data_HYC # _chem_comp.id HYC _chem_comp.name "O5'-[9-(3,17B-DIHYDROXY-1,3,5(10)-ESTRATRIEN-16B-YL)-NONANOYL]ADENOSINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C37 H51 N5 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms EM-1745 _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-03-07 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 677.830 _chem_comp.one_letter_code ? _chem_comp.three_letter_code HYC _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1I5R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HYC C1 C1 C 0 1 Y N N 9.591 11.469 -11.348 12.928 0.551 -0.425 C1 HYC 1 HYC C2 C2 C 0 1 Y N N 8.849 12.267 -12.243 13.790 1.618 -0.568 C2 HYC 2 HYC C3 C3 C 0 1 Y N N 8.484 11.792 -13.507 13.334 2.796 -1.141 C3 HYC 3 HYC O3 O3 O 0 1 N N N 7.808 12.536 -14.307 14.176 3.852 -1.291 O3 HYC 4 HYC C4 C4 C 0 1 Y N N 8.856 10.483 -13.918 12.018 2.891 -1.559 C4 HYC 5 HYC C5 C5 C 0 1 Y N N 9.604 9.640 -13.051 11.150 1.818 -1.410 C5 HYC 6 HYC C6 C6 C 0 1 N N N 9.990 8.206 -13.549 9.730 2.000 -1.878 C6 HYC 7 HYC C7 C7 C 0 1 N N N 11.100 7.501 -12.655 9.005 0.659 -1.987 C7 HYC 8 HYC C8 C8 C 0 1 N N R 10.640 7.727 -11.174 9.248 -0.120 -0.694 C8 HYC 9 HYC C9 C9 C 0 1 N N S 10.792 9.236 -10.787 10.720 -0.552 -0.674 C9 HYC 10 HYC C10 C10 C 0 1 Y N N 9.975 10.141 -11.750 11.596 0.654 -0.859 C10 HYC 11 HYC C11 C11 C 0 1 N N N 10.315 9.450 -9.289 11.062 -1.309 0.601 C11 HYC 12 HYC C12 C12 C 0 1 N N N 11.097 8.555 -8.276 10.127 -2.520 0.783 C12 HYC 13 HYC C13 C13 C 0 1 N N S 11.095 7.054 -8.668 8.703 -2.004 0.787 C13 HYC 14 HYC C14 C14 C 0 1 N N S 11.495 6.871 -10.175 8.413 -1.381 -0.607 C14 HYC 15 HYC C15 C15 C 0 1 N N N 11.450 5.254 -10.425 6.894 -1.179 -0.568 C15 HYC 16 HYC C16 C16 C 0 1 N N S 12.453 4.926 -9.121 6.388 -2.478 0.115 C16 HYC 17 HYC C17 C17 C 0 1 N N S 12.183 6.068 -8.034 7.595 -3.040 0.931 C17 HYC 18 HYC O17 O17 O 0 1 N N N 11.613 5.628 -6.843 7.243 -3.169 2.310 O17 HYC 19 HYC C18 C18 C 0 1 N N N 9.636 6.409 -8.467 8.549 -0.933 1.869 C18 HYC 20 HYC C21 C21 C 0 1 N N N 11.999 3.613 -8.585 5.201 -2.163 1.028 C21 HYC 21 HYC C22 C22 C 0 1 N N N 12.289 2.641 -9.626 4.012 -1.708 0.179 C22 HYC 22 HYC C23 C23 C 0 1 N N N 11.882 1.196 -9.241 2.825 -1.392 1.092 C23 HYC 23 HYC C24 C24 C 0 1 N N N 12.994 0.654 -8.411 1.636 -0.937 0.244 C24 HYC 24 HYC C25 C25 C 0 1 N N N 12.916 -0.805 -8.363 0.449 -0.622 1.156 C25 HYC 25 HYC C26 C26 C 0 1 N N N 14.001 -1.391 -7.548 -0.740 -0.167 0.308 C26 HYC 26 HYC C27 C27 C 0 1 N N N 13.247 -2.197 -6.617 -1.927 0.149 1.220 C27 HYC 27 HYC C28 C28 C 0 1 N N N 14.299 -2.843 -5.724 -3.116 0.604 0.372 C28 HYC 28 HYC C31 C31 C 0 1 N N R 16.225 -6.266 -1.941 -9.663 1.143 -0.161 C31 HYC 29 HYC C32 C32 C 0 1 N N R 16.881 -6.236 -3.282 -10.094 1.594 1.258 C32 HYC 30 HYC O32 O32 O 0 1 N N N 17.503 -7.361 -3.624 -11.325 2.318 1.212 O32 HYC 31 HYC C33 C33 C 0 1 N N S 17.656 -5.018 -3.139 -8.922 2.521 1.675 C33 HYC 32 HYC O33 O33 O 0 1 N N N 18.801 -5.266 -2.684 -9.263 3.890 1.448 O33 HYC 33 HYC C34 C34 C 0 1 N N R 16.882 -4.111 -2.212 -7.760 2.089 0.759 C34 HYC 34 HYC O34 O34 O 0 1 N N N 15.690 -4.935 -1.909 -8.231 0.997 -0.047 O34 HYC 35 HYC C35 C35 C 0 1 N N N 16.248 -2.784 -2.752 -6.571 1.634 1.608 C35 HYC 36 HYC O35 O35 O 0 1 N N N 15.712 -3.252 -4.041 -5.445 1.335 0.742 O35 HYC 37 HYC C36 C36 C 0 1 N N N 14.695 -2.215 -4.475 -4.285 0.914 1.270 C36 HYC 38 HYC O36 O36 O 0 1 N N N 14.247 -1.200 -4.083 -4.178 0.785 2.467 O36 HYC 39 HYC N41 N41 N 0 1 Y N N 14.033 -9.536 1.255 -13.746 -1.263 -2.287 N41 HYC 40 HYC C42 C42 C 0 1 Y N N 15.083 -8.720 1.421 -13.534 0.033 -2.144 C42 HYC 41 HYC N43 N43 N 0 1 Y N N 15.593 -7.887 0.515 -12.445 0.512 -1.581 N43 HYC 42 HYC C44 C44 C 0 1 Y N N 14.960 -7.860 -0.757 -11.503 -0.305 -1.123 C44 HYC 43 HYC C45 C45 C 0 1 Y N N 13.793 -8.726 -1.034 -11.679 -1.693 -1.256 C45 HYC 44 HYC C46 C46 C 0 1 Y N N 13.403 -9.561 0.105 -12.858 -2.157 -1.864 C46 HYC 45 HYC N46 N46 N 0 1 N N N 12.289 -10.384 -0.171 -13.090 -3.512 -2.017 N46 HYC 46 HYC N47 N47 N 0 1 Y N N 13.305 -8.566 -2.329 -10.586 -2.287 -0.721 N47 HYC 47 HYC C48 C48 C 0 1 Y N N 14.203 -7.611 -2.768 -9.767 -1.375 -0.283 C48 HYC 48 HYC N49 N49 N 0 1 Y N N 15.190 -7.152 -1.915 -10.287 -0.136 -0.511 N49 HYC 49 HYC H1 H1 H 0 1 N N N 9.867 11.848 -10.375 13.283 -0.367 0.020 H1 HYC 50 HYC H2 H2 H 0 1 N N N 8.557 13.264 -11.947 14.815 1.536 -0.237 H2 HYC 51 HYC HO3 HO3 H 0 1 N N N 7.641 13.375 -13.895 14.106 4.382 -0.486 HO3 HYC 52 HYC H4 H4 H 0 1 N N N 8.568 10.126 -14.896 11.664 3.809 -2.006 H4 HYC 53 HYC H61 1H6 H 0 1 N N N 10.407 8.314 -14.561 9.735 2.483 -2.855 H61 HYC 54 HYC H62 2H6 H 0 1 N N N 9.085 7.581 -13.528 9.199 2.636 -1.170 H62 HYC 55 HYC H71 1H7 H 0 1 N N N 12.101 7.918 -12.841 9.397 0.096 -2.834 H71 HYC 56 HYC H72 2H7 H 0 1 N N N 11.167 6.428 -12.886 7.937 0.828 -2.119 H72 HYC 57 HYC H8 H8 H 0 1 N N N 9.586 7.418 -11.105 9.040 0.519 0.165 H8 HYC 58 HYC H9 H9 H 0 1 N N N 11.851 9.519 -10.875 10.886 -1.221 -1.519 H9 HYC 59 HYC H111 1H11 H 0 0 N N N 9.253 9.170 -9.233 10.954 -0.641 1.455 H111 HYC 60 HYC H112 2H11 H 0 0 N N N 10.477 10.504 -9.019 12.093 -1.657 0.546 H112 HYC 61 HYC H121 1H12 H 0 0 N N N 10.596 8.643 -7.300 10.343 -3.015 1.729 H121 HYC 62 HYC H122 2H12 H 0 0 N N N 12.140 8.902 -8.241 10.264 -3.220 -0.042 H122 HYC 63 HYC H14 H14 H 0 1 N N N 12.500 7.267 -10.382 8.686 -2.075 -1.402 H14 HYC 64 HYC H151 1H15 H 0 0 N N N 11.738 4.870 -11.415 6.637 -0.304 0.028 H151 HYC 65 HYC H152 2H15 H 0 0 N N N 10.450 4.799 -10.374 6.491 -1.092 -1.577 H152 HYC 66 HYC H161 1H16 H 0 0 N N N 13.521 4.898 -9.382 6.095 -3.209 -0.639 H161 HYC 67 HYC H17 H17 H 0 1 N N N 13.163 6.508 -7.800 7.906 -4.004 0.529 H17 HYC 68 HYC HO7 HO7 H 0 1 N N N 12.291 5.528 -6.185 6.510 -3.798 2.354 HO7 HYC 69 HYC H181 1H18 H 0 0 N N N 9.590 5.439 -8.984 9.300 -0.157 1.722 H181 HYC 70 HYC H182 2H18 H 0 0 N N N 8.876 7.085 -8.886 7.554 -0.492 1.804 H182 HYC 71 HYC H183 3H18 H 0 0 N N N 9.444 6.262 -7.394 8.682 -1.387 2.851 H183 HYC 72 HYC H211 1H21 H 0 0 N N N 10.928 3.628 -8.333 4.926 -3.056 1.589 H211 HYC 73 HYC H212 2H21 H 0 0 N N N 12.537 3.364 -7.658 5.477 -1.369 1.722 H212 HYC 74 HYC H221 1H22 H 0 0 N N N 13.377 2.645 -9.787 4.286 -0.815 -0.381 H221 HYC 75 HYC H222 2H22 H 0 0 N N N 11.731 2.927 -10.530 3.735 -2.502 -0.514 H222 HYC 76 HYC H231 1H23 H 0 0 N N N 11.716 0.578 -10.136 2.550 -2.286 1.653 H231 HYC 77 HYC H232 2H23 H 0 0 N N N 10.941 1.199 -8.671 3.101 -0.598 1.786 H232 HYC 78 HYC H241 1H24 H 0 0 N N N 12.911 1.054 -7.390 1.910 -0.044 -0.317 H241 HYC 79 HYC H242 2H24 H 0 0 N N N 13.956 0.952 -8.853 1.360 -1.731 -0.450 H242 HYC 80 HYC H251 1H25 H 0 0 N N N 13.017 -1.186 -9.390 0.174 -1.515 1.717 H251 HYC 81 HYC H252 2H25 H 0 0 N N N 11.950 -1.091 -7.921 0.725 0.172 1.850 H252 HYC 82 HYC H261 1H26 H 0 0 N N N 14.655 -0.647 -7.070 -0.465 0.726 -0.253 H261 HYC 83 HYC H262 2H26 H 0 0 N N N 14.699 -1.991 -8.150 -1.016 -0.961 -0.386 H262 HYC 84 HYC H271 1H27 H 0 0 N N N 12.622 -2.944 -7.128 -2.201 -0.745 1.781 H271 HYC 85 HYC H272 2H27 H 0 0 N N N 12.554 -1.578 -6.028 -1.651 0.943 1.914 H272 HYC 86 HYC H281 1H28 H 0 0 N N N 15.213 -2.794 -6.333 -2.841 1.497 -0.189 H281 HYC 87 HYC H282 2H28 H 0 0 N N N 13.898 -3.831 -5.452 -3.392 -0.190 -0.322 H282 HYC 88 HYC H31 H31 H 0 1 N N N 16.893 -6.553 -1.115 -9.914 1.906 -0.898 H31 HYC 89 HYC H32 H32 H 0 1 N N N 16.215 -6.205 -4.157 -10.173 0.739 1.931 H32 HYC 90 HYC HO21 1HO2 H 0 0 N N N 17.651 -7.369 -4.562 -11.536 2.569 2.122 HO21 HYC 91 HYC H33 H33 H 0 1 N N N 17.807 -4.533 -4.115 -8.663 2.362 2.721 H33 HYC 92 HYC HO31 1HO3 H 0 0 N N N 19.421 -5.329 -3.401 -10.032 4.082 2.003 HO31 HYC 93 HYC H34 H34 H 0 1 N N N 17.597 -3.793 -1.439 -7.463 2.920 0.120 H34 HYC 94 HYC H351 1H35 H 0 0 N N N 16.950 -1.941 -2.829 -6.846 0.741 2.169 H351 HYC 95 HYC H352 2H35 H 0 0 N N N 15.466 -2.387 -2.087 -6.295 2.428 2.302 H352 HYC 96 HYC H42 H42 H 0 1 N N N 15.565 -8.740 2.387 -14.282 0.724 -2.502 H42 HYC 97 HYC HN41 1HN4 H 0 0 N N N 11.678 -9.915 -0.808 -12.434 -4.155 -1.704 HN41 HYC 98 HYC HN42 2HN4 H 0 0 N N N 11.799 -10.579 0.679 -13.908 -3.820 -2.438 HN42 HYC 99 HYC H48 H48 H 0 1 N N N 14.134 -7.225 -3.774 -8.817 -1.571 0.191 H48 HYC 100 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HYC C1 C2 DOUB Y N 1 HYC C1 C10 SING Y N 2 HYC C1 H1 SING N N 3 HYC C2 C3 SING Y N 4 HYC C2 H2 SING N N 5 HYC C3 O3 SING N N 6 HYC C3 C4 DOUB Y N 7 HYC O3 HO3 SING N N 8 HYC C4 C5 SING Y N 9 HYC C4 H4 SING N N 10 HYC C5 C6 SING N N 11 HYC C5 C10 DOUB Y N 12 HYC C6 C7 SING N N 13 HYC C6 H61 SING N N 14 HYC C6 H62 SING N N 15 HYC C7 C8 SING N N 16 HYC C7 H71 SING N N 17 HYC C7 H72 SING N N 18 HYC C8 C9 SING N N 19 HYC C8 C14 SING N N 20 HYC C8 H8 SING N N 21 HYC C9 C10 SING N N 22 HYC C9 C11 SING N N 23 HYC C9 H9 SING N N 24 HYC C11 C12 SING N N 25 HYC C11 H111 SING N N 26 HYC C11 H112 SING N N 27 HYC C12 C13 SING N N 28 HYC C12 H121 SING N N 29 HYC C12 H122 SING N N 30 HYC C13 C14 SING N N 31 HYC C13 C17 SING N N 32 HYC C13 C18 SING N N 33 HYC C14 C15 SING N N 34 HYC C14 H14 SING N N 35 HYC C15 C16 SING N N 36 HYC C15 H151 SING N N 37 HYC C15 H152 SING N N 38 HYC C16 C17 SING N N 39 HYC C16 C21 SING N N 40 HYC C16 H161 SING N N 41 HYC C17 O17 SING N N 42 HYC C17 H17 SING N N 43 HYC O17 HO7 SING N N 44 HYC C18 H181 SING N N 45 HYC C18 H182 SING N N 46 HYC C18 H183 SING N N 47 HYC C21 C22 SING N N 48 HYC C21 H211 SING N N 49 HYC C21 H212 SING N N 50 HYC C22 C23 SING N N 51 HYC C22 H221 SING N N 52 HYC C22 H222 SING N N 53 HYC C23 C24 SING N N 54 HYC C23 H231 SING N N 55 HYC C23 H232 SING N N 56 HYC C24 C25 SING N N 57 HYC C24 H241 SING N N 58 HYC C24 H242 SING N N 59 HYC C25 C26 SING N N 60 HYC C25 H251 SING N N 61 HYC C25 H252 SING N N 62 HYC C26 C27 SING N N 63 HYC C26 H261 SING N N 64 HYC C26 H262 SING N N 65 HYC C27 C28 SING N N 66 HYC C27 H271 SING N N 67 HYC C27 H272 SING N N 68 HYC C28 C36 SING N N 69 HYC C28 H281 SING N N 70 HYC C28 H282 SING N N 71 HYC C31 C32 SING N N 72 HYC C31 O34 SING N N 73 HYC C31 N49 SING N N 74 HYC C31 H31 SING N N 75 HYC C32 O32 SING N N 76 HYC C32 C33 SING N N 77 HYC C32 H32 SING N N 78 HYC O32 HO21 SING N N 79 HYC C33 O33 SING N N 80 HYC C33 C34 SING N N 81 HYC C33 H33 SING N N 82 HYC O33 HO31 SING N N 83 HYC C34 O34 SING N N 84 HYC C34 C35 SING N N 85 HYC C34 H34 SING N N 86 HYC C35 O35 SING N N 87 HYC C35 H351 SING N N 88 HYC C35 H352 SING N N 89 HYC O35 C36 SING N N 90 HYC C36 O36 DOUB N N 91 HYC N41 C42 DOUB Y N 92 HYC N41 C46 SING Y N 93 HYC C42 N43 SING Y N 94 HYC C42 H42 SING N N 95 HYC N43 C44 DOUB Y N 96 HYC C44 C45 SING Y N 97 HYC C44 N49 SING Y N 98 HYC C45 C46 DOUB Y N 99 HYC C45 N47 SING Y N 100 HYC C46 N46 SING N N 101 HYC N46 HN41 SING N N 102 HYC N46 HN42 SING N N 103 HYC N47 C48 DOUB Y N 104 HYC C48 N49 SING Y N 105 HYC C48 H48 SING N N 106 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HYC SMILES ACDLabs 10.04 "O=C(OCC3OC(n2cnc1c(ncnc12)N)C(O)C3O)CCCCCCCCC6CC5C7CCc4cc(O)ccc4C7CCC5(C)C6O" HYC SMILES_CANONICAL CACTVS 3.341 "C[C@]12CC[C@H]3[C@@H](CCc4cc(O)ccc34)[C@@H]1C[C@H](CCCCCCCCC(=O)OC[C@H]5O[C@H]([C@H](O)[C@@H]5O)n6cnc7c(N)ncnc67)[C@@H]2O" HYC SMILES CACTVS 3.341 "C[C]12CC[CH]3[CH](CCc4cc(O)ccc34)[CH]1C[CH](CCCCCCCCC(=O)OC[CH]5O[CH]([CH](O)[CH]5O)n6cnc7c(N)ncnc67)[CH]2O" HYC SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C[C@]12CC[C@@H]3c4ccc(cc4CC[C@H]3[C@@H]1C[C@@H]([C@@H]2O)CCCCCCCCC(=O)OC[C@@H]5[C@H]([C@H]([C@@H](O5)n6cnc7c6ncnc7N)O)O)O" HYC SMILES "OpenEye OEToolkits" 1.5.0 "CC12CCC3c4ccc(cc4CCC3C1CC(C2O)CCCCCCCCC(=O)OCC5C(C(C(O5)n6cnc7c6ncnc7N)O)O)O" HYC InChI InChI 1.03 "InChI=1S/C37H51N5O7/c1-37-15-14-25-24-13-11-23(43)16-21(24)10-12-26(25)27(37)17-22(33(37)47)8-6-4-2-3-5-7-9-29(44)48-18-28-31(45)32(46)36(49-28)42-20-41-30-34(38)39-19-40-35(30)42/h11,13,16,19-20,22,25-28,31-33,36,43,45-47H,2-10,12,14-15,17-18H2,1H3,(H2,38,39,40)/t22-,25+,26+,27-,28+,31+,32+,33-,36+,37-/m0/s1" HYC InChIKey InChI 1.03 CKSDYJASHNGOOS-KTXOUVACSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HYC "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-{9-[(9beta,13alpha,14beta,16alpha,17alpha)-3,17-dihydroxyestra-1,3,5(10)-trien-16-yl]nonanoyl}adenosine" HYC "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl 9-[(8R,9S,13S,14S,16S,17S)-3,17-dihydroxy-13-methyl-6,7,8,9,11,12,14,15,16,17-decahydrocyclopenta[a]phenanthren-16-yl]nonanoate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HYC "Create component" 2001-03-07 RCSB HYC "Modify descriptor" 2011-06-04 RCSB HYC "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id HYC _pdbx_chem_comp_synonyms.name EM-1745 _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##