data_HR7
# 
_chem_comp.id                                    HR7 
_chem_comp.name                                  "(3S)-3-amino-6-[(diaminomethylidene)amino]hexanoic acid" 
_chem_comp.type                                  "L-PEPTIDE LINKING" 
_chem_comp.pdbx_type                             ATOMP 
_chem_comp.formula                               "C7 H16 N4 O2" 
_chem_comp.mon_nstd_parent_comp_id               ARG 
_chem_comp.pdbx_synonyms                         BETA-HOMOARGININE 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2011-05-18 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        188.228 
_chem_comp.one_letter_code                       R 
_chem_comp.three_letter_code                     HR7 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        2YJ1 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  EBI 
_chem_comp.pdbx_pcm                              N 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HR7 N    N    N 0 1 N N N Y Y N 23.357 16.886 -3.291 1.494  1.038  -0.940 N    HR7 1  
HR7 CB   CB   C 0 1 N N S Y N N 22.491 17.371 -4.361 1.594  0.060  0.152  CB   HR7 2  
HR7 CG   CG   C 0 1 N N N N N N 23.222 18.518 -5.072 0.343  -0.820 0.164  CG   HR7 3  
HR7 CD   CD   C 0 1 N N N N N N 23.174 19.842 -4.311 -0.880 0.036  0.499  CD   HR7 4  
HR7 CE   CE   C 0 1 N N N N N N 22.162 19.809 -3.161 -2.131 -0.844 0.512  CE   HR7 5  
HR7 NZ   NZ   N 0 1 N N N N N N 21.220 20.937 -3.102 -3.302 -0.023 0.833  NZ   HR7 6  
HR7 CH   CH   C 0 1 N N N N N N 20.152 21.082 -3.889 -4.260 0.114  -0.040 CH   HR7 7  
HR7 NH2  NH2  N 0 1 N N N N N N 19.372 22.148 -3.737 -5.295 0.985  0.207  NH2  HR7 8  
HR7 NH1  NH1  N 0 1 N N N N N N 19.867 20.185 -4.836 -4.236 -0.611 -1.208 NH1  HR7 9  
HR7 C    C    C 0 1 N N N Y N Y 21.157 15.250 -4.970 4.072  0.033  0.050  C    HR7 10 
HR7 O    O    O 0 1 N N N Y N Y 19.966 15.549 -4.847 3.976  1.216  0.275  O    HR7 11 
HR7 CA   CA   C 0 1 N N N Y N N 22.215 16.282 -5.386 2.831  -0.816 -0.060 CA   HR7 12 
HR7 OXT  OXT  O 0 1 N Y N Y N Y 21.613 14.022 -4.748 5.283  -0.526 -0.101 OXT  HR7 13 
HR7 H    HN1  H 0 1 N N N Y Y N 22.904 16.136 -2.809 2.278  1.673  -0.930 HN1  HR7 14 
HR7 H2   HN2  H 0 1 N Y N Y Y N 24.218 16.560 -3.681 1.415  0.576  -1.833 HN2  HR7 15 
HR7 HB   HB   H 0 1 N N N Y N N 21.534 17.695 -3.926 1.679  0.585  1.103  HB   HR7 16 
HR7 HG2  HG2  H 0 0 N N N N N N 24.277 18.230 -5.189 0.209  -1.276 -0.817 HG2  HR7 17 
HR7 HG3  HG3  H 0 0 N N N N N N 22.747 18.670 -6.052 0.456  -1.602 0.915  HG3  HR7 18 
HR7 HA   HA   H 0 0 N N N Y N N 21.860 16.771 -6.305 2.857  -1.597 0.699  HA   HR7 19 
HR7 HA2  HA2  H 0 0 N N N Y N N 23.157 15.742 -5.561 2.789  -1.271 -1.049 HA2  HR7 20 
HR7 HD2  HD2  H 0 0 N N N N N N 24.172 20.044 -3.895 -0.746 0.492  1.480  HD2  HR7 21 
HR7 HD3  HD3  H 0 0 N N N N N N 22.884 20.639 -5.011 -0.993 0.818  -0.252 HD3  HR7 22 
HR7 HE2  HE2  H 0 0 N N N N N N 21.568 18.890 -3.272 -2.265 -1.299 -0.469 HE2  HR7 23 
HR7 HE3  HE3  H 0 0 N N N N N N 22.733 19.808 -2.221 -2.018 -1.625 1.263  HE3  HR7 24 
HR7 HH11 HH11 H 0 0 N N N N N N 19.071 20.317 -5.426 -3.589 -1.325 -1.322 HH11 HR7 25 
HR7 HH12 HH12 H 0 0 N N N N N N 20.450 19.381 -4.955 -4.865 -0.408 -1.918 HH12 HR7 26 
HR7 HH21 HH21 H 0 0 N N N N N N 18.577 22.274 -4.330 -5.312 1.496  1.031  HH21 HR7 27 
HR7 HH22 HH22 H 0 0 N N N N N N 19.580 22.823 -3.029 -6.008 1.087  -0.442 HH22 HR7 28 
HR7 HXT  HXT  H 0 1 N Y N Y N Y 20.893 13.457 -4.493 6.049  0.059  -0.022 HXT  HR7 29 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HR7 N   CB   SING N N 1  
HR7 CB  CG   SING N N 2  
HR7 CB  CA   SING N N 3  
HR7 CG  CD   SING N N 4  
HR7 CD  CE   SING N N 5  
HR7 CE  NZ   SING N N 6  
HR7 NZ  CH   DOUB N N 7  
HR7 CH  NH1  SING N N 8  
HR7 CH  NH2  SING N N 9  
HR7 CA  C    SING N N 10 
HR7 C   O    DOUB N N 11 
HR7 C   OXT  SING N N 12 
HR7 N   H    SING N N 13 
HR7 N   H2   SING N N 14 
HR7 CB  HB   SING N N 15 
HR7 CG  HG2  SING N N 16 
HR7 CG  HG3  SING N N 17 
HR7 CA  HA   SING N N 18 
HR7 CA  HA2  SING N N 19 
HR7 CD  HD2  SING N N 20 
HR7 CD  HD3  SING N N 21 
HR7 CE  HE2  SING N N 22 
HR7 CE  HE3  SING N N 23 
HR7 NH1 HH11 SING N N 24 
HR7 NH1 HH12 SING N N 25 
HR7 NH2 HH21 SING N N 26 
HR7 NH2 HH22 SING N N 27 
HR7 OXT HXT  SING N N 28 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HR7 SMILES           ACDLabs              12.01 "O=C(O)CC(N)CCC/N=C(\N)N"                                                             
HR7 SMILES_CANONICAL CACTVS               3.370 "N[C@@H](CCCN=C(N)N)CC(O)=O"                                                          
HR7 SMILES           CACTVS               3.370 "N[CH](CCCN=C(N)N)CC(O)=O"                                                            
HR7 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C(C[C@@H](CC(=O)O)N)CN=C(N)N"                                                        
HR7 SMILES           "OpenEye OEToolkits" 1.7.2 "C(CC(CC(=O)O)N)CN=C(N)N"                                                             
HR7 InChI            InChI                1.03  "InChI=1S/C7H16N4O2/c8-5(4-6(12)13)2-1-3-11-7(9)10/h5H,1-4,8H2,(H,12,13)(H4,9,10,11)" 
HR7 InChIKey         InChI                1.03  VNWXCGKMEWXYBP-UHFFFAOYSA-N                                                           
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HR7 "SYSTEMATIC NAME" ACDLabs              12.01 "(3S)-3-amino-6-[(diaminomethylidene)amino]hexanoic acid"    
HR7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(3S)-3-azanyl-6-[bis(azanyl)methylideneamino]hexanoic acid" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HR7 "Create component"   2011-05-18 EBI  
HR7 "Other modification" 2011-11-07 EBI  
HR7 "Other modification" 2019-04-16 PDBE 
HR7 "Modify synonyms"    2020-06-05 PDBE 
HR7 "Modify backbone"    2023-11-03 PDBE 
HR7 "Modify PCM"         2024-09-27 PDBE 
# 
_pdbx_chem_comp_synonyms.ordinal      1 
_pdbx_chem_comp_synonyms.comp_id      HR7 
_pdbx_chem_comp_synonyms.name         BETA-HOMOARGININE 
_pdbx_chem_comp_synonyms.provenance   ? 
_pdbx_chem_comp_synonyms.type         ? 
#