data_HYP # _chem_comp.id HYP _chem_comp.name 4-HYDROXYPROLINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H9 N O3" _chem_comp.mon_nstd_parent_comp_id PRO _chem_comp.pdbx_synonyms HYDROXYPROLINE _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 131.130 _chem_comp.one_letter_code P _chem_comp.three_letter_code HYP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal HYP N N N 0 1 N N N Y Y N -3.366 16.585 44.188 0.168 1.360 -0.282 N HYP 1 HYP CA CA C 0 1 N N S Y N N -2.955 15.768 43.044 -0.384 -0.003 -0.493 CA HYP 2 HYP C C C 0 1 N N N Y N Y -1.447 15.609 43.030 -1.811 -0.072 -0.013 C HYP 3 HYP O O O 0 1 N N N Y N Y -0.722 16.484 43.503 -2.233 0.764 0.750 O HYP 4 HYP CB CB C 0 1 N N N N N N -3.408 16.578 41.829 0.515 -0.924 0.359 CB HYP 5 HYP CG CG C 0 1 N N R N N N -4.437 17.482 42.330 1.847 -0.159 0.505 CG HYP 6 HYP CD CD C 0 1 N N N N N N -4.068 17.803 43.753 1.640 1.159 -0.271 CD HYP 7 HYP OD1 OD O 0 1 N N N N N N -5.693 16.815 42.294 2.917 -0.911 -0.071 OD1 HYP 8 HYP OXT OXT O 0 1 N Y N Y N Y -0.976 14.502 42.469 -2.614 -1.063 -0.433 OXT HYP 9 HYP H H H 0 1 N Y N Y Y N -3.980 16.047 44.765 -0.107 1.981 -1.028 H HYP 10 HYP HA HA H 0 1 N N N Y N N -3.385 14.756 43.068 -0.325 -0.278 -1.546 HA HYP 11 HYP HB2 1HB H 0 1 N N N N N N -2.567 17.141 41.398 0.066 -1.092 1.337 HB2 HYP 12 HYP HB3 2HB H 0 1 N N N N N N -3.790 15.930 41.026 0.678 -1.873 -0.153 HB3 HYP 13 HYP HG HG H 0 1 N N N N N N -4.508 18.399 41.726 2.052 0.048 1.555 HG HYP 14 HYP HD22 1HD H 0 0 N N N N N N -4.956 18.005 44.370 2.018 1.065 -1.289 HD22 HYP 15 HYP HD23 2HD H 0 0 N N N N N N -3.457 18.713 43.848 2.132 1.985 0.243 HD23 HYP 16 HYP HD1 HOD H 0 1 N N N N N N -5.999 16.666 43.181 3.780 -0.479 -0.009 HD1 HYP 17 HYP HXT HXT H 0 1 N Y N Y N Y -0.027 14.511 42.499 -3.520 -1.066 -0.098 HXT HYP 18 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal HYP N CA SING N N 1 HYP N CD SING N N 2 HYP N H SING N N 3 HYP CA C SING N N 4 HYP CA CB SING N N 5 HYP CA HA SING N N 6 HYP C O DOUB N N 7 HYP C OXT SING N N 8 HYP CB CG SING N N 9 HYP CB HB2 SING N N 10 HYP CB HB3 SING N N 11 HYP CG CD SING N N 12 HYP CG OD1 SING N N 13 HYP CG HG SING N N 14 HYP CD HD22 SING N N 15 HYP CD HD23 SING N N 16 HYP OD1 HD1 SING N N 17 HYP OXT HXT SING N N 18 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor HYP SMILES ACDLabs 10.04 "O=C(O)C1NCC(O)C1" HYP SMILES_CANONICAL CACTVS 3.341 "O[C@H]1CN[C@@H](C1)C(O)=O" HYP SMILES CACTVS 3.341 "O[CH]1CN[CH](C1)C(O)=O" HYP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@H](CN[C@@H]1C(=O)O)O" HYP SMILES "OpenEye OEToolkits" 1.5.0 "C1C(CNC1C(=O)O)O" HYP InChI InChI 1.03 "InChI=1S/C5H9NO3/c7-3-1-4(5(8)9)6-2-3/h3-4,6-7H,1-2H2,(H,8,9)/t3-,4+/m1/s1" HYP InChIKey InChI 1.03 PMMYEEVYMWASQN-DMTCNVIQSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier HYP "SYSTEMATIC NAME" ACDLabs 10.04 "(4R)-4-hydroxy-L-proline" HYP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,4R)-4-hydroxypyrrolidine-2-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site HYP "Create component" 1999-07-08 PDBJ HYP "Modify descriptor" 2011-06-04 RCSB HYP "Modify synonyms" 2021-03-01 PDBE HYP "Modify backbone" 2023-11-03 PDBE HYP "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id HYP _pdbx_chem_comp_synonyms.name HYDROXYPROLINE _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id HYP _pdbx_chem_comp_pcm.modified_residue_id PRO _pdbx_chem_comp_pcm.type Hydroxylation _pdbx_chem_comp_pcm.category "Named protein modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession PTM-0043 _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession PTM-0149 #