data_HOE # _chem_comp.id HOE _chem_comp.name "2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAD _chem_comp.formula "C25 H25 N6 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "HOECHST 33258" _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 425.506 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HOE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HOE C1 C1 C 0 1 Y N N 9.671 21.039 11.978 -8.518 1.710 0.002 C1 HOE 1 HOE C2 C2 C 0 1 Y N N 9.641 21.789 10.802 -7.195 1.385 -0.200 C2 HOE 2 HOE C3 C3 C 0 1 Y N N 8.459 22.265 10.229 -6.709 0.147 0.225 C3 HOE 3 HOE C4 C4 C 0 1 Y N N 7.249 21.974 10.867 -7.566 -0.753 0.863 C4 HOE 4 HOE C5 C5 C 0 1 Y N N 7.273 21.212 12.056 -8.887 -0.418 1.066 C5 HOE 5 HOE C6 C6 C 0 1 Y N N 8.479 20.734 12.618 -9.367 0.812 0.636 C6 HOE 6 HOE C7 C7 C 0 1 Y N N 8.535 23.010 9.033 -5.292 -0.208 0.007 C7 HOE 7 HOE C8 C8 C 0 1 Y N N 9.411 23.960 7.213 -3.089 -0.066 -0.146 C8 HOE 8 HOE C9 C9 C 0 1 Y N N 10.168 24.326 6.084 -1.741 0.249 -0.173 C9 HOE 9 HOE C10 C10 C 0 1 Y N N 9.643 25.233 5.152 -0.812 -0.728 -0.524 C10 HOE 10 HOE C11 C11 C 0 1 Y N N 8.339 25.675 5.324 -1.240 -2.025 -0.838 C11 HOE 11 HOE C12 C12 C 0 1 Y N N 7.578 25.212 6.397 -2.565 -2.343 -0.809 C12 HOE 12 HOE C13 C13 C 0 1 Y N N 8.137 24.387 7.370 -3.513 -1.371 -0.463 C13 HOE 13 HOE C14 C14 C 0 1 Y N N 10.365 25.717 4.046 0.627 -0.398 -0.560 C14 HOE 14 HOE C15 C15 C 0 1 Y N N 11.917 25.869 2.459 2.825 -0.546 -0.328 C15 HOE 15 HOE C16 C16 C 0 1 Y N N 12.892 25.583 1.493 4.157 -0.857 -0.095 C16 HOE 16 HOE C17 C17 C 0 1 Y N N 13.049 26.361 0.331 5.142 0.063 -0.416 C17 HOE 17 HOE C18 C18 C 0 1 Y N N 12.098 27.379 0.193 4.800 1.291 -0.980 C18 HOE 18 HOE C19 C19 C 0 1 Y N N 11.076 27.611 1.120 3.494 1.607 -1.219 C19 HOE 19 HOE C20 C20 C 0 1 Y N N 11.026 26.870 2.294 2.484 0.694 -0.897 C20 HOE 20 HOE C21 C21 C 0 1 N N N 13.604 26.309 -2.039 6.646 -0.335 1.277 C21 HOE 21 HOE C22 C22 C 0 1 N N N 14.813 26.216 -2.933 8.116 -0.583 1.618 C22 HOE 22 HOE C23 C23 C 0 1 N N N 16.021 24.926 -1.464 8.748 0.685 -0.316 C23 HOE 23 HOE C24 C24 C 0 1 N N N 14.931 24.995 -0.446 7.268 0.914 -0.626 C24 HOE 24 HOE C25 C25 C 0 1 N N N 16.805 25.149 -3.702 10.344 0.289 1.432 C25 HOE 25 HOE N1 N1 N 0 1 Y N N 9.648 23.086 8.212 -4.234 0.650 0.147 N1 HOE 26 HOE N2 N2 N 0 1 Y N N 7.593 23.753 8.485 -4.857 -1.392 -0.352 N2 HOE 27 HOE N3 N3 N 0 1 Y N N 11.516 25.153 3.533 1.635 -1.218 -0.124 N3 HOE 28 HOE N4 N4 N 0 1 Y N N 10.076 26.772 3.304 1.133 0.723 -1.013 N4 HOE 29 HOE N5 N5 N 0 1 N N N 13.968 26.081 -0.642 6.485 -0.244 -0.179 N5 HOE 30 HOE N6 N6 N 1 1 N N N 15.623 25.003 -2.858 8.927 0.543 1.135 N6 HOE 31 HOE O1 O1 O 0 1 N N N 8.528 19.940 13.765 -10.670 1.138 0.837 O1 HOE 32 HOE H1 H1 H 0 1 N N N 10.629 20.690 12.398 -8.896 2.666 -0.331 H1 HOE 33 HOE H2 H2 H 0 1 N N N 10.597 22.016 10.301 -6.535 2.084 -0.693 H2 HOE 34 HOE H4 H4 H 0 1 N N N 6.297 22.337 10.442 -7.193 -1.710 1.197 H4 HOE 35 HOE H5 H5 H 0 1 N N N 6.319 20.983 12.561 -9.550 -1.114 1.559 H5 HOE 36 HOE H9 H9 H 0 1 N N N 11.174 23.901 5.929 -1.412 1.248 0.075 H9 HOE 37 HOE H11 H11 H 0 1 N N N 7.907 26.394 4.607 -0.514 -2.778 -1.106 H11 HOE 38 HOE H12 H12 H 0 1 N N N 6.517 25.502 6.477 -2.884 -3.345 -1.053 H12 HOE 39 HOE H16 H16 H 0 1 N N N 13.557 24.717 1.652 4.424 -1.810 0.337 H16 HOE 40 HOE H18 H18 H 0 1 N N N 12.157 28.033 -0.693 5.576 1.999 -1.230 H18 HOE 41 HOE H19 H19 H 0 1 N N N 10.308 28.379 0.925 3.240 2.561 -1.656 H19 HOE 42 HOE H211 1H21 H 0 0 N N N 13.067 27.277 -2.171 6.320 0.598 1.737 H211 HOE 43 HOE H212 2H21 H 0 0 N N N 12.792 25.619 -2.370 6.041 -1.157 1.659 H212 HOE 44 HOE H221 1H22 H 0 0 N N N 14.501 26.384 -3.990 8.450 -1.503 1.138 H221 HOE 45 HOE H222 2H22 H 0 0 N N N 15.465 27.104 -2.761 8.228 -0.675 2.699 H222 HOE 46 HOE H231 1H23 H 0 0 N N N 16.781 25.712 -1.249 9.330 1.535 -0.673 H231 HOE 47 HOE H232 2H23 H 0 0 N N N 16.626 24.004 -1.299 9.088 -0.223 -0.815 H232 HOE 48 HOE H241 1H24 H 0 0 N N N 14.400 24.016 -0.383 6.922 1.808 -0.107 H241 HOE 49 HOE H242 2H24 H 0 0 N N N 15.365 25.046 0.579 7.138 1.046 -1.701 H242 HOE 50 HOE H251 1H25 H 0 0 N N N 17.423 24.223 -3.644 10.945 1.124 1.072 H251 HOE 51 HOE H252 2H25 H 0 0 N N N 16.541 25.413 -4.752 10.476 0.183 2.508 H252 HOE 52 HOE H253 3H25 H 0 0 N N N 17.391 26.062 -3.448 10.661 -0.627 0.934 H253 HOE 53 HOE HN1 HN1 H 0 1 N N N 10.520 22.570 8.327 -4.280 1.585 0.405 HN1 HOE 54 HOE HN3 HN3 H 0 1 N N N 11.998 24.329 3.893 1.532 -2.105 0.256 HN3 HOE 55 HOE HN6 HN6 H 0 1 N N N 15.121 24.171 -3.171 8.634 1.391 1.595 HN6 HOE 56 HOE HO1 HO1 H 0 1 N N N 7.711 19.731 14.203 -10.719 1.577 1.697 HO1 HOE 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HOE C1 C2 DOUB Y N 1 HOE C1 C6 SING Y N 2 HOE C1 H1 SING N N 3 HOE C2 C3 SING Y N 4 HOE C2 H2 SING N N 5 HOE C3 C4 DOUB Y N 6 HOE C3 C7 SING Y N 7 HOE C4 C5 SING Y N 8 HOE C4 H4 SING N N 9 HOE C5 C6 DOUB Y N 10 HOE C5 H5 SING N N 11 HOE C6 O1 SING N N 12 HOE C7 N1 SING Y N 13 HOE C7 N2 DOUB Y N 14 HOE C8 C9 DOUB Y N 15 HOE C8 C13 SING Y N 16 HOE C8 N1 SING Y N 17 HOE C9 C10 SING Y N 18 HOE C9 H9 SING N N 19 HOE C10 C11 DOUB Y N 20 HOE C10 C14 SING Y N 21 HOE C11 C12 SING Y N 22 HOE C11 H11 SING N N 23 HOE C12 C13 DOUB Y N 24 HOE C12 H12 SING N N 25 HOE C13 N2 SING Y N 26 HOE C14 N3 SING Y N 27 HOE C14 N4 DOUB Y N 28 HOE C15 C16 DOUB Y N 29 HOE C15 C20 SING Y N 30 HOE C15 N3 SING Y N 31 HOE C16 C17 SING Y N 32 HOE C16 H16 SING N N 33 HOE C17 C18 DOUB Y N 34 HOE C17 N5 SING N N 35 HOE C18 C19 SING Y N 36 HOE C18 H18 SING N N 37 HOE C19 C20 DOUB Y N 38 HOE C19 H19 SING N N 39 HOE C20 N4 SING Y N 40 HOE C21 C22 SING N N 41 HOE C21 N5 SING N N 42 HOE C21 H211 SING N N 43 HOE C21 H212 SING N N 44 HOE C22 N6 SING N N 45 HOE C22 H221 SING N N 46 HOE C22 H222 SING N N 47 HOE C23 C24 SING N N 48 HOE C23 N6 SING N N 49 HOE C23 H231 SING N N 50 HOE C23 H232 SING N N 51 HOE C24 N5 SING N N 52 HOE C24 H241 SING N N 53 HOE C24 H242 SING N N 54 HOE C25 N6 SING N N 55 HOE C25 H251 SING N N 56 HOE C25 H252 SING N N 57 HOE C25 H253 SING N N 58 HOE N1 HN1 SING N N 59 HOE N3 HN3 SING N N 60 HOE N6 HN6 SING N N 61 HOE O1 HO1 SING N N 62 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HOE SMILES ACDLabs 10.04 "Oc1ccc(cc1)c3nc2ccc(cc2n3)c6nc4c(cc(cc4)N5CC[NH+](CC5)C)n6" HOE SMILES_CANONICAL CACTVS 3.341 "C[NH+]1CCN(CC1)c2ccc3nc([nH]c3c2)c4ccc5nc([nH]c5c4)c6ccc(O)cc6" HOE SMILES CACTVS 3.341 "C[NH+]1CCN(CC1)c2ccc3nc([nH]c3c2)c4ccc5nc([nH]c5c4)c6ccc(O)cc6" HOE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[NH+]1CCN(CC1)c2ccc3c(c2)[nH]c(n3)c4ccc5c(c4)[nH]c(n5)c6ccc(cc6)O" HOE SMILES "OpenEye OEToolkits" 1.5.0 "C[NH+]1CCN(CC1)c2ccc3c(c2)[nH]c(n3)c4ccc5c(c4)[nH]c(n5)c6ccc(cc6)O" HOE InChI InChI 1.03 "InChI=1S/C25H24N6O/c1-30-10-12-31(13-11-30)18-5-9-21-23(15-18)29-25(27-21)17-4-8-20-22(14-17)28-24(26-20)16-2-6-19(32)7-3-16/h2-9,14-15,32H,10-13H2,1H3,(H,26,28)(H,27,29)/p+1" HOE InChIKey InChI 1.03 INAAIJLSXJJHOZ-UHFFFAOYSA-O # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HOE "SYSTEMATIC NAME" ACDLabs 10.04 "4-[2'-(4-hydroxyphenyl)-1H,3'H-2,5'-bibenzimidazol-6-yl]-1-methylpiperazin-1-ium" HOE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "4-[6-[6-(4-methylpiperazin-4-ium-1-yl)-1H-benzimidazol-2-yl]-1H-benzimidazol-2-yl]phenol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HOE "Create component" 1999-07-08 RCSB HOE "Modify aromatic_flag" 2011-06-04 RCSB HOE "Modify descriptor" 2011-06-04 RCSB HOE "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id HOE _pdbx_chem_comp_synonyms.name "HOECHST 33258" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##