data_HO4 # _chem_comp.id HO4 _chem_comp.name "5-ethynyl-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H14 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-03-24 _chem_comp.pdbx_modified_date 2014-11-21 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 290.275 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HO4 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4O1L _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HO4 C11 C11 C 0 1 N N N 16.210 22.557 14.003 -3.298 -3.540 0.967 C11 HO4 1 HO4 C10 C10 C 0 1 N N N 16.605 21.684 14.554 -2.678 -2.591 0.661 C10 HO4 2 HO4 C7 C7 C 0 1 Y N N 17.114 20.655 15.104 -1.923 -1.433 0.289 C7 HO4 3 HO4 C8 C8 C 0 1 Y N N 18.451 20.616 15.138 -0.571 -1.341 0.191 C8 HO4 4 HO4 C5 C5 C 0 1 Y N N 16.563 19.618 15.773 -2.457 -0.111 -0.069 C5 HO4 5 HO4 C6 C6 C 0 1 Y N N 15.292 19.174 16.076 -3.738 0.447 -0.168 C6 HO4 6 HO4 N6 N6 N 0 1 N N N 14.226 19.861 15.654 -4.864 -0.309 0.107 N6 HO4 7 HO4 N1 N1 N 0 1 Y N N 15.102 18.066 16.781 -3.845 1.722 -0.532 N1 HO4 8 HO4 C2 C2 C 0 1 Y N N 16.217 17.335 17.199 -2.772 2.446 -0.795 C2 HO4 9 HO4 N3 N3 N 0 1 Y N N 17.487 17.770 16.841 -1.552 1.962 -0.715 N3 HO4 10 HO4 C4 C4 C 0 1 Y N N 17.640 18.901 16.182 -1.343 0.696 -0.357 C4 HO4 11 HO4 N9 N9 N 0 1 Y N N 18.774 19.508 15.786 -0.224 -0.075 -0.192 N9 HO4 12 HO4 "C1'" "C1'" C 0 1 N N R 20.119 18.973 16.050 1.150 0.390 -0.398 "C1'" HO4 13 HO4 "O4'" "O4'" O 0 1 N N N 20.875 19.888 16.759 2.020 -0.726 -0.688 "O4'" HO4 14 HO4 "C4'" "C4'" C 0 1 N N R 22.268 19.405 16.598 3.352 -0.259 -0.383 "C4'" HO4 15 HO4 "C5'" "C5'" C 0 1 N N N 23.253 20.509 16.736 4.292 -1.443 -0.150 "C5'" HO4 16 HO4 "O5'" "O5'" O 0 1 N N N 23.418 20.638 18.118 4.458 -2.167 -1.372 "O5'" HO4 17 HO4 "C3'" "C3'" C 0 1 N N S 22.327 18.892 15.177 3.194 0.565 0.914 "C3'" HO4 18 HO4 "O3'" "O3'" O 0 1 N N N 22.933 17.600 15.198 4.053 1.707 0.890 "O3'" HO4 19 HO4 "C2'" "C2'" C 0 1 N N R 20.871 18.814 14.756 1.712 1.002 0.904 "C2'" HO4 20 HO4 "O2'" "O2'" O 0 1 N N N 20.610 17.511 14.220 1.610 2.427 0.873 "O2'" HO4 21 HO4 H1 H1 H 0 1 N N N 15.831 23.394 13.475 -3.852 -4.389 1.240 H1 HO4 22 HO4 H2 H2 H 0 1 N N N 19.131 21.344 14.720 0.124 -2.145 0.385 H2 HO4 23 HO4 H3 H3 H 0 1 N N N 13.391 19.401 15.956 -4.772 -1.237 0.372 H3 HO4 24 HO4 H4 H4 H 0 1 N N N 14.253 20.785 16.034 -5.745 0.090 0.035 H4 HO4 25 HO4 H5 H5 H 0 1 N N N 16.093 16.442 17.794 -2.903 3.477 -1.088 H5 HO4 26 HO4 H6 H6 H 0 1 N N N 20.054 18.005 16.569 1.186 1.119 -1.208 H6 HO4 27 HO4 H7 H7 H 0 1 N N N 22.487 18.594 17.309 3.728 0.370 -1.190 H7 HO4 28 HO4 H8 H8 H 0 1 N N N 24.205 20.248 16.250 5.261 -1.077 0.190 H8 HO4 29 HO4 H9 H9 H 0 1 N N N 22.862 21.440 16.299 3.866 -2.102 0.607 H9 HO4 30 HO4 H10 H10 H 0 1 N N N 24.041 21.332 18.300 5.043 -2.933 -1.298 H10 HO4 31 HO4 H11 H11 H 0 1 N N N 22.878 19.594 14.534 3.407 -0.052 1.787 H11 HO4 32 HO4 H12 H12 H 0 1 N N N 23.841 17.680 15.464 4.994 1.491 0.835 H12 HO4 33 HO4 H13 H13 H 0 1 N N N 20.620 19.617 14.047 1.189 0.599 1.772 H13 HO4 34 HO4 H14 H14 H 0 1 N N N 19.700 17.454 13.954 2.003 2.866 1.640 H14 HO4 35 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HO4 C11 C10 TRIP N N 1 HO4 "O2'" "C2'" SING N N 2 HO4 C10 C7 SING N N 3 HO4 "C2'" "C3'" SING N N 4 HO4 "C2'" "C1'" SING N N 5 HO4 C7 C8 DOUB Y N 6 HO4 C7 C5 SING Y N 7 HO4 C8 N9 SING Y N 8 HO4 "C3'" "O3'" SING N N 9 HO4 "C3'" "C4'" SING N N 10 HO4 N6 C6 SING N N 11 HO4 C5 C6 SING Y N 12 HO4 C5 C4 DOUB Y N 13 HO4 N9 "C1'" SING N N 14 HO4 N9 C4 SING Y N 15 HO4 "C1'" "O4'" SING N N 16 HO4 C6 N1 DOUB Y N 17 HO4 C4 N3 SING Y N 18 HO4 "C4'" "C5'" SING N N 19 HO4 "C4'" "O4'" SING N N 20 HO4 "C5'" "O5'" SING N N 21 HO4 N1 C2 SING Y N 22 HO4 N3 C2 DOUB Y N 23 HO4 C11 H1 SING N N 24 HO4 C8 H2 SING N N 25 HO4 N6 H3 SING N N 26 HO4 N6 H4 SING N N 27 HO4 C2 H5 SING N N 28 HO4 "C1'" H6 SING N N 29 HO4 "C4'" H7 SING N N 30 HO4 "C5'" H8 SING N N 31 HO4 "C5'" H9 SING N N 32 HO4 "O5'" H10 SING N N 33 HO4 "C3'" H11 SING N N 34 HO4 "O3'" H12 SING N N 35 HO4 "C2'" H13 SING N N 36 HO4 "O2'" H14 SING N N 37 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HO4 SMILES ACDLabs 12.01 "C#Cc2c1c(ncnc1n(c2)C3OC(C(O)C3O)CO)N" HO4 InChI InChI 1.03 "InChI=1S/C13H14N4O4/c1-2-6-3-17(12-8(6)11(14)15-5-16-12)13-10(20)9(19)7(4-18)21-13/h1,3,5,7,9-10,13,18-20H,4H2,(H2,14,15,16)/t7-,9-,10-,13-/m1/s1" HO4 InChIKey InChI 1.03 ANCWCJFYCNNXDR-QYVSTXNMSA-N HO4 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cc(C#C)c12)[C@@H]3O[C@H](CO)[C@@H](O)[C@H]3O" HO4 SMILES CACTVS 3.385 "Nc1ncnc2n(cc(C#C)c12)[CH]3O[CH](CO)[CH](O)[CH]3O" HO4 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "C#Cc1cn(c2c1c(ncn2)N)[C@H]3[C@@H]([C@@H]([C@H](O3)CO)O)O" HO4 SMILES "OpenEye OEToolkits" 1.7.6 "C#Cc1cn(c2c1c(ncn2)N)C3C(C(C(O3)CO)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HO4 "SYSTEMATIC NAME" ACDLabs 12.01 "5-ethynyl-7-(beta-D-ribofuranosyl)-7H-pyrrolo[2,3-d]pyrimidin-4-amine" HO4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(2R,3R,4S,5R)-2-(4-azanyl-5-ethynyl-pyrrolo[2,3-d]pyrimidin-7-yl)-5-(hydroxymethyl)oxolane-3,4-diol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HO4 "Create component" 2014-03-24 PDBJ HO4 "Initial release" 2014-11-26 RCSB #