data_HSY
# 
_chem_comp.id                                    HSY 
_chem_comp.name                                  alpha-L-xylopyranose 
_chem_comp.type                                  "L-saccharide, alpha linking" 
_chem_comp.pdbx_type                             ATOMS 
_chem_comp.formula                               "C5 H10 O5" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "alpha-L-xylose; L-xylose; xylose" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2009-01-16 
_chem_comp.pdbx_modified_date                    2024-09-27 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        150.130 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     HSY 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        1xic 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
_chem_comp.pdbx_pcm                              Y 
# 
loop_
_pdbx_chem_comp_synonyms.ordinal 
_pdbx_chem_comp_synonyms.comp_id 
_pdbx_chem_comp_synonyms.name 
_pdbx_chem_comp_synonyms.provenance 
_pdbx_chem_comp_synonyms.type 
1 HSY alpha-L-xylose PDB ? 
2 HSY L-xylose       PDB ? 
3 HSY xylose         PDB ? 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
HSY C1  C5  C 0 1 N N R N N N 25.240 15.202 -2.005 -1.472 0.650  0.281  C1  HSY 1  
HSY C2  C4  C 0 1 N N S N N N 24.194 15.461 -3.091 -0.851 -0.730 0.514  C2  HSY 2  
HSY C3  C3  C 0 1 N N R N N N 23.719 16.906 -2.948 0.497  -0.803 -0.210 C3  HSY 3  
HSY C4  C2  C 0 1 N N S N N N 24.873 17.845 -3.171 1.396  0.332  0.291  C4  HSY 4  
HSY C5  C1  C 0 1 N N N N N N 26.234 17.353 -2.790 0.688  1.670  0.066  C5  HSY 5  
HSY O2  O4  O 0 1 N N N N N N 23.137 14.535 -3.038 -1.723 -1.739 0.003  O2  HSY 6  
HSY O3  O3  O 0 1 N N N N N N 22.656 17.188 -3.824 1.118  -2.061 0.063  O3  HSY 7  
HSY O4  O2  O 0 1 N N N N N N 24.466 19.122 -2.684 2.630  0.317  -0.430 O4  HSY 8  
HSY O5  O5  O 0 1 N N N N N N 26.370 16.049 -2.253 -0.572 1.660  0.740  O5  HSY 9  
HSY O1  O51 O 0 1 N Y N N N N 24.688 15.496 -0.719 -1.719 0.831  -1.115 O1  HSY 10 
HSY H1  H5  H 0 1 N N N N N N 25.548 14.146 -2.023 -2.411 0.723  0.829  H1  HSY 11 
HSY H2  H4  H 0 1 N N N N N N 24.642 15.321 -4.086 -0.699 -0.885 1.583  H2  HSY 12 
HSY H3  H3  H 0 1 N N N N N N 23.338 17.049 -1.926 0.340  -0.698 -1.283 H3  HSY 13 
HSY H4  H2  H 0 1 N N N N N N 25.080 17.928 -4.248 1.593  0.198  1.355  H4  HSY 14 
HSY H51 H1  H 0 1 N N N N N N 26.840 17.375 -3.708 1.304  2.478  0.460  H51 HSY 15 
HSY H52 H1A H 0 1 N N N N N N 26.611 18.045 -2.023 0.527  1.822  -1.001 H52 HSY 16 
HSY HO2 HO4 H 0 1 N Y N N N N 22.511 14.729 -3.726 -2.599 -1.748 0.414  HO2 HSY 17 
HSY HO3 HO3 H 0 1 N Y N N N N 22.384 18.091 -3.712 1.978  -2.176 -0.365 HO3 HSY 18 
HSY HO4 HO2 H 0 1 N Y N N N N 25.170 19.747 -2.807 3.249  1.011  -0.163 HO4 HSY 19 
HSY HO1 H10 H 0 1 N Y N N N N 25.341 15.334 -0.049 -2.114 1.686  -1.337 HO1 HSY 20 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
HSY C1 C2  SING N N 1  
HSY C1 O5  SING N N 2  
HSY C1 O1  SING N N 3  
HSY C1 H1  SING N N 4  
HSY C2 C3  SING N N 5  
HSY C2 O2  SING N N 6  
HSY C2 H2  SING N N 7  
HSY C3 C4  SING N N 8  
HSY C3 O3  SING N N 9  
HSY C3 H3  SING N N 10 
HSY C4 C5  SING N N 11 
HSY C4 O4  SING N N 12 
HSY C4 H4  SING N N 13 
HSY C5 O5  SING N N 14 
HSY C5 H51 SING N N 15 
HSY C5 H52 SING N N 16 
HSY O2 HO2 SING N N 17 
HSY O3 HO3 SING N N 18 
HSY O4 HO4 SING N N 19 
HSY O1 HO1 SING N N 20 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
HSY SMILES           ACDLabs              12.01 "OC1C(O)COC(O)C1O"                                                      
HSY SMILES_CANONICAL CACTVS               3.370 "O[C@H]1CO[C@@H](O)[C@@H](O)[C@@H]1O"                                   
HSY SMILES           CACTVS               3.370 "O[CH]1CO[CH](O)[CH](O)[CH]1O"                                          
HSY SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "C1[C@@H]([C@H]([C@@H]([C@@H](O1)O)O)O)O"                               
HSY SMILES           "OpenEye OEToolkits" 1.7.0 "C1C(C(C(C(O1)O)O)O)O"                                                  
HSY InChI            InChI                1.03  "InChI=1S/C5H10O5/c6-2-1-10-5(9)4(8)3(2)7/h2-9H,1H2/t2-,3+,4-,5+/m0/s1" 
HSY InChIKey         InChI                1.03  SRBFZHDQGSBBOR-SKNVOMKLSA-N                                             
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
HSY "SYSTEMATIC NAME"                     ACDLabs              12.01 alpha-L-xylopyranose                 
HSY "SYSTEMATIC NAME"                     "OpenEye OEToolkits" 1.7.0 "(2R,3S,4R,5S)-oxane-2,3,4,5-tetrol" 
HSY "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML                 1.0   LXylpa                               
HSY "COMMON NAME"                         GMML                 1.0   a-L-xylopyranose                     
HSY "IUPAC CARBOHYDRATE SYMBOL"           PDB-CARE             1.0   a-L-Xylp                             
HSY "SNFG CARBOHYDRATE SYMBOL"            GMML                 1.0   Xyl                                  
# 
loop_
_pdbx_chem_comp_feature.comp_id 
_pdbx_chem_comp_feature.type 
_pdbx_chem_comp_feature.value 
_pdbx_chem_comp_feature.source 
_pdbx_chem_comp_feature.support 
HSY "CARBOHYDRATE ISOMER"                 L        PDB ? 
HSY "CARBOHYDRATE RING"                   pyranose PDB ? 
HSY "CARBOHYDRATE ANOMER"                 alpha    PDB ? 
HSY "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose   PDB ? 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
HSY "Create component"         2009-01-16 RCSB 
HSY "Modify leaving atom flag" 2010-01-09 RCSB 
HSY "Modify descriptor"        2011-06-04 RCSB 
HSY "Other modification"       2019-08-12 RCSB 
HSY "Other modification"       2019-12-19 RCSB 
HSY "Other modification"       2020-07-03 RCSB 
HSY "Modify synonyms"          2020-07-17 RCSB 
HSY "Modify atom id"           2020-07-17 RCSB 
HSY "Modify component atom id" 2020-07-17 RCSB 
HSY "Modify PCM"               2024-09-27 PDBE 
# 
loop_
_pdbx_chem_comp_pcm.pcm_id 
_pdbx_chem_comp_pcm.comp_id 
_pdbx_chem_comp_pcm.modified_residue_id 
_pdbx_chem_comp_pcm.type 
_pdbx_chem_comp_pcm.category 
_pdbx_chem_comp_pcm.position 
_pdbx_chem_comp_pcm.polypeptide_position 
_pdbx_chem_comp_pcm.comp_id_linking_atom 
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom 
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession 
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 
1 HSY THR None Carbohydrate "Amino-acid side chain" "Any position" C1 OG1 ? ? 
2 HSY THR None Carbohydrate "Amino-acid side chain" "Any position" C5 OG1 ? ? 
#