data_HSY # _chem_comp.id HSY _chem_comp.name alpha-L-xylopyranose _chem_comp.type "L-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H10 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpha-L-xylose; L-xylose; xylose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-01-16 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 150.130 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HSY _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1xic _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 HSY alpha-L-xylose PDB ? 2 HSY L-xylose PDB ? 3 HSY xylose PDB ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HSY C1 C5 C 0 1 N N R N N N 25.240 15.202 -2.005 -1.472 0.650 0.281 C1 HSY 1 HSY C2 C4 C 0 1 N N S N N N 24.194 15.461 -3.091 -0.851 -0.730 0.514 C2 HSY 2 HSY C3 C3 C 0 1 N N R N N N 23.719 16.906 -2.948 0.497 -0.803 -0.210 C3 HSY 3 HSY C4 C2 C 0 1 N N S N N N 24.873 17.845 -3.171 1.396 0.332 0.291 C4 HSY 4 HSY C5 C1 C 0 1 N N N N N N 26.234 17.353 -2.790 0.688 1.670 0.066 C5 HSY 5 HSY O2 O4 O 0 1 N N N N N N 23.137 14.535 -3.038 -1.723 -1.739 0.003 O2 HSY 6 HSY O3 O3 O 0 1 N N N N N N 22.656 17.188 -3.824 1.118 -2.061 0.063 O3 HSY 7 HSY O4 O2 O 0 1 N N N N N N 24.466 19.122 -2.684 2.630 0.317 -0.430 O4 HSY 8 HSY O5 O5 O 0 1 N N N N N N 26.370 16.049 -2.253 -0.572 1.660 0.740 O5 HSY 9 HSY O1 O51 O 0 1 N Y N N N N 24.688 15.496 -0.719 -1.719 0.831 -1.115 O1 HSY 10 HSY H1 H5 H 0 1 N N N N N N 25.548 14.146 -2.023 -2.411 0.723 0.829 H1 HSY 11 HSY H2 H4 H 0 1 N N N N N N 24.642 15.321 -4.086 -0.699 -0.885 1.583 H2 HSY 12 HSY H3 H3 H 0 1 N N N N N N 23.338 17.049 -1.926 0.340 -0.698 -1.283 H3 HSY 13 HSY H4 H2 H 0 1 N N N N N N 25.080 17.928 -4.248 1.593 0.198 1.355 H4 HSY 14 HSY H51 H1 H 0 1 N N N N N N 26.840 17.375 -3.708 1.304 2.478 0.460 H51 HSY 15 HSY H52 H1A H 0 1 N N N N N N 26.611 18.045 -2.023 0.527 1.822 -1.001 H52 HSY 16 HSY HO2 HO4 H 0 1 N Y N N N N 22.511 14.729 -3.726 -2.599 -1.748 0.414 HO2 HSY 17 HSY HO3 HO3 H 0 1 N Y N N N N 22.384 18.091 -3.712 1.978 -2.176 -0.365 HO3 HSY 18 HSY HO4 HO2 H 0 1 N Y N N N N 25.170 19.747 -2.807 3.249 1.011 -0.163 HO4 HSY 19 HSY HO1 H10 H 0 1 N Y N N N N 25.341 15.334 -0.049 -2.114 1.686 -1.337 HO1 HSY 20 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HSY C1 C2 SING N N 1 HSY C1 O5 SING N N 2 HSY C1 O1 SING N N 3 HSY C1 H1 SING N N 4 HSY C2 C3 SING N N 5 HSY C2 O2 SING N N 6 HSY C2 H2 SING N N 7 HSY C3 C4 SING N N 8 HSY C3 O3 SING N N 9 HSY C3 H3 SING N N 10 HSY C4 C5 SING N N 11 HSY C4 O4 SING N N 12 HSY C4 H4 SING N N 13 HSY C5 O5 SING N N 14 HSY C5 H51 SING N N 15 HSY C5 H52 SING N N 16 HSY O2 HO2 SING N N 17 HSY O3 HO3 SING N N 18 HSY O4 HO4 SING N N 19 HSY O1 HO1 SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HSY SMILES ACDLabs 12.01 "OC1C(O)COC(O)C1O" HSY SMILES_CANONICAL CACTVS 3.370 "O[C@H]1CO[C@@H](O)[C@@H](O)[C@@H]1O" HSY SMILES CACTVS 3.370 "O[CH]1CO[CH](O)[CH](O)[CH]1O" HSY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O" HSY SMILES "OpenEye OEToolkits" 1.7.0 "C1C(C(C(C(O1)O)O)O)O" HSY InChI InChI 1.03 "InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5+/m0/s1" HSY InChIKey InChI 1.03 SRBFZHDQGSBBOR-SKNVOMKLSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HSY "SYSTEMATIC NAME" ACDLabs 12.01 alpha-L-xylopyranose HSY "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "(2R,3S,4R,5S)-oxane-2,3,4,5-tetrol" HSY "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 LXylpa HSY "COMMON NAME" GMML 1.0 a-L-xylopyranose HSY "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-L-Xylp HSY "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 Xyl # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support HSY "CARBOHYDRATE ISOMER" L PDB ? HSY "CARBOHYDRATE RING" pyranose PDB ? HSY "CARBOHYDRATE ANOMER" alpha PDB ? HSY "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HSY "Create component" 2009-01-16 RCSB HSY "Modify leaving atom flag" 2010-01-09 RCSB HSY "Modify descriptor" 2011-06-04 RCSB HSY "Other modification" 2019-08-12 RCSB HSY "Other modification" 2019-12-19 RCSB HSY "Other modification" 2020-07-03 RCSB HSY "Modify synonyms" 2020-07-17 RCSB HSY "Modify atom id" 2020-07-17 RCSB HSY "Modify component atom id" 2020-07-17 RCSB HSY "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 HSY THR None Carbohydrate "Amino-acid side chain" "Any position" C1 OG1 ? ? 2 HSY THR None Carbohydrate "Amino-acid side chain" "Any position" C5 OG1 ? ? #