data_I0Z # _chem_comp.id I0Z _chem_comp.name "1,3-dimethyl-5-[1-[[(3~{S})-1-(1-propan-2-ylpiperidin-4-yl)carbonylpiperidin-3-yl]methyl]benzimidazol-2-yl]pyridin-2-one" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H39 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-25 _chem_comp.pdbx_modified_date 2023-10-13 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 489.652 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I0Z _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PXA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I0Z N1 N1 N 0 1 N N N 13.766 1.503 5.275 -1.492 -1.173 -1.125 N1 I0Z 1 I0Z N3 N2 N 0 1 Y N N 14.188 0.270 11.909 4.761 -0.239 1.066 N3 I0Z 2 I0Z C4 C1 C 0 1 N N N 14.905 4.290 3.124 -3.925 -0.180 0.886 C4 I0Z 3 I0Z C5 C2 C 0 1 N N N 14.832 3.574 4.476 -3.846 -0.661 -0.566 C5 I0Z 4 I0Z C6 C3 C 0 1 N N N 14.651 4.606 5.596 -4.961 0.005 -1.377 C6 I0Z 5 I0Z C7 C4 C 0 1 N N N 15.727 5.683 5.507 -6.314 -0.328 -0.745 C7 I0Z 6 I0Z C8 C5 C 0 1 N N N 13.682 2.585 4.474 -2.507 -0.288 -1.148 C8 I0Z 7 I0Z C10 C6 C 0 1 N N N 12.271 0.038 6.596 -0.490 -2.622 0.564 C10 I0Z 8 I0Z C13 C7 C 0 1 N N N 15.578 0.702 8.537 2.266 -0.857 -1.466 C13 I0Z 9 I0Z C15 C8 C 0 1 Y N N 14.811 -0.957 11.682 5.000 -1.558 0.862 C15 I0Z 10 I0Z C17 C9 C 0 1 Y N N 15.590 -3.190 12.041 5.909 -3.776 0.994 C17 I0Z 11 I0Z C20 C10 C 0 1 Y N N 15.441 -0.961 10.443 4.098 -1.997 -0.123 C20 I0Z 12 I0Z C21 C11 C 0 1 N N N 13.980 2.379 10.764 3.249 1.533 0.226 C21 I0Z 13 I0Z C22 C12 C 0 1 N N N 14.694 3.404 10.068 3.197 2.226 -1.006 C22 I0Z 14 I0Z C24 C13 C 0 1 N N N 15.015 5.765 9.306 2.623 4.253 -2.330 C24 I0Z 15 I0Z C26 C14 C 0 1 N N N 11.144 4.380 12.072 1.812 4.034 2.552 C26 I0Z 16 I0Z C28 C15 C 0 1 N N N 14.885 1.211 6.172 -0.214 -0.865 -1.782 C28 I0Z 17 I0Z O1 O1 O 0 1 N N N 12.485 6.141 10.546 1.782 5.211 0.143 O1 I0Z 18 I0Z C25 C16 C 0 1 N N N 13.012 5.038 10.644 2.235 4.078 0.161 C25 I0Z 19 I0Z C23 C17 C 0 1 N N N 14.254 4.678 9.997 2.692 3.490 -1.033 C23 I0Z 20 I0Z N4 N3 N 0 1 N N N 12.365 4.020 11.353 2.294 3.401 1.322 N4 I0Z 21 I0Z C27 C18 C 0 1 N N N 12.836 2.739 11.397 2.791 2.148 1.370 C27 I0Z 22 I0Z C14 C19 C 0 1 Y N N 14.447 0.982 10.829 3.786 0.158 0.283 C14 I0Z 23 I0Z C19 C20 C 0 1 Y N N 16.159 -2.056 9.982 4.114 -3.321 -0.536 C19 I0Z 24 I0Z C18 C21 C 0 1 Y N N 16.229 -3.172 10.806 5.016 -4.203 0.022 C18 I0Z 25 I0Z C16 C22 C 0 1 Y N N 14.877 -2.089 12.493 5.908 -2.466 1.417 C16 I0Z 26 I0Z N2 N4 N 0 1 Y N N 15.180 0.291 9.889 3.342 -0.894 -0.472 N2 I0Z 27 I0Z C12 C23 C 0 1 N N S 14.426 0.907 7.591 0.918 -1.042 -0.766 C12 I0Z 28 I0Z C11 C24 C 0 1 N N N 13.421 -0.239 7.558 0.844 -2.447 -0.164 C11 I0Z 29 I0Z C9 C25 C 0 1 N N N 12.783 0.413 5.218 -1.639 -2.463 -0.437 C9 I0Z 30 I0Z O O2 O 0 1 N N N 12.718 2.764 3.754 -2.343 0.810 -1.637 O I0Z 31 I0Z C3 C26 C 0 1 N N N 15.981 5.363 3.150 -5.309 -0.508 1.452 C3 I0Z 32 I0Z N N5 N 0 1 N N N 15.709 6.356 4.199 -6.340 0.153 0.642 N I0Z 33 I0Z C1 C27 C 0 1 N N N 16.528 7.579 4.078 -7.671 -0.026 1.237 C1 I0Z 34 I0Z C2 C28 C 0 1 N N N 17.954 7.375 4.566 -8.699 0.778 0.437 C2 I0Z 35 I0Z C C29 C 0 1 N N N 15.857 8.787 4.710 -8.048 -1.508 1.207 C I0Z 36 I0Z H11 H1 H 0 1 N N N 13.933 4.757 2.908 -3.161 -0.684 1.478 H11 I0Z 37 I0Z H10 H2 H 0 1 N N N 15.142 3.558 2.338 -3.763 0.897 0.922 H10 I0Z 38 I0Z H12 H3 H 0 1 N N N 15.774 3.030 4.642 -3.968 -1.744 -0.598 H12 I0Z 39 I0Z H14 H4 H 0 1 N N N 13.660 5.075 5.500 -4.815 1.086 -1.377 H14 I0Z 40 I0Z H13 H5 H 0 1 N N N 14.724 4.100 6.570 -4.936 -0.365 -2.402 H13 I0Z 41 I0Z H16 H6 H 0 1 N N N 15.552 6.430 6.296 -7.109 0.157 -1.312 H16 I0Z 42 I0Z H15 H7 H 0 1 N N N 16.712 5.217 5.656 -6.465 -1.407 -0.758 H15 I0Z 43 I0Z H19 H8 H 0 1 N N N 11.665 0.867 6.991 -0.533 -3.615 1.012 H19 I0Z 44 I0Z H20 H9 H 0 1 N N N 11.648 -0.865 6.513 -0.580 -1.867 1.345 H20 I0Z 45 I0Z H24 H10 H 0 1 N N N 16.234 -0.076 8.119 2.279 0.105 -1.980 H24 I0Z 46 I0Z H23 H11 H 0 1 N N N 16.134 1.648 8.614 2.412 -1.658 -2.190 H23 I0Z 47 I0Z H26 H12 H 0 1 N N N 15.650 -4.075 12.658 6.609 -4.477 1.424 H26 I0Z 48 I0Z H29 H13 H 0 1 N N N 15.623 3.148 9.580 3.552 1.759 -1.913 H29 I0Z 49 I0Z H31 H14 H 0 1 N N N 14.457 6.710 9.382 1.667 4.058 -2.816 H31 I0Z 50 I0Z H32 H15 H 0 1 N N N 16.000 5.882 9.781 2.718 5.320 -2.130 H32 I0Z 51 I0Z H30 H16 H 0 1 N N N 15.148 5.502 8.246 3.434 3.932 -2.984 H30 I0Z 52 I0Z H34 H17 H 0 1 N N N 10.743 3.492 12.582 1.449 5.036 2.326 H34 I0Z 53 I0Z H35 H18 H 0 1 N N N 11.372 5.157 12.816 1.000 3.440 2.972 H35 I0Z 54 I0Z H33 H19 H 0 1 N N N 10.398 4.762 11.359 2.628 4.096 3.272 H33 I0Z 55 I0Z H37 H20 H 0 1 N N N 15.555 2.083 6.196 -0.062 -1.544 -2.621 H37 I0Z 56 I0Z H38 H21 H 0 1 N N N 15.432 0.339 5.783 -0.227 0.164 -2.140 H38 I0Z 57 I0Z H36 H22 H 0 1 N N N 12.283 1.994 11.950 2.829 1.622 2.313 H36 I0Z 58 I0Z H28 H23 H 0 1 N N N 16.645 -2.041 9.018 3.422 -3.661 -1.292 H28 I0Z 59 I0Z H27 H24 H 0 1 N N N 16.788 -4.038 10.483 5.028 -5.234 -0.301 H27 I0Z 60 I0Z H25 H25 H 0 1 N N N 14.383 -2.108 13.453 6.606 -2.140 2.174 H25 I0Z 61 I0Z H H26 H 0 1 N N N 13.879 1.795 7.942 0.815 -0.301 0.027 H I0Z 62 I0Z H22 H27 H 0 1 N N N 13.012 -0.382 8.569 1.664 -2.584 0.541 H22 I0Z 63 I0Z H21 H28 H 0 1 N N N 13.938 -1.156 7.239 0.923 -3.188 -0.961 H21 I0Z 64 I0Z H18 H29 H 0 1 N N N 11.933 0.733 4.598 -2.591 -2.488 0.093 H18 I0Z 65 I0Z H17 H30 H 0 1 N N N 13.257 -0.469 4.763 -1.603 -3.273 -1.166 H17 I0Z 66 I0Z H9 H31 H 0 1 N N N 16.008 5.869 2.174 -5.464 -1.587 1.429 H9 I0Z 67 I0Z H8 H32 H 0 1 N N N 16.955 4.891 3.345 -5.373 -0.154 2.481 H8 I0Z 68 I0Z H4 H34 H 0 1 N N N 16.603 7.800 3.003 -7.658 0.326 2.269 H4 I0Z 69 I0Z H6 H35 H 0 1 N N N 18.387 6.490 4.076 -8.712 0.427 -0.595 H6 I0Z 70 I0Z H7 H36 H 0 1 N N N 18.556 8.262 4.319 -9.687 0.645 0.878 H7 I0Z 71 I0Z H5 H37 H 0 1 N N N 17.951 7.226 5.656 -8.430 1.834 0.458 H5 I0Z 72 I0Z H2 H38 H 0 1 N N N 14.833 8.884 4.321 -8.061 -1.859 0.176 H2 I0Z 73 I0Z H1 H39 H 0 1 N N N 15.824 8.658 5.802 -7.316 -2.081 1.777 H1 I0Z 74 I0Z H3 H40 H 0 1 N N N 16.429 9.694 4.465 -9.036 -1.641 1.649 H3 I0Z 75 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I0Z C C1 SING N N 1 I0Z C2 C1 SING N N 2 I0Z C1 N SING N N 3 I0Z N C3 SING N N 4 I0Z C3 C4 SING N N 5 I0Z C4 C5 SING N N 6 I0Z C6 C5 SING N N 7 I0Z C7 C6 SING N N 8 I0Z N C7 SING N N 9 I0Z C5 C8 SING N N 10 I0Z O C8 DOUB N N 11 I0Z C8 N1 SING N N 12 I0Z N1 C9 SING N N 13 I0Z C9 C10 SING N N 14 I0Z C10 C11 SING N N 15 I0Z C11 C12 SING N N 16 I0Z C12 C13 SING N N 17 I0Z C13 N2 SING N N 18 I0Z N2 C14 SING Y N 19 I0Z N3 C14 DOUB Y N 20 I0Z C15 N3 SING Y N 21 I0Z C15 C16 DOUB Y N 22 I0Z C16 C17 SING Y N 23 I0Z C17 C18 DOUB Y N 24 I0Z C18 C19 SING Y N 25 I0Z C19 C20 DOUB Y N 26 I0Z N2 C20 SING Y N 27 I0Z C20 C15 SING Y N 28 I0Z C14 C21 SING N N 29 I0Z C21 C22 SING N N 30 I0Z C22 C23 DOUB N N 31 I0Z C24 C23 SING N N 32 I0Z C23 C25 SING N N 33 I0Z C25 O1 DOUB N N 34 I0Z N4 C25 SING N N 35 I0Z C26 N4 SING N N 36 I0Z C27 N4 SING N N 37 I0Z C21 C27 DOUB N N 38 I0Z C28 C12 SING N N 39 I0Z N1 C28 SING N N 40 I0Z C4 H11 SING N N 41 I0Z C4 H10 SING N N 42 I0Z C5 H12 SING N N 43 I0Z C6 H14 SING N N 44 I0Z C6 H13 SING N N 45 I0Z C7 H16 SING N N 46 I0Z C7 H15 SING N N 47 I0Z C10 H19 SING N N 48 I0Z C10 H20 SING N N 49 I0Z C13 H24 SING N N 50 I0Z C13 H23 SING N N 51 I0Z C17 H26 SING N N 52 I0Z C22 H29 SING N N 53 I0Z C24 H31 SING N N 54 I0Z C24 H32 SING N N 55 I0Z C24 H30 SING N N 56 I0Z C26 H34 SING N N 57 I0Z C26 H35 SING N N 58 I0Z C26 H33 SING N N 59 I0Z C28 H37 SING N N 60 I0Z C28 H38 SING N N 61 I0Z C27 H36 SING N N 62 I0Z C19 H28 SING N N 63 I0Z C18 H27 SING N N 64 I0Z C16 H25 SING N N 65 I0Z C12 H SING N N 66 I0Z C11 H22 SING N N 67 I0Z C11 H21 SING N N 68 I0Z C9 H18 SING N N 69 I0Z C9 H17 SING N N 70 I0Z C3 H9 SING N N 71 I0Z C3 H8 SING N N 72 I0Z C1 H4 SING N N 73 I0Z C2 H6 SING N N 74 I0Z C2 H7 SING N N 75 I0Z C2 H5 SING N N 76 I0Z C H2 SING N N 77 I0Z C H1 SING N N 78 I0Z C H3 SING N N 79 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I0Z InChI InChI 1.06 "InChI=1S/C29H39N5O2/c1-20(2)32-14-11-23(12-15-32)29(36)33-13-7-8-22(17-33)18-34-26-10-6-5-9-25(26)30-27(34)24-16-21(3)28(35)31(4)19-24/h5-6,9-10,16,19-20,22-23H,7-8,11-15,17-18H2,1-4H3/t22-/m1/s1" I0Z InChIKey InChI 1.06 WSHVXKCBHNIVJO-JOCHJYFZSA-N I0Z SMILES_CANONICAL CACTVS 3.385 "CC(C)N1CCC(CC1)C(=O)N2CCC[C@H](C2)Cn3c4ccccc4nc3C5=CN(C)C(=O)C(=C5)C" I0Z SMILES CACTVS 3.385 "CC(C)N1CCC(CC1)C(=O)N2CCC[CH](C2)Cn3c4ccccc4nc3C5=CN(C)C(=O)C(=C5)C" I0Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=CC(=CN(C1=O)C)c2nc3ccccc3n2C[C@@H]4CCCN(C4)C(=O)C5CCN(CC5)C(C)C" I0Z SMILES "OpenEye OEToolkits" 2.0.7 "CC1=CC(=CN(C1=O)C)c2nc3ccccc3n2CC4CCCN(C4)C(=O)C5CCN(CC5)C(C)C" # _pdbx_chem_comp_identifier.comp_id I0Z _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1,3-dimethyl-5-[1-[[(3~{S})-1-(1-propan-2-ylpiperidin-4-yl)carbonylpiperidin-3-yl]methyl]benzimidazol-2-yl]pyridin-2-one" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I0Z "Create component" 2023-07-25 PDBE I0Z "Initial release" 2023-10-18 RCSB #