data_HXB # _chem_comp.id HXB _chem_comp.name ;4'-methylthymidine 5'-(tetrahydrogen triphosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C11 H19 N2 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-03-31 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 496.195 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HXB _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3M8S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HXB C1 C1 C 0 1 N N N 19.176 -21.323 -11.689 1.652 2.455 2.009 C1 HXB 1 HXB N1 N1 N 0 1 N N N 19.154 -19.283 -7.341 4.651 -0.480 0.368 N1 HXB 2 HXB O1 O1 O 0 1 N N N 18.153 -15.942 -11.227 -2.539 0.462 -0.101 O1 HXB 3 HXB P1 P1 P 0 1 N N N 19.654 -16.305 -11.492 -1.520 1.493 -0.802 P1 HXB 4 HXB C2 C2 C 0 1 N N N 18.820 -19.731 -5.986 4.431 -0.893 -0.893 C2 HXB 5 HXB O2 O2 O 0 1 N N N 18.413 -20.883 -5.801 3.702 -0.243 -1.618 O2 HXB 6 HXB P2 P2 P 0 1 N N N 16.999 -16.262 -12.226 -3.851 -0.326 -0.599 P2 HXB 7 HXB N3 N3 N 0 1 N N N 19.001 -18.828 -4.893 5.007 -2.015 -1.364 N3 HXB 8 HXB O3 O3 O 0 1 N N N 16.383 -14.914 -12.758 -4.718 -0.786 0.678 O3 HXB 9 HXB P3 P3 P 0 1 N N N 17.136 -13.958 -13.749 -6.225 -1.315 0.874 P3 HXB 10 HXB C4 C4 C 0 1 N N N 19.478 -17.550 -5.115 5.818 -2.746 -0.574 C4 HXB 11 HXB O4 O4 O 0 1 N N N 19.623 -16.790 -4.163 6.339 -3.761 -0.999 O4 HXB 12 HXB C5 C5 C 0 1 N N N 19.798 -17.108 -6.461 6.058 -2.323 0.756 C5 HXB 13 HXB O5 O5 O 0 1 N N N 16.123 -13.421 -14.728 -7.136 -0.547 -0.004 O5 HXB 14 HXB C6 C6 C 0 1 N N N 19.618 -18.021 -7.571 5.468 -1.194 1.203 C6 HXB 15 HXB O6 O6 O 0 1 N N N 18.279 -14.706 -14.510 -6.300 -2.877 0.491 O6 HXB 16 HXB O7 O7 O 0 1 N N N 17.753 -12.770 -12.969 -6.668 -1.117 2.409 O7 HXB 17 HXB O8 O8 O 0 1 N N N 15.924 -17.007 -11.463 -3.410 -1.623 -1.444 O8 HXB 18 HXB O9 O9 O 0 1 N N N 17.496 -17.127 -13.427 -4.667 0.565 -1.454 O9 HXB 19 HXB "C1'" C1* C 0 1 N N R 18.929 -20.189 -8.464 4.016 0.748 0.851 C1* HXB 20 HXB O10 O10 O 0 1 N N N 19.976 -16.271 -12.973 -1.253 1.055 -2.191 O10 HXB 21 HXB O11 O11 O 0 1 N N N 20.549 -15.256 -10.736 -2.172 2.965 -0.819 O11 HXB 22 HXB "C2'" C2* C 0 1 N N N 17.568 -20.368 -9.136 4.508 1.973 0.039 C2* HXB 23 HXB "C3'" C3* C 0 1 N N S 17.742 -19.721 -10.444 3.339 2.972 0.217 C3* HXB 24 HXB "O3'" O3* O 0 1 N N N 16.716 -19.847 -11.374 3.632 3.905 1.259 O3* HXB 25 HXB "C4'" C4* C 0 1 N N R 19.170 -20.085 -10.853 2.140 2.085 0.607 C4* HXB 26 HXB "O4'" O4* O 0 1 N N N 19.902 -20.356 -9.594 2.595 0.719 0.596 O4* HXB 27 HXB "C5'" C5* C 0 1 N N N 19.792 -18.929 -11.609 1.006 2.269 -0.404 C5* HXB 28 HXB "O5'" O5* O 0 1 N N N 19.956 -17.735 -10.894 -0.138 1.528 0.024 O5* HXB 29 HXB C5M C5M C 0 1 N N N 20.311 -15.716 -6.706 6.960 -3.123 1.661 C5M HXB 30 HXB H1 H1 H 0 1 N N N 20.210 -21.569 -11.973 1.345 3.501 2.022 H1 HXB 31 HXB H1A H1A H 0 1 N N N 18.746 -22.156 -11.113 0.805 1.824 2.277 H1A HXB 32 HXB H1B H1B H 0 1 N N N 18.576 -21.156 -12.596 2.459 2.305 2.726 H1B HXB 33 HXB HN3 HN3 H 0 1 N N N 18.781 -19.122 -3.963 4.837 -2.299 -2.276 HN3 HXB 34 HXB H6 H6 H 0 1 N N N 19.850 -17.704 -8.577 5.639 -0.856 2.214 H6 HXB 35 HXB HO6 HO6 H 0 1 N N N 18.111 -14.676 -15.444 -5.728 -3.441 1.028 HO6 HXB 36 HXB HO7 HO7 H 0 1 N N N 17.365 -11.957 -13.270 -7.568 -1.415 2.601 HO7 HXB 37 HXB HO8 HO8 H 0 1 N N N 15.771 -17.851 -11.872 -2.871 -2.253 -0.946 HO8 HXB 38 HXB "H1'" H1* H 0 1 N N N 19.095 -20.927 -7.666 4.212 0.888 1.914 H1* HXB 39 HXB HO11 HO11 H 0 0 N N N 21.112 -14.812 -11.359 -2.374 3.316 0.059 HO11 HXB 40 HXB "H2'" H2* H 0 1 N N N 17.308 -21.431 -9.244 5.430 2.374 0.460 H2* HXB 41 HXB "H2'A" H2*A H 0 0 N N N 16.765 -19.891 -8.554 4.642 1.714 -1.012 H2*A HXB 42 HXB "H3'" H3* H 0 1 N N N 17.632 -18.628 -10.378 3.138 3.495 -0.717 H3* HXB 43 HXB "HO3'" HO3* H 0 0 N N N 16.952 -19.387 -12.171 4.413 4.450 1.090 HO3* HXB 44 HXB "H5'" H5* H 0 1 N N N 20.791 -19.253 -11.936 0.750 3.326 -0.473 H5* HXB 45 HXB "H5'A" H5*A H 0 0 N N N 19.137 -18.709 -12.465 1.328 1.908 -1.381 H5*A HXB 46 HXB H5M H5M H 0 1 N N N 20.493 -15.576 -7.782 7.336 -3.992 1.122 H5M HXB 47 HXB H5MA H5MA H 0 0 N N N 19.565 -14.985 -6.362 7.797 -2.502 1.980 H5MA HXB 48 HXB H5MB H5MB H 0 0 N N N 21.251 -15.569 -6.153 6.398 -3.453 2.535 H5MB HXB 49 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HXB C1 "C4'" SING N N 1 HXB C1 H1 SING N N 2 HXB C1 H1A SING N N 3 HXB C1 H1B SING N N 4 HXB "C1'" N1 SING N N 5 HXB C6 N1 SING N N 6 HXB N1 C2 SING N N 7 HXB P2 O1 SING N N 8 HXB P1 O1 SING N N 9 HXB O10 P1 DOUB N N 10 HXB P1 "O5'" SING N N 11 HXB P1 O11 SING N N 12 HXB C2 O2 DOUB N N 13 HXB C2 N3 SING N N 14 HXB O9 P2 DOUB N N 15 HXB O3 P2 SING N N 16 HXB P2 O8 SING N N 17 HXB C4 N3 SING N N 18 HXB N3 HN3 SING N N 19 HXB P3 O3 SING N N 20 HXB O5 P3 DOUB N N 21 HXB O6 P3 SING N N 22 HXB P3 O7 SING N N 23 HXB C5 C4 SING N N 24 HXB C4 O4 DOUB N N 25 HXB C6 C5 DOUB N N 26 HXB C5M C5 SING N N 27 HXB C6 H6 SING N N 28 HXB O6 HO6 SING N N 29 HXB O7 HO7 SING N N 30 HXB O8 HO8 SING N N 31 HXB "O4'" "C1'" SING N N 32 HXB "C2'" "C1'" SING N N 33 HXB "C1'" "H1'" SING N N 34 HXB O11 HO11 SING N N 35 HXB "C3'" "C2'" SING N N 36 HXB "C2'" "H2'" SING N N 37 HXB "C2'" "H2'A" SING N N 38 HXB "O3'" "C3'" SING N N 39 HXB "C4'" "C3'" SING N N 40 HXB "C3'" "H3'" SING N N 41 HXB "O3'" "HO3'" SING N N 42 HXB "C5'" "C4'" SING N N 43 HXB "C4'" "O4'" SING N N 44 HXB "C5'" "O5'" SING N N 45 HXB "C5'" "H5'" SING N N 46 HXB "C5'" "H5'A" SING N N 47 HXB C5M H5M SING N N 48 HXB C5M H5MA SING N N 49 HXB C5M H5MB SING N N 50 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HXB SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2(OC(N1C(=O)NC(=O)C(=C1)C)CC2O)C" HXB SMILES_CANONICAL CACTVS 3.370 "CC1=CN([C@H]2C[C@H](O)[C@@](C)(CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" HXB SMILES CACTVS 3.370 "CC1=CN([CH]2C[CH](O)[C](C)(CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O2)C(=O)NC1=O" HXB SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC1=CN(C(=O)NC1=O)[C@H]2C[C@@H]([C@@](O2)(C)CO[P@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O)O" HXB SMILES "OpenEye OEToolkits" 1.7.0 "CC1=CN(C(=O)NC1=O)C2CC(C(O2)(C)COP(=O)(O)OP(=O)(O)OP(=O)(O)O)O" HXB InChI InChI 1.03 "InChI=1S/C11H19N2O14P3/c1-6-4-13(10(16)12-9(6)15)8-3-7(14)11(2,25-8)5-24-29(20,21)27-30(22,23)26-28(17,18)19/h4,7-8,14H,3,5H2,1-2H3,(H,20,21)(H,22,23)(H,12,15,16)(H2,17,18,19)/t7-,8+,11+/m0/s1" HXB InChIKey InChI 1.03 IUVOCYKHODEDJI-VAOFZXAKSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HXB "SYSTEMATIC NAME" ACDLabs 12.01 ;4'-methylthymidine 5'-(tetrahydrogen triphosphate) ; HXB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[hydroxy-[[(2R,3S,5R)-3-hydroxy-2-methyl-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methoxy]phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HXB "Create component" 2010-03-31 RCSB HXB "Modify descriptor" 2011-06-04 RCSB #