data_HXZ # _chem_comp.id HXZ _chem_comp.name ;4'-ethylthymidine 5'-(tetrahydrogen triphosphate) ; _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H21 N2 O14 P3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2010-03-31 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 510.221 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HXZ _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3M8R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HXZ C1 C1 C 0 1 N N N 19.056 -21.299 -11.663 1.659 2.487 1.769 C1 HXZ 1 HXZ N1 N1 N 0 1 N N N 19.133 -19.246 -7.273 4.609 -0.606 0.343 N1 HXZ 2 HXZ O1 O1 O 0 1 N N N 18.125 -16.007 -11.279 -2.559 0.364 -0.174 O1 HXZ 3 HXZ P1 P1 P 0 1 N N N 19.652 -16.300 -11.541 -1.538 1.338 -0.950 P1 HXZ 4 HXZ C2 C2 C 0 1 N N N 18.794 -19.689 -5.911 4.375 -1.112 -0.881 C2 HXZ 5 HXZ O2 O2 O 0 1 N N N 18.366 -20.814 -5.735 3.650 -0.510 -1.650 O2 HXZ 6 HXZ P2 P2 P 0 1 N N N 16.961 -16.247 -12.323 -3.879 -0.448 -0.610 P2 HXZ 7 HXZ C3 C3 C 0 1 N N N 20.353 -22.020 -11.857 1.099 3.906 1.644 C3 HXZ 8 HXZ N3 N3 N 0 1 N N N 18.966 -18.814 -4.830 4.933 -2.274 -1.268 N3 HXZ 9 HXZ O3 O3 O 0 1 N N N 16.338 -14.868 -12.783 -4.741 -0.814 0.700 O3 HXZ 10 HXZ P3 P3 P 0 1 N N N 17.028 -13.987 -13.890 -6.251 -1.319 0.940 P3 HXZ 11 HXZ C4 C4 C 0 1 N N N 19.459 -17.540 -5.032 5.740 -2.953 -0.427 C4 HXZ 12 HXZ O4 O4 O 0 1 N N N 19.613 -16.793 -4.077 6.246 -4.005 -0.776 O4 HXZ 13 HXZ C5 C5 C 0 1 N N N 19.794 -17.105 -6.362 5.994 -2.432 0.864 C5 HXZ 14 HXZ O5 O5 O 0 1 N N N 17.679 -12.728 -13.234 -6.684 -1.012 2.460 O5 HXZ 15 HXZ C6 C6 C 0 1 N N N 19.613 -18.012 -7.479 5.421 -1.264 1.226 C6 HXZ 16 HXZ O6 O6 O 0 1 N N N 15.938 -13.528 -14.909 -7.161 -0.608 0.014 O6 HXZ 17 HXZ O7 O7 O 0 1 N N N 18.110 -14.785 -14.585 -6.337 -2.903 0.666 O7 HXZ 18 HXZ O8 O8 O 0 1 N N N 15.837 -17.045 -11.586 -3.449 -1.804 -1.365 O8 HXZ 19 HXZ O9 O9 O 0 1 N N N 17.455 -17.033 -13.515 -4.694 0.387 -1.520 O9 HXZ 20 HXZ "C1'" "C1'" C 0 1 N N R 18.980 -20.151 -8.415 3.992 0.664 0.734 "C1'" HXZ 21 HXZ O10 O10 O 0 1 N N N 20.015 -16.255 -13.056 -1.281 0.803 -2.306 O10 HXZ 22 HXZ O11 O11 O 0 1 N N N 20.476 -15.240 -10.844 -2.182 2.809 -1.066 O11 HXZ 23 HXZ "C2'" "C2'" C 0 1 N N N 17.608 -20.304 -9.027 4.495 1.816 -0.174 "C2'" HXZ 24 HXZ "C3'" "C3'" C 0 1 N N S 17.734 -19.615 -10.321 3.340 2.841 -0.066 "C3'" HXZ 25 HXZ "O3'" "O3'" O 0 1 N N N 16.673 -19.606 -11.211 3.653 3.848 0.898 "O3'" HXZ 26 HXZ "C4'" "C4'" C 0 1 N N R 19.111 -20.035 -10.820 2.133 2.003 0.397 "C4'" HXZ 27 HXZ "O4'" "O4'" O 0 1 N N N 19.924 -20.308 -9.577 2.569 0.635 0.489 "O4'" HXZ 28 HXZ "C5'" "C5'" C 0 1 N N N 19.714 -18.886 -11.620 0.995 2.124 -0.618 "C5'" HXZ 29 HXZ "O5'" "O5'" O 0 1 N N N 20.031 -17.715 -10.935 -0.152 1.421 -0.134 "O5'" HXZ 30 HXZ C5M C5M C 0 1 N N N 20.329 -15.714 -6.614 6.892 -3.171 1.823 C5M HXZ 31 HXZ H1A H1A H 0 1 N N N 18.689 -21.012 -12.659 2.499 2.488 2.464 H1A HXZ 32 HXZ H3B H3B H 0 1 N N N 20.188 -22.912 -12.479 0.873 4.296 2.636 H3B HXZ 33 HXZ H3A H3A H 0 1 N N N 21.072 -21.353 -12.356 1.837 4.546 1.161 H3A HXZ 34 HXZ HN3 HN3 H 0 1 N N N 18.730 -19.114 -3.906 4.754 -2.625 -2.154 HN3 HXZ 35 HXZ HO5 HO5 H 0 1 N N N 17.279 -11.943 -13.589 -7.584 -1.291 2.676 HO5 HXZ 36 HXZ H6 H6 H 0 1 N N N 19.866 -17.692 -8.479 5.604 -0.851 2.207 H6 HXZ 37 HXZ HO7 HO7 H 0 1 N N N 17.911 -14.850 -15.512 -5.765 -3.432 1.238 HO7 HXZ 38 HXZ HO8 HO8 H 0 1 N N N 15.687 -17.869 -12.035 -2.912 -2.401 -0.827 HO8 HXZ 39 HXZ "H1'" "H1'" H 0 1 N N N 19.305 -20.907 -7.685 4.197 0.884 1.781 "H1'" HXZ 40 HXZ HO11 HO11 H 0 0 N N N 21.021 -14.793 -11.481 -2.377 3.221 -0.213 HO11 HXZ 41 HXZ "H2'" "H2'" H 0 1 N N N 17.339 -21.363 -9.157 5.424 2.236 0.210 "H2'" HXZ 42 HXZ "H2'A" "H2'A" H 0 0 N N N 16.831 -19.844 -8.398 4.619 1.476 -1.202 "H2'A" HXZ 43 HXZ "H3'" "H3'" H 0 1 N N N 17.657 -18.526 -10.187 3.139 3.294 -1.037 "H3'" HXZ 44 HXZ "HO3'" "HO3'" H 0 0 N N N 16.918 -19.122 -11.991 4.439 4.368 0.683 "HO3'" HXZ 45 HXZ "H5'" "H5'" H 0 1 N N N 20.650 -19.261 -12.059 0.744 3.175 -0.759 "H5'" HXZ 46 HXZ "H5'A" "H5'A" H 0 0 N N N 18.978 -18.614 -12.391 1.309 1.694 -1.569 "H5'A" HXZ 47 HXZ H5M H5M H 0 1 N N N 20.520 -15.583 -7.689 7.254 -4.085 1.351 H5M HXZ 48 HXZ H5MA H5MA H 0 0 N N N 19.590 -14.971 -6.280 7.739 -2.539 2.088 H5MA HXZ 49 HXZ H5MB H5MB H 0 0 N N N 21.266 -15.575 -6.056 6.332 -3.425 2.723 H5MB HXZ 50 HXZ H1B H1B H 0 1 N N N 18.366 -21.995 -11.164 0.881 1.821 2.141 H1B HXZ 51 HXZ H3C H3C H 0 1 N N N 20.753 -22.325 -10.879 0.188 3.885 1.046 H3C HXZ 52 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HXZ C3 C1 SING N N 1 HXZ C1 "C4'" SING N N 2 HXZ C1 H1A SING N N 3 HXZ "C1'" N1 SING N N 4 HXZ C6 N1 SING N N 5 HXZ N1 C2 SING N N 6 HXZ P2 O1 SING N N 7 HXZ P1 O1 SING N N 8 HXZ O10 P1 DOUB N N 9 HXZ P1 "O5'" SING N N 10 HXZ P1 O11 SING N N 11 HXZ C2 O2 DOUB N N 12 HXZ C2 N3 SING N N 13 HXZ O9 P2 DOUB N N 14 HXZ O3 P2 SING N N 15 HXZ P2 O8 SING N N 16 HXZ C3 H3B SING N N 17 HXZ C3 H3A SING N N 18 HXZ C4 N3 SING N N 19 HXZ N3 HN3 SING N N 20 HXZ P3 O3 SING N N 21 HXZ O6 P3 DOUB N N 22 HXZ O7 P3 SING N N 23 HXZ P3 O5 SING N N 24 HXZ C5 C4 SING N N 25 HXZ C4 O4 DOUB N N 26 HXZ C6 C5 DOUB N N 27 HXZ C5M C5 SING N N 28 HXZ O5 HO5 SING N N 29 HXZ C6 H6 SING N N 30 HXZ O7 HO7 SING N N 31 HXZ O8 HO8 SING N N 32 HXZ "O4'" "C1'" SING N N 33 HXZ "C2'" "C1'" SING N N 34 HXZ "C1'" "H1'" SING N N 35 HXZ O11 HO11 SING N N 36 HXZ "C3'" "C2'" SING N N 37 HXZ "C2'" "H2'" SING N N 38 HXZ "C2'" "H2'A" SING N N 39 HXZ "O3'" "C3'" SING N N 40 HXZ "C4'" "C3'" SING N N 41 HXZ "C3'" "H3'" SING N N 42 HXZ "O3'" "HO3'" SING N N 43 HXZ "C5'" "C4'" SING N N 44 HXZ "C4'" "O4'" SING N N 45 HXZ "C5'" "O5'" SING N N 46 HXZ "C5'" "H5'" SING N N 47 HXZ "C5'" "H5'A" SING N N 48 HXZ C5M H5M SING N N 49 HXZ C5M H5MA SING N N 50 HXZ C5M H5MB SING N N 51 HXZ C1 H1B SING N N 52 HXZ C3 H3C SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HXZ SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(O)OP(=O)(O)OCC2(OC(N1C(=O)NC(=O)C(=C1)C)CC2O)CC" HXZ SMILES_CANONICAL CACTVS 3.370 "CC[C@]1(CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[C@H](C[C@@H]1O)N2C=C(C)C(=O)NC2=O" HXZ SMILES CACTVS 3.370 "CC[C]1(CO[P](O)(=O)O[P](O)(=O)O[P](O)(O)=O)O[CH](C[CH]1O)N2C=C(C)C(=O)NC2=O" HXZ SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 "CC[C@]1([C@H](C[C@@H](O1)N2C=C(C(=O)NC2=O)C)O)CO[P@](=O)(O)O[P@@](=O)(O)OP(=O)(O)O" HXZ SMILES "OpenEye OEToolkits" 1.7.0 "CCC1(C(CC(O1)N2C=C(C(=O)NC2=O)C)O)COP(=O)(O)OP(=O)(O)OP(=O)(O)O" HXZ InChI InChI 1.03 "InChI=1S/C12H21N2O14P3/c1-3-12(6-25-30(21,22)28-31(23,24)27-29(18,19)20)8(15)4-9(26-12)14-5-7(2)10(16)13-11(14)17/h5,8-9,15H,3-4,6H2,1-2H3,(H,21,22)(H,23,24)(H,13,16,17)(H2,18,19,20)/t8-,9+,12+/m0/s1" HXZ InChIKey InChI 1.03 RICQFQMPHJAPNN-YGOYTEALSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HXZ "SYSTEMATIC NAME" ACDLabs 12.01 ;4'-ethylthymidine 5'-(tetrahydrogen triphosphate) ; HXZ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 "[[(2R,3S,5R)-2-ethyl-3-hydroxy-5-(5-methyl-2,4-dioxo-pyrimidin-1-yl)oxolan-2-yl]methoxy-hydroxy-phosphoryl] phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HXZ "Create component" 2010-03-31 RCSB HXZ "Modify descriptor" 2011-06-04 RCSB #