data_HYG
#
_chem_comp.id HYG
_chem_comp.name "HYGROMYCIN B"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C20 H37 N3 O13"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "HYGROMIX; ANTIHELMYCIN; HYDROMYCIN B; DESTOMYSIN; ANTIBIOTIC A-396-II"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2000-12-15
_chem_comp.pdbx_modified_date 2020-05-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 527.520
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code HYG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1HNZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
HYG C1 C1 C 0 1 N N S 196.630 92.479 -14.468 -1.876 0.061 3.421 C1 HYG 1
HYG C2 C2 C 0 1 N N R 195.640 91.453 -15.126 -2.218 -0.459 4.819 C2 HYG 2
HYG C3 C3 C 0 1 N N N 194.633 90.921 -14.041 -1.830 0.589 5.863 C3 HYG 3
HYG C4 C4 C 0 1 N N S 195.397 90.236 -12.846 -0.327 0.865 5.774 C4 HYG 4
HYG C5 C5 C 0 1 N N R 196.409 91.225 -12.211 0.013 1.385 4.377 C5 HYG 5
HYG C6 C6 C 0 1 N N R 197.419 91.736 -13.282 -0.374 0.336 3.333 C6 HYG 6
HYG N7 N7 N 0 1 N N N 194.878 92.098 -16.236 -3.660 -0.724 4.904 N7 HYG 7
HYG O8 O8 O 0 1 N N N 197.570 92.997 -15.460 -2.239 -0.918 2.446 O8 HYG 8
HYG N9 N9 N 0 1 N N N 194.404 89.710 -11.785 0.045 1.872 6.776 N9 HYG 9
HYG C10 C10 C 0 1 N N N 194.017 90.663 -10.650 0.394 1.140 8.001 C10 HYG 10
HYG O11 O11 O 0 1 N N N 197.102 90.562 -11.140 1.417 1.643 4.294 O11 HYG 11
HYG C12 C12 C 0 1 N N R 199.042 94.802 -13.200 0.621 0.119 -0.174 C12 HYG 12
HYG C13 C13 C 0 1 N N S 198.145 93.971 -12.309 0.247 -0.319 1.224 C13 HYG 13
HYG O14 O14 O 0 1 N N N 196.756 94.347 -12.596 1.375 -1.016 1.772 O14 HYG 14
HYG C15 C15 C 0 1 N N R 196.383 95.762 -12.392 1.639 -2.201 1.035 C15 HYG 15
HYG C16 C16 C 0 1 N N S 197.432 96.613 -13.198 1.974 -1.912 -0.438 C16 HYG 16
HYG C17 C17 C 0 1 N N S 198.905 96.287 -12.942 0.782 -1.179 -1.019 C17 HYG 17
HYG O18 O18 O 0 1 N N N 198.445 92.568 -12.626 -0.055 0.822 2.027 O18 HYG 18
HYG C19 C19 C 0 1 N N N 194.920 95.977 -12.972 2.821 -2.930 1.676 C19 HYG 19
HYG O20 O20 O 0 1 N N N 194.699 95.130 -14.172 2.499 -3.264 3.028 O20 HYG 20
HYG O21 O21 O 0 1 N N N 197.048 97.529 -14.245 3.143 -1.094 -0.523 O21 HYG 21
HYG O22 O22 O 0 1 N N N 199.855 96.818 -13.871 0.872 -0.659 -2.336 O22 HYG 22
HYG C23 C23 C 0 1 N N R 200.827 95.689 -13.981 0.094 0.559 -2.319 C23 HYG 23
HYG C24 C24 C 0 1 N N R 200.771 95.228 -15.570 0.966 1.723 -2.785 C24 HYG 24
HYG C25 C25 C 0 1 N N R 201.785 94.057 -15.843 1.447 1.446 -4.214 C25 HYG 25
HYG C26 C26 C 0 1 N N R 203.238 94.627 -15.502 0.228 1.139 -5.091 C26 HYG 26
HYG C27 C27 C 0 1 N N S 203.369 95.279 -14.031 -0.575 0.006 -4.450 C27 HYG 27
HYG O28 O28 O 0 1 N N N 202.198 96.104 -13.569 -1.040 0.411 -3.163 O28 HYG 28
HYG O29 O29 O 0 1 N N N 200.400 94.628 -13.063 -0.346 0.810 -0.961 O29 HYG 29
HYG O30 O30 O 0 1 N N N 199.384 94.813 -15.921 0.204 2.932 -2.763 O30 HYG 30
HYG O31 O31 O 0 1 N N N 201.448 92.945 -14.974 2.128 2.594 -4.725 O31 HYG 31
HYG O32 O32 O 0 1 N N N 203.529 95.692 -16.446 0.661 0.741 -6.393 O32 HYG 32
HYG C33 C33 C 0 1 N N S 203.881 94.181 -12.973 -1.771 -0.334 -5.340 C33 HYG 33
HYG C34 C34 C 0 1 N N N 203.071 94.133 -11.649 -2.572 -1.472 -4.705 C34 HYG 34
HYG O35 O35 O 0 1 N N N 201.999 93.211 -11.804 -3.690 -1.790 -5.537 O35 HYG 35
HYG N36 N36 N 0 1 N N N 205.327 94.458 -12.629 -1.293 -0.751 -6.665 N36 HYG 36
HYG H1 H1 H 0 1 N N N 196.057 93.344 -14.059 -2.427 0.982 3.232 H1 HYG 37
HYG H2 H2 H 0 1 N N N 196.231 90.603 -15.541 -1.668 -1.381 5.008 H2 HYG 38
HYG H31A 1H3 H 0 0 N N N 193.950 91.727 -13.683 -2.073 0.219 6.858 H31A HYG 39
HYG H32A 2H3 H 0 0 N N N 193.871 90.238 -14.486 -2.380 1.511 5.674 H32A HYG 40
HYG H4 H4 H 0 1 N N N 195.963 89.363 -13.247 0.222 -0.056 5.963 H4 HYG 41
HYG H5 H5 H 0 1 N N N 195.861 92.108 -11.807 -0.536 2.307 4.188 H5 HYG 42
HYG H6 H6 H 0 1 N N N 197.958 90.886 -13.761 0.175 -0.585 3.522 H6 HYG 43
HYG H71 1H7 H 0 1 N N N 194.234 91.431 -16.663 -3.839 -1.063 5.837 H71 HYG 44
HYG H72 2H7 H 0 1 N N N 195.498 92.521 -16.925 -4.124 0.168 4.827 H72 HYG 45
HYG H8 H8 H 0 1 N N N 198.169 93.617 -15.061 -3.191 -1.063 2.536 H8 HYG 46
HYG H9 H9 H 0 1 N N N 194.761 88.840 -11.389 -0.790 2.399 6.982 H9 HYG 47
HYG H101 1H10 H 0 0 N N N 193.300 90.283 -9.884 0.680 1.848 8.779 H101 HYG 48
HYG H102 2H10 H 0 0 N N N 194.940 91.028 -10.143 -0.465 0.560 8.336 H102 HYG 49
HYG H103 3H10 H 0 0 N N N 193.626 91.613 -11.082 1.228 0.469 7.797 H103 HYG 50
HYG H11 H11 H 0 1 N N N 197.721 91.167 -10.751 1.619 2.307 4.967 H11 HYG 51
HYG H12 H12 H 0 1 N N N 198.689 94.447 -14.196 1.560 0.672 -0.163 H12 HYG 52
HYG H13 H13 H 0 1 N N N 198.308 94.133 -11.218 -0.615 -0.984 1.185 H13 HYG 53
HYG H15 H15 H 0 1 N N N 196.384 96.059 -11.317 0.761 -2.846 1.078 H15 HYG 54
HYG H16 H16 H 0 1 N N N 197.180 97.627 -12.808 2.135 -2.847 -0.974 H16 HYG 55
HYG H17 H17 H 0 1 N N N 199.119 96.695 -11.926 -0.112 -1.794 -0.924 H17 HYG 56
HYG H191 1H19 H 0 0 N N N 194.138 95.804 -12.195 3.032 -3.842 1.118 H191 HYG 57
HYG H192 2H19 H 0 0 N N N 194.713 97.052 -13.182 3.699 -2.284 1.661 H192 HYG 58
HYG H20 H20 H 0 1 N N N 193.824 95.258 -14.518 3.268 -3.721 3.394 H20 HYG 59
HYG H21 H21 H 0 1 N N N 197.681 98.043 -14.731 3.860 -1.587 -0.102 H21 HYG 60
HYG H24 H24 H 0 1 N N N 201.064 96.092 -16.209 1.826 1.822 -2.123 H24 HYG 61
HYG H25 H25 H 0 1 N N N 201.750 93.698 -16.898 2.122 0.590 -4.214 H25 HYG 62
HYG H26 H26 H 0 1 N N N 203.936 93.759 -15.555 -0.396 2.029 -5.171 H26 HYG 63
HYG H27 H27 H 0 1 N N N 204.157 96.063 -14.109 0.060 -0.873 -4.344 H27 HYG 64
HYG H30 H30 H 0 1 N N N 199.351 94.548 -16.832 0.790 3.637 -3.070 H30 HYG 65
HYG H31 H31 H 0 1 N N N 202.060 92.237 -15.138 2.401 2.378 -5.628 H31 HYG 66
HYG H32 H32 H 0 1 N N N 204.393 96.030 -16.243 1.162 1.482 -6.760 H32 HYG 67
HYG H33 H33 H 0 1 N N N 203.743 93.193 -13.472 -2.408 0.544 -5.444 H33 HYG 68
HYG H341 1H34 H 0 0 N N N 203.710 93.899 -10.765 -1.935 -2.351 -4.601 H341 HYG 69
HYG H342 2H34 H 0 0 N N N 202.723 95.141 -11.324 -2.927 -1.163 -3.722 H342 HYG 70
HYG H35 H35 H 0 1 N N N 201.503 93.181 -10.994 -4.166 -2.510 -5.101 H35 HYG 71
HYG H361 1H36 H 0 0 N N N 205.651 93.761 -11.958 -0.711 -1.562 -6.520 H361 HYG 72
HYG H362 2H36 H 0 0 N N N 205.470 95.411 -12.297 -2.102 -1.063 -7.180 H362 HYG 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
HYG C1 C2 SING N N 1
HYG C1 C6 SING N N 2
HYG C1 O8 SING N N 3
HYG C1 H1 SING N N 4
HYG C2 C3 SING N N 5
HYG C2 N7 SING N N 6
HYG C2 H2 SING N N 7
HYG C3 C4 SING N N 8
HYG C3 H31A SING N N 9
HYG C3 H32A SING N N 10
HYG C4 C5 SING N N 11
HYG C4 N9 SING N N 12
HYG C4 H4 SING N N 13
HYG C5 C6 SING N N 14
HYG C5 O11 SING N N 15
HYG C5 H5 SING N N 16
HYG C6 O18 SING N N 17
HYG C6 H6 SING N N 18
HYG N7 H71 SING N N 19
HYG N7 H72 SING N N 20
HYG O8 H8 SING N N 21
HYG N9 C10 SING N N 22
HYG N9 H9 SING N N 23
HYG C10 H101 SING N N 24
HYG C10 H102 SING N N 25
HYG C10 H103 SING N N 26
HYG O11 H11 SING N N 27
HYG C12 C13 SING N N 28
HYG C12 C17 SING N N 29
HYG C12 O29 SING N N 30
HYG C12 H12 SING N N 31
HYG C13 O14 SING N N 32
HYG C13 O18 SING N N 33
HYG C13 H13 SING N N 34
HYG O14 C15 SING N N 35
HYG C15 C16 SING N N 36
HYG C15 C19 SING N N 37
HYG C15 H15 SING N N 38
HYG C16 C17 SING N N 39
HYG C16 O21 SING N N 40
HYG C16 H16 SING N N 41
HYG C17 O22 SING N N 42
HYG C17 H17 SING N N 43
HYG C19 O20 SING N N 44
HYG C19 H191 SING N N 45
HYG C19 H192 SING N N 46
HYG O20 H20 SING N N 47
HYG O21 H21 SING N N 48
HYG O22 C23 SING N N 49
HYG C23 C24 SING N N 50
HYG C23 O28 SING N N 51
HYG C23 O29 SING N N 52
HYG C24 C25 SING N N 53
HYG C24 O30 SING N N 54
HYG C24 H24 SING N N 55
HYG C25 C26 SING N N 56
HYG C25 O31 SING N N 57
HYG C25 H25 SING N N 58
HYG C26 C27 SING N N 59
HYG C26 O32 SING N N 60
HYG C26 H26 SING N N 61
HYG C27 O28 SING N N 62
HYG C27 C33 SING N N 63
HYG C27 H27 SING N N 64
HYG O30 H30 SING N N 65
HYG O31 H31 SING N N 66
HYG O32 H32 SING N N 67
HYG C33 C34 SING N N 68
HYG C33 N36 SING N N 69
HYG C33 H33 SING N N 70
HYG C34 O35 SING N N 71
HYG C34 H341 SING N N 72
HYG C34 H342 SING N N 73
HYG O35 H35 SING N N 74
HYG N36 H361 SING N N 75
HYG N36 H362 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
HYG SMILES ACDLabs 10.04 "O1C4C(OC12OC(C(O)C(O)C2O)C(N)CO)C(O)C(OC4OC3C(O)C(N)CC(NC)C3O)CO"
HYG SMILES_CANONICAL CACTVS 3.341 "CN[C@H]1C[C@@H](N)[C@H](O)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@@H]3O[C@@]4(O[C@@H]([C@@H](N)CO)[C@H](O)[C@@H](O)[C@H]4O)O[C@@H]23)[C@@H]1O"
HYG SMILES CACTVS 3.341 "CN[CH]1C[CH](N)[CH](O)[CH](O[CH]2O[CH](CO)[CH](O)[CH]3O[C]4(O[CH]([CH](N)CO)[CH](O)[CH](O)[CH]4O)O[CH]23)[CH]1O"
HYG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CN[C@H]1C[C@H]([C@@H]([C@H]([C@@H]1O)O[C@H]2[C@H]3[C@H](C([C@H](O2)CO)O)O[C@@]4(O3)[C@@H]([C@@H]([C@H]([C@@H](O4)[C@H](CO)N)O)O)O)O)N"
HYG SMILES "OpenEye OEToolkits" 1.5.0 "CNC1CC(C(C(C1O)OC2C3C(C(C(O2)CO)O)OC4(O3)C(C(C(C(O4)C(CO)N)O)O)O)O)N"
HYG InChI InChI 1.03 "InChI=1S/C20H37N3O13/c1-23-7-2-5(21)9(26)15(10(7)27)33-19-17-16(11(28)8(4-25)32-19)35-20(36-17)18(31)13(30)12(29)14(34-20)6(22)3-24/h5-19,23-31H,2-4,21-22H2,1H3/t5-,6+,7+,8-,9+,10-,11+,12-,13-,14+,15-,16+,17-,18-,19+,20-/m1/s1"
HYG InChIKey InChI 1.03 GRRNUXAQVGOGFE-WRWUMOMGSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
HYG "SYSTEMATIC NAME" ACDLabs 10.04
;(2R,3'R,3aR,4S,4'R,5'R,6R,6'S,7S,7aS)-4-{[(1R,2S,3R,5S,6R)-3-amino-2,6-dihydroxy-5-(methylamino)cyclohexyl]oxy}-6'-[(1S)-1-amino-2-hydroxyethyl]-6-(hydroxymethyl)octahydro-4H-spiro[1,3-dioxolo[4,5-c]pyran-2,2'-pyran]-3',4',5',7-tetrol (non-preferred name)
;
HYG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R,3'R,3aR,4S,4'R,5'R,6R,6'S,7aS)-4-[(1R,2S,3R,5S,6R)-3-amino-2,6-dihydroxy-5-methylamino-cyclohexyl]oxy-6'-[(1S)-1-amino-2-hydroxy-ethyl]-6-(hydroxymethyl)spiro[4,6,7,7a-tetrahydro-3aH-[1,3]dioxolo[4,5-d]pyran-2,2'-oxane]-3',4',5',7-tetrol"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
HYG "Create component" 2000-12-15 RCSB
HYG "Modify descriptor" 2011-06-04 RCSB
HYG "Modify synonyms" 2020-05-27 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 HYG HYGROMIX ? ?
2 HYG ANTIHELMYCIN ? ?
3 HYG "HYDROMYCIN B" ? ?
4 HYG DESTOMYSIN ? ?
5 HYG "ANTIBIOTIC A-396-II" ? ?
#