data_HWU # _chem_comp.id HWU _chem_comp.name "(2R,3R,4R,5R,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-thiopyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H27 N3 O16 P2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "URIDINE DIPHOSPHO-5-THIO-N-ACETYLGALACTOSAMINE" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-04-30 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 623.419 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HWU _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag Y _chem_comp.pdbx_model_coordinates_db_code 4D0Z _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HWU N1 N1 N 0 1 N N N 38.331 -94.694 33.682 5.577 1.090 -0.278 N1 HWU 1 HWU C2 C2 C 0 1 N N N 38.147 -94.278 34.993 6.126 2.071 -1.017 C2 HWU 2 HWU O2 O2 O 0 1 N N N 39.095 -94.279 35.817 6.361 1.875 -2.194 O2 HWU 3 HWU N3 N3 N 0 1 N N N 36.932 -93.856 35.448 6.419 3.266 -0.472 N3 HWU 4 HWU C4 C4 C 0 1 N N N 35.876 -93.827 34.575 6.164 3.500 0.831 C4 HWU 5 HWU O4 O4 O 0 1 N N N 34.741 -93.461 34.946 6.428 4.581 1.325 O4 HWU 6 HWU C5 C5 C 0 1 N N N 36.038 -94.233 33.241 5.586 2.476 1.620 C5 HWU 7 HWU C6 C6 C 0 1 N N N 37.284 -94.651 32.819 5.303 1.286 1.048 C6 HWU 8 HWU PA PA P 0 1 N N N 39.236 -96.417 28.298 0.290 -2.665 0.863 PA HWU 9 HWU PB PB P 0 1 N N N 39.860 -95.417 25.694 -2.461 -1.571 1.004 PB HWU 10 HWU "C1'" "C1'" C 0 1 N N R 40.896 -92.814 25.134 -4.450 0.148 0.526 "C1'" HWU 11 HWU "O1'" "O1'" O 0 1 N N N 40.215 -93.829 25.942 -3.201 -0.430 0.142 "O1'" HWU 12 HWU O1A O1A O 0 1 N N N 37.905 -96.902 28.782 0.533 -2.335 2.285 O1A HWU 13 HWU C1B C1B C 0 1 N N R 39.652 -95.172 33.224 5.264 -0.199 -0.900 C1B HWU 14 HWU O1B O1B O 0 1 N N N 38.889 -95.415 24.571 -2.276 -1.098 2.394 O1B HWU 15 HWU "C2'" "C2'" C 0 1 N N R 42.237 -92.530 25.868 -5.224 0.575 -0.725 "C2'" HWU 16 HWU "N2'" "N2'" N 0 1 N N N 43.078 -93.728 25.790 -5.537 -0.608 -1.530 "N2'" HWU 17 HWU "O2'" "O2'" O 0 1 N N N 39.698 -97.655 33.552 7.392 -1.420 -0.959 "O2'" HWU 18 HWU O2A O2A O 0 1 N N N 40.430 -97.354 28.171 0.072 -4.253 0.711 O2A HWU 19 HWU C2B C2B C 0 1 N N R 39.619 -96.578 32.594 6.134 -1.326 -0.288 C2B HWU 20 HWU O2B O2B O 0 1 N N N 41.134 -96.190 25.613 -3.359 -2.907 1.007 O2B HWU 21 HWU "C3'" "C3'" C 0 1 N N R 41.944 -92.129 27.339 -4.383 1.543 -1.552 "C3'" HWU 22 HWU "O3'" "O3'" O 0 1 N N N 43.123 -92.070 28.168 -5.000 1.731 -2.827 "O3'" HWU 23 HWU O3A O3A O 0 1 N N N 38.891 -95.698 26.899 -1.025 -1.891 0.350 O3A HWU 24 HWU C3B C3B C 0 1 N N S 40.808 -96.471 31.646 5.270 -2.583 -0.555 C3B HWU 25 HWU O3B O3B O 0 1 N N N 42.031 -96.758 32.310 5.722 -3.260 -1.730 O3B HWU 26 HWU "C4'" "C4'" C 0 1 N N R 41.153 -90.792 27.298 -4.263 2.891 -0.848 "C4'" HWU 27 HWU "O4'" "O4'" O 0 1 N N N 41.980 -89.686 26.886 -5.561 3.335 -0.447 "O4'" HWU 28 HWU C4B C4B C 0 1 N N R 40.759 -95.007 31.166 3.849 -2.027 -0.767 C4B HWU 29 HWU O4B O4B O 0 1 N N N 40.283 -94.274 32.283 3.915 -0.604 -0.581 O4B HWU 30 HWU "C5'" "C5'" C 0 1 N N R 39.920 -90.931 26.364 -3.368 2.758 0.387 "C5'" HWU 31 HWU "S5'" "S5'" S 0 1 N N N 40.172 -91.513 24.986 -4.152 1.613 1.560 "S5'" HWU 32 HWU C5B C5B C 0 1 N N N 39.566 -94.799 30.230 2.892 -2.641 0.257 C5B HWU 33 HWU O5B O5B O 0 1 N N N 39.905 -95.115 28.953 1.558 -2.211 -0.019 O5B HWU 34 HWU "C6'" "C6'" C 0 1 N N N 39.171 -89.601 26.407 -3.196 4.128 1.046 "C6'" HWU 35 HWU "O6'" "O6'" O 0 1 N N N 38.546 -89.447 27.698 -2.689 5.058 0.086 "O6'" HWU 36 HWU "C7'" "C7'" C 0 1 N N N 44.301 -93.705 25.222 -6.636 -1.338 -1.256 "C7'" HWU 37 HWU "O7'" "O7'" O 0 1 N N N 44.846 -92.707 24.764 -7.366 -1.016 -0.342 "O7'" HWU 38 HWU "C8'" "C8'" C 0 1 N N N 45.025 -95.020 25.171 -6.959 -2.555 -2.085 "C8'" HWU 39 HWU HO2A HO2A H 0 0 N N N 40.176 -98.229 28.439 -0.093 -4.542 -0.197 HO2A HWU 40 HWU H6 H6 H 0 1 N N N 37.428 -94.947 31.790 4.861 0.494 1.634 H6 HWU 41 HWU H1B H1B H 0 1 N N N 40.301 -95.240 34.109 5.406 -0.147 -1.980 H1B HWU 42 HWU H3 H3 H 0 1 N N N 36.814 -93.573 36.400 6.815 3.962 -1.019 H3 HWU 43 HWU H5 H5 H 0 1 N N N 35.202 -94.219 32.557 5.375 2.644 2.666 H5 HWU 44 HWU H2B H2B H 0 1 N N N 41.183 -96.634 24.774 -3.522 -3.274 0.127 H2B HWU 45 HWU "H2'" "H2'" H 0 1 N N N 42.740 -91.689 25.368 -6.150 1.066 -0.427 "H2'" HWU 46 HWU HA HA H 0 1 N N N 38.699 -96.674 31.999 6.275 -1.171 0.781 HA HWU 47 HWU HB HB H 0 1 N N N 42.735 -94.587 26.169 -4.953 -0.865 -2.261 HB HWU 48 HWU "H3'" "H3'" H 0 1 N N N 41.267 -92.891 27.752 -3.387 1.123 -1.693 "H3'" HWU 49 HWU HC HC H 0 1 N N N 39.672 -98.488 33.096 7.972 -2.112 -0.611 HC HWU 50 HWU H3B H3B H 0 1 N N N 40.657 -97.142 30.787 5.296 -3.253 0.304 H3B HWU 51 HWU HD HD H 0 1 N N N 42.878 -91.821 29.051 -4.521 2.336 -3.410 HD HWU 52 HWU "H4'" "H4'" H 0 1 N N N 40.778 -90.598 28.314 -3.827 3.619 -1.532 "H4'" HWU 53 HWU HE HE H 0 1 N N N 42.751 -96.683 31.695 6.633 -3.580 -1.673 HE HWU 54 HWU H4B H4B H 0 1 N N N 41.712 -94.657 30.743 3.509 -2.254 -1.777 H4B HWU 55 HWU HF HF H 0 1 N N N 41.462 -88.890 26.874 -5.574 4.226 -0.073 HF HWU 56 HWU H5B1 H5B1 H 0 0 N N N 38.735 -95.442 30.554 2.943 -3.729 0.196 H5B1 HWU 57 HWU H5B2 H5B2 H 0 0 N N N 39.252 -93.746 30.272 3.178 -2.321 1.259 H5B2 HWU 58 HWU "H6'1" "H6'1" H 0 0 N N N 39.879 -88.775 26.241 -4.160 4.477 1.416 "H6'1" HWU 59 HWU "H6'2" "H6'2" H 0 0 N N N 38.401 -89.588 25.622 -2.496 4.047 1.877 "H6'2" HWU 60 HWU "H6'" "H6'" H 0 1 N N N 38.079 -88.620 27.728 -2.555 5.950 0.435 "H6'" HWU 61 HWU "H8'1" "H8'1" H 0 0 N N N 46.007 -94.880 24.696 -6.195 -2.684 -2.852 "H8'1" HWU 62 HWU "H8'2" "H8'2" H 0 0 N N N 45.163 -95.402 26.193 -6.982 -3.435 -1.443 "H8'2" HWU 63 HWU "H8'3" "H8'3" H 0 0 N N N 44.434 -95.741 24.587 -7.932 -2.424 -2.558 "H8'3" HWU 64 HWU "H1'" "H1'" H 0 1 N N N ? ? ? ? ? ? "H1'" HWU 65 HWU "H5'" "H5'" H 0 1 N N N 39.260 -91.652 26.869 -2.393 2.368 0.092 "H5'" HWU 66 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HWU N1 C2 SING N N 1 HWU N1 C6 SING N N 2 HWU N1 C1B SING N N 3 HWU C2 O2 DOUB N N 4 HWU C2 N3 SING N N 5 HWU N3 C4 SING N N 6 HWU C4 O4 DOUB N N 7 HWU C4 C5 SING N N 8 HWU C5 C6 DOUB N N 9 HWU PA O1A DOUB N N 10 HWU PA O2A SING N N 11 HWU PA O3A SING N N 12 HWU PA O5B SING N N 13 HWU PB "O1'" SING N N 14 HWU PB O1B DOUB N N 15 HWU PB O2B SING N N 16 HWU PB O3A SING N N 17 HWU "C1'" "O1'" SING N N 18 HWU "C1'" "C2'" SING N N 19 HWU "C1'" "S5'" SING N N 20 HWU C1B C2B SING N N 21 HWU C1B O4B SING N N 22 HWU "C2'" "N2'" SING N N 23 HWU "C2'" "C3'" SING N N 24 HWU "N2'" "C7'" SING N N 25 HWU "C8'" "C7'" SING N N 26 HWU "O2'" C2B SING N N 27 HWU C2B C3B SING N N 28 HWU "C3'" "O3'" SING N N 29 HWU "C3'" "C4'" SING N N 30 HWU C3B O3B SING N N 31 HWU C3B C4B SING N N 32 HWU "C4'" "O4'" SING N N 33 HWU "C4'" "C5'" SING N N 34 HWU C4B O4B SING N N 35 HWU C4B C5B SING N N 36 HWU "C5'" "S5'" SING N N 37 HWU "C5'" "C6'" SING N N 38 HWU C5B O5B SING N N 39 HWU "C6'" "O6'" SING N N 40 HWU "C7'" "O7'" DOUB N N 41 HWU O2A HO2A SING N N 42 HWU C6 H6 SING N N 43 HWU C1B H1B SING N N 44 HWU N3 H3 SING N N 45 HWU C5 H5 SING N N 46 HWU O2B H2B SING N N 47 HWU "C2'" "H2'" SING N N 48 HWU C2B HA SING N N 49 HWU "N2'" HB SING N N 50 HWU "C3'" "H3'" SING N N 51 HWU "O2'" HC SING N N 52 HWU C3B H3B SING N N 53 HWU "O3'" HD SING N N 54 HWU "C4'" "H4'" SING N N 55 HWU O3B HE SING N N 56 HWU C4B H4B SING N N 57 HWU "O4'" HF SING N N 58 HWU C5B H5B1 SING N N 59 HWU C5B H5B2 SING N N 60 HWU "C6'" "H6'1" SING N N 61 HWU "C6'" "H6'2" SING N N 62 HWU "O6'" "H6'" SING N N 63 HWU "C8'" "H8'1" SING N N 64 HWU "C8'" "H8'2" SING N N 65 HWU "C8'" "H8'3" SING N N 66 HWU "C1'" "H1'" SING N N 67 HWU "C5'" "H5'" SING N N 68 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HWU SMILES ACDLabs 12.01 "O=C1C=CN(C(=O)N1)C2OC(C(O)C2O)COP(=O)(OP(=O)(OC3SC(C(O)C(O)C3NC(=O)C)CO)O)O" HWU InChI InChI 1.03 "InChI=1S/C17H27N3O16P2S/c1-6(22)18-10-13(26)12(25)8(4-21)39-16(10)35-38(31,32)36-37(29,30)33-5-7-11(24)14(27)15(34-7)20-3-2-9(23)19-17(20)28/h2-3,7-8,10-16,21,24-27H,4-5H2,1H3,(H,18,22)(H,29,30)(H,31,32)(H,19,23,28)/t7-,8-,10-,11-,12+,13-,14-,15-,16?/m1/s1" HWU InChIKey InChI 1.03 JPRVHSQHWXZSNC-KZEZZKTRSA-N HWU SMILES_CANONICAL CACTVS 3.385 "CC(=O)N[C@@H]1[C@@H](O)[C@@H](O)[C@@H](CO)S[C@H]1O[P](O)(=O)O[P](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)N3C=CC(=O)NC3=O" HWU SMILES CACTVS 3.385 "CC(=O)N[CH]1[CH](O)[CH](O)[CH](CO)S[CH]1O[P](O)(=O)O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)N3C=CC(=O)NC3=O" HWU SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)N[C@@H]1[C@H]([C@H]([C@H](S[C@@H]1OP(=O)(O)OP(=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)N3C=CC(=O)NC3=O)O)O)CO)O)O" HWU SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)NC1C(C(C(SC1OP(=O)(O)OP(=O)(O)OCC2C(C(C(O2)N3C=CC(=O)NC3=O)O)O)CO)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HWU "SYSTEMATIC NAME" ACDLabs 12.01 "(2R,3R,4R,5R,6R)-3-(acetylamino)-4,5-dihydroxy-6-(hydroxymethyl)tetrahydro-2H-thiopyran-2-yl [(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methyl dihydrogen diphosphate (non-preferred name)" HWU "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2S,3R,4R,5R,6R)-3-acetamido-6-(hydroxymethyl)-4,5-bis(oxidanyl)thian-2-yl] [[(2R,3S,4R,5R)-5-[2,4-bis(oxidanylidene)pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HWU "Create component" 2014-04-30 EBI HWU "Create component" 2014-05-20 EBI HWU "Initial release" 2014-05-28 RCSB HWU "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id HWU _pdbx_chem_comp_synonyms.name "URIDINE DIPHOSPHO-5-THIO-N-ACETYLGALACTOSAMINE" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##