data_HY9 # _chem_comp.id HY9 _chem_comp.name "2-[[(3S)-3-acetamido-4-[[(2R)-1-(oxidanylamino)-1-oxidanylidene-propan-2-yl]amino]-4-oxidanylidene-butyl]-(cyclopentylmethyl)amino]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H30 N4 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2021-02-22 _chem_comp.pdbx_modified_date 2022-02-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 386.443 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HY9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7E63 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HY9 C3 C1 C 0 1 N N N 28.466 11.626 -18.128 -0.033 -3.033 -0.332 C3 HY9 1 HY9 C4 C2 C 0 1 N N N 29.974 10.523 -21.339 -2.228 -1.106 0.081 C4 HY9 2 HY9 C5 C3 C 0 1 N N R 32.423 11.609 -21.646 -4.393 -0.133 -0.467 C5 HY9 3 HY9 C6 C4 C 0 1 N N N 26.392 11.338 -20.864 1.313 -0.020 1.046 C6 HY9 4 HY9 C7 C5 C 0 1 N N N 24.561 12.456 -19.665 3.565 0.868 1.069 C7 HY9 5 HY9 C8 C6 C 0 1 N N N 25.452 10.548 -18.756 1.710 2.289 0.434 C8 HY9 6 HY9 C9 C7 C 0 1 N N N 24.575 9.321 -18.631 2.481 3.144 -0.539 C9 HY9 7 HY9 C10 C8 C 0 1 N N N 28.443 13.026 -17.524 0.563 -4.417 -0.344 C10 HY9 8 HY9 O3 O1 O 0 1 N N N 29.878 9.994 -22.427 -2.457 -1.992 -0.715 O3 HY9 9 HY9 N2 N1 N 0 1 N N N 31.168 11.291 -20.931 -3.133 -0.127 0.279 N2 HY9 10 HY9 C11 C9 C 0 1 N N N 32.195 12.243 -22.991 -4.184 0.537 -1.827 C11 HY9 11 HY9 C12 C10 C 0 1 N N N 33.312 10.397 -21.745 -5.440 0.623 0.309 C12 HY9 12 HY9 C27 C11 C 0 1 N N N 24.524 15.056 -20.261 5.626 -0.535 1.399 C27 HY9 13 HY9 C23 C12 C 0 1 N N N 24.378 13.494 -20.824 4.298 -0.401 0.631 C23 HY9 14 HY9 C24 C13 C 0 1 N N N 23.183 13.422 -21.353 4.661 -0.313 -0.865 C24 HY9 15 HY9 C25 C14 C 0 1 N N N 22.806 14.904 -21.843 6.051 -0.991 -0.960 C25 HY9 16 HY9 C26 C15 C 0 1 N N N 23.767 15.841 -21.055 6.750 -0.523 0.342 C26 HY9 17 HY9 O2 O2 O 0 1 N N N 28.244 10.649 -17.418 -0.232 -2.450 -1.377 O2 HY9 18 HY9 N1 N2 N 0 1 N N N 28.754 11.561 -19.531 -0.351 -2.446 0.838 N1 HY9 19 HY9 C1 C16 C 0 1 N N N 27.430 10.170 -20.988 0.044 -0.119 0.196 C1 HY9 20 HY9 C2 C17 C 0 1 N N S 28.816 10.396 -20.325 -0.931 -1.100 0.849 C2 HY9 21 HY9 N4 N3 N 0 1 N N N 34.720 10.520 -22.024 -6.687 0.749 -0.187 N4 HY9 22 HY9 O4 O3 O 0 1 N N N 24.835 8.387 -17.817 2.234 4.461 -0.617 O4 HY9 23 HY9 N5 N4 N 0 1 N N N 25.162 11.158 -20.032 2.249 0.923 0.418 N5 HY9 24 HY9 O5 O4 O 0 1 N N N 23.580 9.285 -19.406 3.320 2.644 -1.250 O5 HY9 25 HY9 O8 O5 O 0 1 N N N 32.829 9.291 -21.574 -5.161 1.118 1.381 O8 HY9 26 HY9 O9 O6 O 0 1 N N N 35.475 9.374 -22.094 -7.671 1.459 0.542 O9 HY9 27 HY9 H1 H1 H 0 1 N N N 32.963 12.348 -21.035 -4.723 -1.161 -0.616 H1 HY9 28 HY9 H2 H2 H 0 1 N N N 26.933 12.201 -20.449 1.055 0.335 2.044 H2 HY9 29 HY9 H3 H3 H 0 1 N N N 26.054 11.573 -21.884 1.780 -1.002 1.118 H3 HY9 30 HY9 H4 H4 H 0 1 N N N 25.204 12.918 -18.901 3.436 0.859 2.151 H4 HY9 31 HY9 H5 H5 H 0 1 N N N 23.568 12.255 -19.236 4.149 1.742 0.781 H5 HY9 32 HY9 H6 H6 H 0 1 N N N 26.512 10.259 -18.710 1.805 2.706 1.437 H6 HY9 33 HY9 H7 H7 H 0 1 N N N 25.229 11.254 -17.942 0.659 2.269 0.146 H7 HY9 34 HY9 H8 H8 H 0 1 N N N 28.212 12.959 -16.451 0.748 -4.725 -1.373 H8 HY9 35 HY9 H9 H9 H 0 1 N N N 29.427 13.499 -17.659 1.504 -4.411 0.208 H9 HY9 36 HY9 H10 H10 H 0 1 N N N 27.674 13.630 -18.027 -0.129 -5.115 0.126 H10 HY9 37 HY9 H11 H11 H 0 1 N N N 31.119 11.663 -20.004 -2.950 0.581 0.916 H11 HY9 38 HY9 H12 H12 H 0 1 N N N 31.543 13.122 -22.877 -3.426 -0.010 -2.388 H12 HY9 39 HY9 H13 H13 H 0 1 N N N 33.160 12.555 -23.417 -5.121 0.533 -2.382 H13 HY9 40 HY9 H14 H14 H 0 1 N N N 31.715 11.516 -23.663 -3.854 1.565 -1.678 H14 HY9 41 HY9 H15 H15 H 0 1 N N N 25.575 15.376 -20.307 5.747 0.305 2.082 H15 HY9 42 HY9 H16 H16 H 0 1 N N N 24.168 15.116 -19.222 5.644 -1.473 1.953 H16 HY9 43 HY9 H17 H17 H 0 1 N N N 25.175 13.335 -21.565 3.672 -1.275 0.814 H17 HY9 44 HY9 H18 H18 H 0 1 N N N 22.457 13.074 -20.604 3.931 -0.854 -1.467 H18 HY9 45 HY9 H19 H19 H 0 1 N N N 23.188 12.730 -22.208 4.720 0.728 -1.183 H19 HY9 46 HY9 H20 H20 H 0 1 N N N 22.967 15.006 -22.926 5.951 -2.076 -0.975 H20 HY9 47 HY9 H21 H21 H 0 1 N N N 21.757 15.136 -21.605 6.594 -0.639 -1.837 H21 HY9 48 HY9 H22 H22 H 0 1 N N N 24.407 16.399 -21.754 7.148 0.484 0.221 H22 HY9 49 HY9 H23 H23 H 0 1 N N N 23.187 16.548 -20.444 7.543 -1.217 0.620 H23 HY9 50 HY9 H24 H24 H 0 1 N N N 28.929 12.430 -19.994 -0.196 -2.914 1.674 H24 HY9 51 HY9 H25 H25 H 0 1 N N N 26.983 9.276 -20.529 -0.423 0.863 0.124 H25 HY9 52 HY9 H26 H26 H 0 1 N N N 27.599 9.986 -22.059 0.302 -0.473 -0.802 H26 HY9 53 HY9 H27 H27 H 0 1 N N N 29.025 9.526 -19.685 -1.120 -0.794 1.878 H27 HY9 54 HY9 H28 H28 H 0 1 N N N 35.138 11.418 -22.163 -6.910 0.354 -1.044 H28 HY9 55 HY9 H29 H29 H 0 1 N N N 24.180 7.703 -17.899 2.753 4.968 -1.256 H29 HY9 56 HY9 H31 H31 H 0 1 N N N 34.921 8.619 -21.936 -8.533 1.497 0.106 H31 HY9 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HY9 C11 C5 SING N N 1 HY9 O3 C4 DOUB N N 2 HY9 O9 N4 SING N N 3 HY9 N4 C12 SING N N 4 HY9 C25 C24 SING N N 5 HY9 C25 C26 SING N N 6 HY9 C12 C5 SING N N 7 HY9 C12 O8 DOUB N N 8 HY9 C5 N2 SING N N 9 HY9 C24 C23 SING N N 10 HY9 C4 N2 SING N N 11 HY9 C4 C2 SING N N 12 HY9 C26 C27 SING N N 13 HY9 C1 C6 SING N N 14 HY9 C1 C2 SING N N 15 HY9 C6 N5 SING N N 16 HY9 C23 C27 SING N N 17 HY9 C23 C7 SING N N 18 HY9 C2 N1 SING N N 19 HY9 N5 C7 SING N N 20 HY9 N5 C8 SING N N 21 HY9 N1 C3 SING N N 22 HY9 O5 C9 DOUB N N 23 HY9 C8 C9 SING N N 24 HY9 C9 O4 SING N N 25 HY9 C3 C10 SING N N 26 HY9 C3 O2 DOUB N N 27 HY9 C5 H1 SING N N 28 HY9 C6 H2 SING N N 29 HY9 C6 H3 SING N N 30 HY9 C7 H4 SING N N 31 HY9 C7 H5 SING N N 32 HY9 C8 H6 SING N N 33 HY9 C8 H7 SING N N 34 HY9 C10 H8 SING N N 35 HY9 C10 H9 SING N N 36 HY9 C10 H10 SING N N 37 HY9 N2 H11 SING N N 38 HY9 C11 H12 SING N N 39 HY9 C11 H13 SING N N 40 HY9 C11 H14 SING N N 41 HY9 C27 H15 SING N N 42 HY9 C27 H16 SING N N 43 HY9 C23 H17 SING N N 44 HY9 C24 H18 SING N N 45 HY9 C24 H19 SING N N 46 HY9 C25 H20 SING N N 47 HY9 C25 H21 SING N N 48 HY9 C26 H22 SING N N 49 HY9 C26 H23 SING N N 50 HY9 N1 H24 SING N N 51 HY9 C1 H25 SING N N 52 HY9 C1 H26 SING N N 53 HY9 C2 H27 SING N N 54 HY9 N4 H28 SING N N 55 HY9 O4 H29 SING N N 56 HY9 O9 H31 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HY9 InChI InChI 1.03 "InChI=1S/C17H30N4O6/c1-11(16(25)20-27)18-17(26)14(19-12(2)22)7-8-21(10-15(23)24)9-13-5-3-4-6-13/h11,13-14,27H,3-10H2,1-2H3,(H,18,26)(H,19,22)(H,20,25)(H,23,24)/t11-,14+/m1/s1" HY9 InChIKey InChI 1.03 CZUXSTKXXAXBTE-RISCZKNCSA-N HY9 SMILES_CANONICAL CACTVS 3.385 "C[C@@H](NC(=O)[C@H](CCN(CC1CCCC1)CC(O)=O)NC(C)=O)C(=O)NO" HY9 SMILES CACTVS 3.385 "C[CH](NC(=O)[CH](CCN(CC1CCCC1)CC(O)=O)NC(C)=O)C(=O)NO" HY9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@H](C(=O)NO)NC(=O)[C@H](CCN(CC1CCCC1)CC(=O)O)NC(=O)C" HY9 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(=O)NO)NC(=O)C(CCN(CC1CCCC1)CC(=O)O)NC(=O)C" # _pdbx_chem_comp_identifier.comp_id HY9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[[(3~{S})-3-acetamido-4-[[(2~{R})-1-(oxidanylamino)-1-oxidanylidene-propan-2-yl]amino]-4-oxidanylidene-butyl]-(cyclopentylmethyl)amino]ethanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HY9 "Create component" 2021-02-22 PDBJ HY9 "Initial release" 2022-02-23 RCSB ##