.726 ? ? ? HBB2 HNI 61 HNI HMC1 HMC1 H 0 0 N N N 22.991 9.550 22.424 ? ? ? HMC1 HNI 62 HNI HMC2 HMC2 H 0 0 N N N 24.454 8.537 22.177 ? ? ? HMC2 HNI 63 HNI HMC3 HMC3 H 0 0 N N N 22.894 7.768 22.626 ? ? ? HMC3 HNI 64 HNI HAC HAC H 0 1 N N N 21.930 11.170 25.816 ? ? ? HAC HNI 65 HNI HBC1 HBC1 H 0 0 N N N 22.262 12.674 23.889 ? ? ? HBC1 HNI 66 HNI HBC2 HBC2 H 0 0 N N N 23.577 11.525 23.219 ? ? ? HBC2 HNI 67 HNI HMD1 HMD1 H 0 0 N N N 22.102 10.496 30.521 ? ? ? HMD1 HNI 68 HNI HMD2 HMD2 H 0 0 N N N 23.481 11.313 31.332 ? ? ? HMD2 HNI 69 HNI HMD3 HMD3 H 0 0 N N N 23.205 11.551 29.573 ? ? ? HMD3 HNI 70 HNI HAD1 HAD1 H 0 0 N N N 23.963 9.538 32.887 ? ? ? HAD1 HNI 71 HNI HAD2 HAD2 H 0 0 N N N 24.963 8.047 32.952 ? ? ? HAD2 HNI 72 HNI HBD1 HBD1 H 0 0 N N N 26.939 9.226 32.343 ? ? ? HBD1 HNI 73 HNI HBD2 HBD2 H 0 0 N N N 26.007 10.686 31.871 ? ? ? HBD2 HNI 74 HNI H2D H2D H 0 1 N N N 25.677 11.030 35.528 ? ? ? H2D HNI 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HNI NI NA SING N N 1 HNI NI NB SING N N 2 HNI NI NC SING N N 3 HNI NI ND SING N N 4 HNI CHA C1A DOUB N N 5 HNI CHA C4D SING N N 6 HNI CHA HHA SING N N 7 HNI CHB C4A SING N N 8 HNI CHB C1B DOUB N N 9 HNI CHB HHB SING N N 10 HNI CHC C4B DOUB N N 11 HNI CHC C1C SING N N 12 HNI CHC HHC SING N N 13 HNI CHD C4C DOUB N N 14 HNI CHD C1D SING N N 15 HNI CHD HHD SING N N 16 HNI NA C1A SING N N 17 HNI NA C4A DOUB N N 18 HNI C1A C2A SING N N 19 HNI C2A C3A DOUB N N 20 HNI C2A CAA SING N N 21 HNI C3A C4A SING N N 22 HNI C3A CMA SING N N 23 HNI CMA HMA1 SING N N 24 HNI CMA HMA2 SING N N 25 HNI CMA HMA3 SING N N 26 HNI CAA CBA SING N N 27 HNI CAA HAA1 SING N N 28 HNI CAA HAA2 SING N N 29 HNI CBA CGA SING N N 30 HNI CBA HBA1 SING N N 31 HNI CBA HBA2 SING N N 32 HNI CGA O1A DOUB N N 33 HNI CGA O2A SING N N 34 HNI O2A H2A SING N N 35 HNI NB C1B SING N N 36 HNI NB C4B SING N N 37 HNI C1B C2B SING N N 38 HNI C2B C3B DOUB N N 39 HNI C2B CMB SING N N 40 HNI C3B C4B SING N N 41 HNI C3B CAB SING N N 42 HNI CMB HMB1 SING N N 43 HNI CMB HMB2 SING N N 44 HNI CMB HMB3 SING N N 45 HNI CAB CBB DOUB N N 46 HNI CAB HAB SING N N 47 HNI CBB HBB1 SING N N 48 HNI CBB HBB2 SING N N 49 HNI NC C1C DOUB N N 50 HNI NC C4C SING N N 51 HNI C1C C2C SING N N 52 HNI C2C C3C DOUB N N 53 HNI C2C CMC SING N N 54 HNI C3C C4C SING N N 55 HNI C3C CAC SING N N 56 HNI CMC HMC1 SING N N 57 HNI CMC HMC2 SING N N 58 HNI CMC HMC3 SING N N 59 HNI CAC CBC DOUB N N 60 HNI CAC HAC SING N N 61 HNI CBC HBC1 SING N N 62 HNI CBC HBC2 SING N N 63 HNI ND C1D SING Y N 64 HNI ND C4D SING Y N 65 HNI C1D C2D DOUB Y N 66 HNI C2D C3D SING Y N 67 HNI C2D CMD SING N N 68 HNI C3D C4D DOUB Y N 69 HNI C3D CAD SING N N 70 HNI CMD HMD1 SING N N 71 HNI CMD HMD2 SING N N 72 HNI CMD HMD3 SING N N 73 HNI CAD CBD SING N N 74 HNI CAD HAD1 SING N N 75 HNI CAD HAD2 SING N N 76 HNI CBD CGD SING N N 77 HNI CBD HBD1 SING N N 78 HNI CBD HBD2 SING N N 79 HNI CGD O1D DOUB N N 80 HNI CGD O2D SING N N 81 HNI O2D H2D SING N N 82 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HNI InChI InChI 1.06 "InChI=1S/C34H34N4O4.Ni/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,1-2,9-12H2,3-6H3,(H4,35,36,37,38,39,40,41,42);/q;+2/p-2/b25-13-,26-13-,27-14-,28-15-,29-14-,30-15-,31-16-,32-16-;" HNI InChIKey InChI 1.06 IJROJBFZULUEEG-RGGAHWMASA-L HNI SMILES_CANONICAL CACTVS 3.385 "CC1=C(CCC(O)=O)C2=Cc3n4[Ni][N@]5C(=CC1=N2)C(=C(C=C)C5=CC6=NC(=Cc4c(C)c3CCC(O)=O)C(=C6C)C=C)C" HNI SMILES CACTVS 3.385 "CC1=C(CCC(O)=O)C2=Cc3n4[Ni][N]5C(=CC1=N2)C(=C(C=C)C5=CC6=NC(=Cc4c(C)c3CCC(O)=O)C(=C6C)C=C)C" HNI SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Ni]36[N]7=C(C=C8N6C(=C5)C(=C8C=C)C)C(=C(C7=C2)C=C)C)C)CCC(=O)O" HNI SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c2n3c(c1CCC(=O)O)C=C4C(=C(C5=[N]4[Ni]36[N]7=C(C=C8N6C(=C5)C(=C8C=C)C)C(=C(C7=C2)C=C)C)C)CCC(=O)O" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HNI "Create component" 1999-07-08 RCSB HNI "Modify descriptor" 2023-09-23 RCSB #