data_HP9 # _chem_comp.id HP9 _chem_comp.name "(2S)-2-azanyl-3-(7-fluoranyl-9-oxidanylidene-xanthen-2-yl)propanoic acid" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C16 H12 F N O4" _chem_comp.mon_nstd_parent_comp_id PHE _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-01-26 _chem_comp.pdbx_modified_date 2023-11-03 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces PHE _chem_comp.formula_weight 301.269 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HP9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7DZE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HP9 CA C1 C 0 1 N N S Y N N -3.891 -10.818 -28.803 -4.171 -0.130 0.418 C21 HP9 1 HP9 CG C2 C 0 1 Y N N N N N -4.008 -9.677 -26.501 -1.997 0.587 -0.535 C24 HP9 2 HP9 CE1 C3 C 0 1 Y N N N N N -4.536 -7.480 -25.656 -0.421 2.320 0.005 C26 HP9 3 HP9 CE2 C4 C 0 1 Y N N N N N -2.812 -8.799 -24.622 0.296 0.026 -0.131 C28 HP9 4 HP9 C C5 C 0 1 N N N Y N Y -4.592 -9.733 -29.594 -5.613 -0.424 0.091 C12 HP9 5 HP9 CB C6 C 0 1 N N N N N N -4.389 -10.854 -27.366 -3.407 0.174 -0.872 C23 HP9 6 HP9 CD1 C7 C 0 1 Y N N N N N -4.790 -8.527 -26.537 -1.702 1.924 -0.313 C25 HP9 7 HP9 CZ C8 C 0 1 Y N N N N N -3.598 -7.654 -24.653 0.597 1.377 0.106 C27 HP9 8 HP9 CD2 C9 C 0 1 Y N N N N N -3.019 -9.825 -25.529 -1.005 -0.365 -0.443 C29 HP9 9 HP9 C10 C10 C 0 1 Y N N N N N -0.749 -6.829 -20.643 5.136 -0.684 -0.093 C10 HP9 10 HP9 C11 C11 C 0 1 Y N N N N N -0.804 -7.884 -21.538 3.871 -1.234 -0.144 C11 HP9 11 HP9 C3 C12 C 0 1 N N N N N N -1.836 -8.955 -23.524 1.387 -0.966 -0.029 C3 HP9 12 HP9 C6 C13 C 0 1 Y N N N N N -1.687 -7.816 -22.601 2.758 -0.413 0.026 C6 HP9 13 HP9 C7 C14 C 0 1 Y N N N N N -2.531 -6.733 -22.722 2.914 0.963 0.253 C7 HP9 14 HP9 C8 C15 C 0 1 Y N N N N N -2.542 -5.723 -21.765 4.199 1.497 0.299 C8 HP9 15 HP9 C9 C16 C 0 1 Y N N N N N -1.624 -5.752 -20.733 5.294 0.679 0.127 C9 HP9 16 HP9 F14 F1 F 0 1 N N N N N N 0.095 -6.914 -19.608 6.222 -1.471 -0.256 F14 HP9 17 HP9 N N1 N 0 1 N N N Y Y N -2.434 -10.589 -28.846 -3.572 -1.296 1.079 N5 HP9 18 HP9 O12 O1 O 0 1 N N N N N N -3.417 -6.639 -23.753 1.845 1.765 0.434 O12 HP9 19 HP9 O13 O2 O 0 1 N N N N N N -1.032 -9.908 -23.485 1.171 -2.163 0.007 O13 HP9 20 HP9 O O3 O 0 1 N N N Y N Y -4.073 -8.662 -29.822 -5.998 -1.567 0.035 O14 HP9 21 HP9 HA H1 H 0 1 N N N Y N N -4.114 -11.788 -29.271 -4.118 0.732 1.084 H1 HP9 22 HP9 HE1 H2 H 0 1 N N N N N N -5.064 -6.543 -25.754 -0.207 3.365 0.179 H2 HP9 23 HP9 OXT O4 O 0 1 N Y N Y N Y -5.544 -9.912 -29.951 -6.468 0.585 -0.139 O1 HP9 24 HP9 HB2 H4 H 0 1 N N N N N N -5.487 -10.910 -27.392 -3.384 -0.717 -1.499 H4 HP9 25 HP9 HB3 H5 H 0 1 N N N N N N -3.987 -11.762 -26.894 -3.905 0.983 -1.407 H5 HP9 26 HP9 HD1 H6 H 0 1 N N N N N N -5.597 -8.446 -27.251 -2.486 2.663 -0.389 H6 HP9 27 HP9 HD2 H7 H 0 1 N N N N N N -2.424 -10.725 -25.484 -1.233 -1.407 -0.612 H7 HP9 28 HP9 H8 H8 H 0 1 N N N N N N -0.167 -8.747 -21.408 3.746 -2.293 -0.315 H8 HP9 29 HP9 H9 H9 H 0 1 N N N N N N -3.263 -4.922 -21.829 4.337 2.554 0.468 H9 HP9 30 HP9 H10 H10 H 0 1 N N N N N N -1.587 -4.952 -20.009 6.287 1.102 0.163 H10 HP9 31 HP9 H H11 H 0 1 N N N Y Y N -1.968 -11.304 -28.325 -3.609 -2.109 0.482 H11 HP9 32 HP9 H2 H12 H 0 1 N Y N Y Y N -2.121 -10.612 -29.795 -2.624 -1.102 1.367 H12 HP9 33 HP9 HXT H13 H 0 1 N Y N Y N Y -5.854 -9.149 -30.424 -7.382 0.347 -0.345 H3 HP9 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HP9 O C DOUB N N 1 HP9 C CA SING N N 2 HP9 N CA SING N N 3 HP9 CA CB SING N N 4 HP9 CB CG SING N N 5 HP9 CD1 CG DOUB Y N 6 HP9 CD1 CE1 SING Y N 7 HP9 CG CD2 SING Y N 8 HP9 CE1 CZ DOUB Y N 9 HP9 CD2 CE2 DOUB Y N 10 HP9 CZ CE2 SING Y N 11 HP9 CZ O12 SING N N 12 HP9 CE2 C3 SING N N 13 HP9 O12 C7 SING N N 14 HP9 C3 O13 DOUB N N 15 HP9 C3 C6 SING N N 16 HP9 C7 C6 DOUB Y N 17 HP9 C7 C8 SING Y N 18 HP9 C6 C11 SING Y N 19 HP9 C8 C9 DOUB Y N 20 HP9 C11 C10 DOUB Y N 21 HP9 C9 C10 SING Y N 22 HP9 C10 F14 SING N N 23 HP9 CA HA SING N N 24 HP9 CE1 HE1 SING N N 25 HP9 C OXT SING N N 26 HP9 CB HB2 SING N N 27 HP9 CB HB3 SING N N 28 HP9 CD1 HD1 SING N N 29 HP9 CD2 HD2 SING N N 30 HP9 C11 H8 SING N N 31 HP9 C8 H9 SING N N 32 HP9 C9 H10 SING N N 33 HP9 N H SING N N 34 HP9 N H2 SING N N 35 HP9 OXT HXT SING N N 36 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HP9 InChI InChI 1.03 "InChI=1S/C16H12FNO4/c17-9-2-4-14-11(7-9)15(19)10-5-8(1-3-13(10)22-14)6-12(18)16(20)21/h1-5,7,12H,6,18H2,(H,20,21)/t12-/m0/s1" HP9 InChIKey InChI 1.03 BHLMSYCQBMXWKV-LBPRGKRZSA-N HP9 SMILES_CANONICAL CACTVS 3.385 "N[C@@H](Cc1ccc2Oc3ccc(F)cc3C(=O)c2c1)C(O)=O" HP9 SMILES CACTVS 3.385 "N[CH](Cc1ccc2Oc3ccc(F)cc3C(=O)c2c1)C(O)=O" HP9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1C[C@@H](C(=O)O)N)C(=O)c3cc(ccc3O2)F" HP9 SMILES "OpenEye OEToolkits" 2.0.7 "c1cc2c(cc1CC(C(=O)O)N)C(=O)c3cc(ccc3O2)F" # _pdbx_chem_comp_identifier.comp_id HP9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-3-(7-fluoranyl-9-oxidanylidene-xanthen-2-yl)propanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HP9 "Create component" 2021-01-26 PDBJ HP9 "Modify formula" 2021-02-02 PDBJ HP9 "Modify name" 2021-02-02 PDBJ HP9 "Other modification" 2021-02-02 PDBJ HP9 "Modify atom id" 2021-11-09 PDBJ HP9 "Initial release" 2022-07-27 RCSB HP9 "Modify backbone" 2023-11-03 PDBE #