data_HSX
# 
_chem_comp.id                                    HSX 
_chem_comp.name                                  5-O-phosphono-alpha-D-ribofuranose 
_chem_comp.type                                  "D-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C5 H11 O8 P" 
_chem_comp.mon_nstd_parent_comp_id               RIB 
_chem_comp.pdbx_synonyms                         "5-O-phosphono-alpha-D-ribose; 5-O-phosphono-D-ribose; 5-O-phosphono-ribose" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-01-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        230.110 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HSX 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1ZN7 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 HSX 5-O-phosphono-alpha-D-ribose PDB ? 
2 HSX 5-O-phosphono-D-ribose       PDB ? 
3 HSX 5-O-phosphono-ribose         PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HSX C1   "C1'"  C 0 1 N N S N N N 16.737 0.630  -11.289 -2.673 -1.241 0.524  C1   HSX 1  
HSX O4   "O1'"  O 0 1 N N N N N N 16.493 0.087  -12.597 -1.242 -1.105 0.497  O4   HSX 2  
HSX C2   "C2'"  C 0 1 N N R N N N 16.360 -0.485 -10.319 -3.269 0.179  0.557  C2   HSX 3  
HSX O2   "O2'"  O 0 1 N N N N N N 16.979 -0.192 -9.055  -4.115 0.393  -0.575 O2   HSX 4  
HSX C3   "C3'"  C 0 1 N N S N N N 17.076 -1.635 -11.026 -2.033 1.110  0.492  C3   HSX 5  
HSX O3   "O3'"  O 0 1 N N N N N N 18.475 -1.659 -10.688 -2.278 2.224  -0.370 O3   HSX 6  
HSX C4   "C4'"  C 0 1 N N R N N N 17.003 -1.265 -12.505 -0.953 0.175  -0.107 C4   HSX 7  
HSX C5   "C5'"  C 0 1 N N N N N N 16.080 -2.205 -13.273 0.448  0.650  0.284  C5   HSX 8  
HSX O5   "O5'"  O 0 1 N N N N N N 16.231 -1.811 -14.642 1.424  -0.222 -0.290 O5   HSX 9  
HSX "P'" "P'"   P 0 1 N N N N N N 16.533 -2.835 -15.843 3.009  -0.020 -0.085 "P'" HSX 10 
HSX O1X  O1X    O 0 1 N N N N N N 15.579 -2.451 -16.897 3.391  1.346  -0.507 O1X  HSX 11 
HSX O2X  O2X    O 0 1 N N N N N N 16.209 -4.327 -15.342 3.379  -0.226 1.468  O2X  HSX 12 
HSX O3X  O3X    O 0 1 N N N N N N 18.060 -2.714 -16.331 3.806  -1.100 -0.974 O3X  HSX 13 
HSX O1   O1     O 0 1 N Y N N N N 18.124 0.927  -11.058 -3.118 -1.928 -0.648 O1   HSX 14 
HSX H1   "H1'"  H 0 1 N N N N N N 16.169 1.565  -11.171 -2.978 -1.792 1.414  H1   HSX 15 
HSX H2   "H2'"  H 0 1 N N N N N N 15.293 -0.655 -10.115 -3.822 0.340  1.482  H2   HSX 16 
HSX HO2  "HO2'" H 0 1 N Y N N N N 17.920 -0.127 -9.170  -4.875 -0.204 -0.615 HO2  HSX 17 
HSX H3   "H3'"  H 0 1 N N N N N N 16.626 -2.602 -10.758 -1.748 1.447  1.488  H3   HSX 18 
HSX HO3  "HO3'" H 0 1 N Y N N N N 18.994 -1.664 -11.484 -3.008 2.790  -0.083 HO3  HSX 19 
HSX H4   "H4'"  H 0 1 N N N N N N 18.006 -1.348 -12.948 -1.051 0.118  -1.191 H4   HSX 20 
HSX H51  "H5'"  H 0 1 N N N N N N 16.371 -3.256 -13.127 0.604  1.663  -0.086 H51  HSX 21 
HSX H52  "H5'A" H 0 1 N N N N N N 15.037 -2.137 -12.932 0.546  0.640  1.369  H52  HSX 22 
HSX HO2X HO2X   H 0 0 N N N N N N 16.145 -4.907 -16.092 3.155  -1.101 1.813  HO2X HSX 23 
HSX HO3X HO3X   H 0 0 N N N N N N 18.089 -2.690 -17.280 4.768  -1.037 -0.900 HO3X HSX 24 
HSX HO1  HO1    H 0 1 N Y N N N N 18.577 0.993  -11.890 -2.777 -2.829 -0.729 HO1  HSX 25 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HSX O4   C1   SING N N 1  
HSX C1   O1   SING N N 2  
HSX C1   C2   SING N N 3  
HSX C1   H1   SING N N 4  
HSX O4   C4   SING N N 5  
HSX C3   C2   SING N N 6  
HSX C2   O2   SING N N 7  
HSX C2   H2   SING N N 8  
HSX O2   HO2  SING N N 9  
HSX C4   C3   SING N N 10 
HSX C3   O3   SING N N 11 
HSX C3   H3   SING N N 12 
HSX O3   HO3  SING N N 13 
HSX C5   C4   SING N N 14 
HSX C4   H4   SING N N 15 
HSX O5   C5   SING N N 16 
HSX C5   H51  SING N N 17 
HSX C5   H52  SING N N 18 
HSX "P'" O5   SING N N 19 
HSX O1X  "P'" DOUB N N 20 
HSX O3X  "P'" SING N N 21 
HSX "P'" O2X  SING N N 22 
HSX O2X  HO2X SING N N 23 
HSX O3X  HO3X SING N N 24 
HSX O1   HO1  SING N N 25 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HSX SMILES           ACDLabs              10.04 "O=P(O)(O)OCC1OC(O)C(O)C1O"                                                                       
HSX SMILES_CANONICAL CACTVS               3.341 "O[C@H]1O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]1O"                                                    
HSX SMILES           CACTVS               3.341 "O[CH]1O[CH](CO[P](O)(O)=O)[CH](O)[CH]1O"                                                         
HSX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@H]([C@H](O1)O)O)O)OP(=O)(O)O"                                                  
HSX SMILES           "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(O1)O)O)O)OP(=O)(O)O"                                                                   
HSX InChI            InChI                1.03  "InChI=1S/C5H11O8P/c6-3-2(1-12-14(9,10)11)13-5(8)4(3)7/h2-8H,1H2,(H2,9,10,11)/t2-,3-,4-,5+/m1/s1" 
HSX InChIKey         InChI                1.03  KTVPXOYAKDPRHY-AIHAYLRMSA-N                                                                       
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HSX "SYSTEMATIC NAME"           ACDLabs              10.04 5-O-phosphono-alpha-D-ribofuranose                                       
HSX "SYSTEMATIC NAME"           "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5S)-3,4,5-trihydroxyoxolan-2-yl]methyl dihydrogen phosphate" 
HSX "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE             1.0   a-D-Ribf5PO3                                                             
# 
_pdbx_chem_comp_related.comp_id             HSX 
_pdbx_chem_comp_related.related_comp_id     RIB 
_pdbx_chem_comp_related.relationship_type   "Carbohydrate core" 
_pdbx_chem_comp_related.details             ? 
# 
loop_
_pdbx_chem_comp_atom_related.ordinal 
_pdbx_chem_comp_atom_related.comp_id 
_pdbx_chem_comp_atom_related.atom_id 
_pdbx_chem_comp_atom_related.related_comp_id 
_pdbx_chem_comp_atom_related.related_atom_id 
_pdbx_chem_comp_atom_related.related_type 
1  HSX C1  RIB C1  "Carbohydrate core" 
2  HSX C2  RIB C2  "Carbohydrate core" 
3  HSX C3  RIB C3  "Carbohydrate core" 
4  HSX C4  RIB C4  "Carbohydrate core" 
5  HSX C5  RIB C5  "Carbohydrate core" 
6  HSX O1  RIB O1  "Carbohydrate core" 
7  HSX O4  RIB O4  "Carbohydrate core" 
8  HSX O2  RIB O2  "Carbohydrate core" 
9  HSX O3  RIB O3  "Carbohydrate core" 
10 HSX O5  RIB O5  "Carbohydrate core" 
11 HSX H1  RIB H1  "Carbohydrate core" 
12 HSX H2  RIB H2  "Carbohydrate core" 
13 HSX H3  RIB H3  "Carbohydrate core" 
14 HSX H4  RIB H4  "Carbohydrate core" 
15 HSX H51 RIB H51 "Carbohydrate core" 
16 HSX H52 RIB H52 "Carbohydrate core" 
17 HSX HO1 RIB HO1 "Carbohydrate core" 
18 HSX HO2 RIB HO2 "Carbohydrate core" 
19 HSX HO3 RIB HO3 "Carbohydrate core" 
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
HSX "CARBOHYDRATE ISOMER"                 D        PDB ? 
HSX "CARBOHYDRATE RING"                   furanose PDB ? 
HSX "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
HSX "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HSX "Create component"         2009-01-16 RCSB 
HSX "Modify descriptor"        2011-06-04 RCSB 
HSX "Other modification"       2020-07-03 RCSB 
HSX "Modify parent residue"    2020-07-17 RCSB 
HSX "Modify synonyms"          2020-07-17 RCSB 
HSX "Modify linking type"      2020-07-17 RCSB 
HSX "Modify atom id"           2020-07-17 RCSB 
HSX "Modify component atom id" 2020-07-17 RCSB 
HSX "Modify leaving atom flag" 2020-07-17 RCSB 
HSX "Modify PCM"               2024-09-27 PDBE 
# 
_pdbx_chem_comp_pcm.pcm_id                             1 
_pdbx_chem_comp_pcm.comp_id                            HSX 
_pdbx_chem_comp_pcm.modified_residue_id                GLU 
_pdbx_chem_comp_pcm.type                               None 
_pdbx_chem_comp_pcm.category                           Carbohydrate 
_pdbx_chem_comp_pcm.position                           "Amino-acid side chain" 
_pdbx_chem_comp_pcm.polypeptide_position               "Any position" 
_pdbx_chem_comp_pcm.comp_id_linking_atom               C1 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom   OE2 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession     ? 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession      ? 
#