data_I12
#
_chem_comp.id I12
_chem_comp.name "N-[(5-METHYLISOXAZOL-3-YL)CARBONYL]-L-ALANYL-L-VALYL-N~1~-((1S)-4-ETHOXY-4-OXO-1-{[(3S)-2-OXOPYRROLIDIN-3-YL]METHYL}BUT-2-ENYL)-L-LEUCINAMIDE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H46 N6 O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "(E)-(S)-4-[(S)-4-METHYL-2-((S)-3-METHYL-2{(S)-2-[(5-METHYL-ISOXAZOLE-3- CARBONYL)-AMINO]-PROPIONYLAMINO}-BUTYRYLAMINO)-PENTANOYLAMINO]-5-((S)-2- OXO-PYRROLIDIN-3-YL)-PENT-2-ENOIC ACID ETHYL ESTER"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2004-08-30
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 618.722
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I12
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1WOF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I12 N1 N1 N 0 1 Y N N N N N 100.619 7.179 -3.575 -9.520 0.454 -1.620 N1 I12 1
I12 C1 C1 C 0 1 Y N N N N N 99.416 7.045 -3.105 -9.532 -0.019 -0.398 C1 I12 2
I12 C2 C2 C 0 1 Y N N N N N 98.622 6.377 -4.094 -10.896 -0.035 0.005 C2 I12 3
I12 C3 C3 C 0 1 Y N N N N N 99.438 6.141 -5.165 -11.560 0.445 -1.072 C3 I12 4
I12 C4 C4 C 0 1 N N N N N N 99.049 5.466 -6.442 -13.049 0.645 -1.196 C4 I12 5
I12 O1 O1 O 0 1 Y N N N N N 100.686 6.609 -4.915 -10.636 0.709 -2.006 O1 I12 6
I12 C5 C5 C 0 1 N N N N N N 98.889 7.485 -1.790 -8.360 -0.446 0.404 C5 I12 7
I12 O2 O2 O 0 1 N N N N N N 97.721 7.363 -1.459 -8.518 -0.864 1.535 O2 I12 8
I12 N2 N2 N 0 1 N N N N N N 99.732 8.017 -0.955 -7.121 -0.372 -0.120 N2 I12 9
I12 C6 C6 C 0 1 N N S N N N 99.608 8.504 0.445 -5.963 -0.794 0.673 C6 I12 10
I12 C7 C7 C 0 1 N N N N N N 98.608 9.652 0.555 -4.730 -0.084 0.178 C7 I12 11
I12 O3 O3 O 0 1 N N N N N N 98.591 10.554 -0.289 -4.810 0.698 -0.746 O3 I12 12
I12 C8 C8 C 0 1 N N N N N N 100.968 8.966 0.983 -5.773 -2.305 0.533 C8 I12 13
I12 N3 N3 N 0 1 N N N N N N 97.784 9.614 1.603 -3.538 -0.317 0.762 N3 I12 14
I12 C9 C9 C 0 1 N N S N N N 96.814 10.663 1.876 -2.339 0.373 0.280 C9 I12 15
I12 C10 C10 C 0 1 N N N N N N 95.385 10.169 1.653 -2.234 1.743 0.953 C10 I12 16
I12 C11 C11 C 0 1 N N N N N N 94.409 11.186 2.183 -2.094 1.560 2.465 C11 I12 17
I12 C12 C12 C 0 1 N N N N N N 95.138 9.933 0.163 -1.010 2.485 0.413 C12 I12 18
I12 C13 C13 C 0 1 N N N N N N 96.950 11.071 3.340 -1.119 -0.446 0.617 C13 I12 19
I12 O4 O4 O 0 1 N N N N N N 96.844 10.229 4.230 -1.160 -1.251 1.523 O4 I12 20
I12 N4 N4 N 0 1 N N N N N N 97.187 12.352 3.594 0.018 -0.283 -0.089 N4 I12 21
I12 C14 C14 C 0 1 N N S N N N 97.305 12.815 4.966 1.225 -1.023 0.286 C14 I12 22
I12 C15 C15 C 0 1 N N N N N N 97.880 14.233 4.996 1.228 -2.383 -0.414 C15 I12 23
I12 C16 C16 C 0 1 N N N N N N 99.259 14.383 4.352 2.424 -3.204 0.071 C16 I12 24
I12 C17 C17 C 0 1 N N N N N N 100.239 13.458 5.060 2.239 -3.551 1.550 C17 I12 25
I12 C18 C18 C 0 1 N N N N N N 99.728 15.830 4.441 2.523 -4.493 -0.747 C18 I12 26
I12 C19 C19 C 0 1 N N N N N N 95.907 12.790 5.585 2.444 -0.241 -0.132 C19 I12 27
I12 O5 O5 O 0 1 N N N N N N 94.936 13.084 4.857 2.377 0.534 -1.063 O5 I12 28
I12 N5 N5 N 0 1 N N N N N N 95.742 12.332 6.635 3.607 -0.402 0.529 N5 I12 29
I12 C20 C20 C 0 1 N N S N N N 94.458 12.005 7.332 4.766 0.425 0.184 C20 I12 30
I12 C21 C21 C 0 1 N N N N N N 94.344 13.022 8.496 6.033 -0.322 0.514 C21 I12 31
I12 C22 C22 C 0 1 N N N N N N 94.169 14.473 7.994 6.912 -0.600 -0.446 C22 I12 32
I12 C23 C23 C 0 1 N N N N N N 93.165 15.291 8.796 8.146 -1.329 -0.124 C23 I12 33
I12 O6 O6 O 0 1 N N N N N N 92.536 14.876 9.742 8.365 -1.678 1.020 O6 I12 34
I12 O7 O7 O 0 1 N N N N N N 93.028 16.535 8.264 9.036 -1.610 -1.096 O7 I12 35
I12 C24 C24 C 0 1 N N N N N N 92.026 17.361 8.829 10.257 -2.330 -0.777 C24 I12 36
I12 C25 C25 C 0 1 N N N N N N 91.879 18.610 7.966 11.085 -2.517 -2.050 C25 I12 37
I12 C26 C26 C 0 1 N N N N N N 93.984 10.581 7.707 4.720 1.728 0.984 C26 I12 38
I12 C27 C27 C 0 1 N N S N N N 93.427 9.815 6.537 5.859 2.644 0.533 C27 I12 39
I12 C28 C28 C 0 1 N N N N N N 92.010 10.156 6.169 5.914 3.914 1.414 C28 I12 40
I12 C29 C29 C 0 1 N N N N N N 91.629 8.888 5.406 6.315 4.994 0.385 C29 I12 41
I12 N6 N6 N 0 1 N N N N N N 92.175 7.907 6.334 5.854 4.489 -0.914 N6 I12 42
I12 C30 C30 C 0 1 N N N N N N 93.214 8.400 7.020 5.597 3.168 -0.862 C30 I12 43
I12 O8 O8 O 0 1 N N N N N N 93.840 7.783 7.847 5.211 2.498 -1.797 O8 I12 44
I12 H2 H2 H 0 1 N N N N N N 97.558 6.091 -4.039 -11.307 -0.356 0.951 H2 I12 45
I12 H41 1H4 H 0 1 N N N N N N 99.714 5.273 -7.315 -13.310 1.649 -0.860 H41 I12 46
I12 H42 2H4 H 0 1 N N N N N N 98.615 4.479 -6.155 -13.346 0.522 -2.237 H42 I12 47
I12 H43 3H4 H 0 1 N N N N N N 98.168 6.025 -6.836 -13.567 -0.090 -0.580 H43 I12 48
I12 HN2 HN2 H 0 1 N N N N N N 100.612 8.058 -1.469 -6.995 -0.039 -1.022 HN2 I12 49
I12 H6 H6 H 0 1 N N N N N N 99.236 7.648 1.056 -6.130 -0.544 1.721 H6 I12 50
I12 H81 1H8 H 0 1 N N N N N N 100.875 9.331 2.032 -6.665 -2.819 0.891 H81 I12 51
I12 H82 2H8 H 0 1 N N N N N N 101.741 8.167 0.890 -5.606 -2.555 -0.515 H82 I12 52
I12 H83 3H8 H 0 1 N N N N N N 101.435 9.730 0.320 -4.912 -2.619 1.122 H83 I12 53
I12 HN3 HN3 H 0 1 N N N N N N 97.894 8.788 2.191 -3.474 -0.942 1.501 HN3 I12 54
I12 H9 H9 H 0 1 N N N N N N 97.010 11.517 1.187 -2.403 0.502 -0.800 H9 I12 55
I12 H10 H10 H 0 1 N N N N N N 95.242 9.206 2.196 -3.133 2.322 0.739 H10 I12 56
I12 H111 1H11 H 0 0 N N N N N N 93.366 10.825 2.020 -1.195 0.981 2.679 H111 I12 57
I12 H112 2H11 H 0 0 N N N N N N 94.604 11.438 3.251 -2.020 2.537 2.944 H112 I12 58
I12 H113 3H11 H 0 0 N N N N N N 94.577 12.197 1.745 -2.967 1.032 2.850 H113 I12 59
I12 H121 1H12 H 0 0 N N N N N N 94.095 9.572 0.000 -1.069 2.540 -0.674 H121 I12 60
I12 H122 2H12 H 0 0 N N N N N N 95.366 10.838 -0.446 -0.983 3.492 0.827 H122 I12 61
I12 H123 3H12 H 0 0 N N N N N N 95.892 9.242 -0.280 -0.105 1.949 0.700 H123 I12 62
I12 HN4 HN4 H 0 1 N N N N N N 97.274 12.952 2.773 0.036 0.325 -0.845 HN4 I12 63
I12 H14 H14 H 0 1 N N N N N N 97.994 12.156 5.544 1.241 -1.170 1.366 H14 I12 64
I12 H151 1H15 H 0 0 N N N N N N 97.160 14.950 4.537 0.304 -2.913 -0.181 H151 I12 65
I12 H152 2H15 H 0 0 N N N N N N 97.899 14.619 6.041 1.300 -2.237 -1.492 H152 I12 66
I12 H16 H16 H 0 1 N N N N N N 99.202 14.104 3.273 3.338 -2.623 -0.054 H16 I12 67
I12 H171 1H17 H 0 0 N N N N N N 101.244 13.567 4.590 1.358 -4.183 1.667 H171 I12 68
I12 H172 2H17 H 0 0 N N N N N N 100.263 13.628 6.161 3.118 -4.084 1.911 H172 I12 69
I12 H173 3H17 H 0 0 N N N N N N 99.889 12.399 5.073 2.108 -2.635 2.124 H173 I12 70
I12 H181 1H18 H 0 0 N N N N N N 100.733 15.939 3.971 2.655 -4.246 -1.800 H181 I12 71
I12 H182 2H18 H 0 0 N N N N N N 98.984 16.536 4.002 3.376 -5.078 -0.401 H182 I12 72
I12 H183 3H18 H 0 0 N N N N N N 99.715 16.208 5.489 1.609 -5.074 -0.622 H183 I12 73
I12 HN5 HN5 H 0 1 N N N N N N 96.708 12.218 6.940 3.677 -1.065 1.233 HN5 I12 74
I12 H20 H20 H 0 1 N N N N N N 93.711 12.076 6.507 4.746 0.652 -0.882 H20 I12 75
I12 H21 H21 H 0 1 N N N N N N 94.383 12.744 9.562 6.227 -0.633 1.530 H21 I12 76
I12 H22 H22 H 0 1 N N N N N N 94.716 14.891 7.132 6.717 -0.290 -1.462 H22 I12 77
I12 H241 1H24 H 0 0 N N N N N N 91.059 16.823 8.970 10.005 -3.305 -0.361 H241 I12 78
I12 H242 2H24 H 0 0 N N N N N N 92.225 17.602 9.899 10.834 -1.761 -0.048 H242 I12 79
I12 H251 1H25 H 0 0 N N N N N N 91.090 19.260 8.410 12.001 -3.057 -1.811 H251 I12 80
I12 H252 2H25 H 0 0 N N N N N N 92.845 19.147 7.824 10.508 -3.085 -2.779 H252 I12 81
I12 H253 3H25 H 0 0 N N N N N N 91.679 18.368 6.895 11.337 -1.541 -2.466 H253 I12 82
I12 H261 1H26 H 0 0 N N N N N N 94.801 10.008 8.203 3.765 2.225 0.813 H261 I12 83
I12 H262 2H26 H 0 0 N N N N N N 93.249 10.615 8.545 4.830 1.507 2.045 H262 I12 84
I12 H27 H27 H 0 1 N N N N N N 94.131 10.013 5.695 6.811 2.114 0.569 H27 I12 85
I12 H281 1H28 H 0 0 N N N N N N 91.340 10.436 7.015 4.937 4.131 1.846 H281 I12 86
I12 H282 2H28 H 0 0 N N N N N N 91.865 11.116 5.621 6.670 3.816 2.192 H282 I12 87
I12 H291 1H29 H 0 0 N N N N N N 90.552 8.773 5.138 5.823 5.939 0.618 H291 I12 88
I12 H292 2H29 H 0 0 N N N N N N 91.978 8.820 4.349 7.397 5.124 0.376 H292 I12 89
I12 HN6 HN6 H 0 1 N N N N N N 91.855 6.951 6.490 5.748 5.036 -1.708 HN6 I12 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I12 N1 C1 DOUB Y N 1
I12 N1 O1 SING Y N 2
I12 C1 C2 SING Y N 3
I12 C1 C5 SING N N 4
I12 C2 C3 DOUB Y N 5
I12 C2 H2 SING N N 6
I12 C3 C4 SING N N 7
I12 C3 O1 SING Y N 8
I12 C4 H41 SING N N 9
I12 C4 H42 SING N N 10
I12 C4 H43 SING N N 11
I12 C5 O2 DOUB N N 12
I12 C5 N2 SING N N 13
I12 N2 C6 SING N N 14
I12 N2 HN2 SING N N 15
I12 C6 C7 SING N N 16
I12 C6 C8 SING N N 17
I12 C6 H6 SING N N 18
I12 C7 O3 DOUB N N 19
I12 C7 N3 SING N N 20
I12 C8 H81 SING N N 21
I12 C8 H82 SING N N 22
I12 C8 H83 SING N N 23
I12 N3 C9 SING N N 24
I12 N3 HN3 SING N N 25
I12 C9 C10 SING N N 26
I12 C9 C13 SING N N 27
I12 C9 H9 SING N N 28
I12 C10 C11 SING N N 29
I12 C10 C12 SING N N 30
I12 C10 H10 SING N N 31
I12 C11 H111 SING N N 32
I12 C11 H112 SING N N 33
I12 C11 H113 SING N N 34
I12 C12 H121 SING N N 35
I12 C12 H122 SING N N 36
I12 C12 H123 SING N N 37
I12 C13 O4 DOUB N N 38
I12 C13 N4 SING N N 39
I12 N4 C14 SING N N 40
I12 N4 HN4 SING N N 41
I12 C14 C15 SING N N 42
I12 C14 C19 SING N N 43
I12 C14 H14 SING N N 44
I12 C15 C16 SING N N 45
I12 C15 H151 SING N N 46
I12 C15 H152 SING N N 47
I12 C16 C17 SING N N 48
I12 C16 C18 SING N N 49
I12 C16 H16 SING N N 50
I12 C17 H171 SING N N 51
I12 C17 H172 SING N N 52
I12 C17 H173 SING N N 53
I12 C18 H181 SING N N 54
I12 C18 H182 SING N N 55
I12 C18 H183 SING N N 56
I12 C19 O5 DOUB N N 57
I12 C19 N5 SING N N 58
I12 N5 C20 SING N N 59
I12 N5 HN5 SING N N 60
I12 C20 C21 SING N N 61
I12 C20 C26 SING N N 62
I12 C20 H20 SING N N 63
I12 C21 C22 DOUB N E 64
I12 C21 H21 SING N N 65
I12 C22 C23 SING N N 66
I12 C22 H22 SING N N 67
I12 C23 O6 DOUB N N 68
I12 C23 O7 SING N N 69
I12 O7 C24 SING N N 70
I12 C24 C25 SING N N 71
I12 C24 H241 SING N N 72
I12 C24 H242 SING N N 73
I12 C25 H251 SING N N 74
I12 C25 H252 SING N N 75
I12 C25 H253 SING N N 76
I12 C26 C27 SING N N 77
I12 C26 H261 SING N N 78
I12 C26 H262 SING N N 79
I12 C27 C28 SING N N 80
I12 C27 C30 SING N N 81
I12 C27 H27 SING N N 82
I12 C28 C29 SING N N 83
I12 C28 H281 SING N N 84
I12 C28 H282 SING N N 85
I12 C29 N6 SING N N 86
I12 C29 H291 SING N N 87
I12 C29 H292 SING N N 88
I12 N6 C30 SING N N 89
I12 N6 HN6 SING N N 90
I12 C30 O8 DOUB N N 91
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I12 SMILES ACDLabs 10.04 "O=C(NC(C(=O)NC(C(=O)NC(C(=O)NC(\C=C\C(=O)OCC)CC1C(=O)NCC1)CC(C)C)C(C)C)C)c2noc(c2)C"
I12 SMILES_CANONICAL CACTVS 3.341 "CCOC(=O)/C=C/[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@@H](NC(=O)[C@H](C)NC(=O)c2cc(C)on2)C(C)C"
I12 SMILES CACTVS 3.341 "CCOC(=O)C=C[CH](C[CH]1CCNC1=O)NC(=O)[CH](CC(C)C)NC(=O)[CH](NC(=O)[CH](C)NC(=O)c2cc(C)on2)C(C)C"
I12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCOC(=O)C=C[C@H](C[C@@H]1CCNC1=O)NC(=O)[C@H](CC(C)C)NC(=O)[C@H](C(C)C)NC(=O)[C@H](C)NC(=O)c2cc(on2)C"
I12 SMILES "OpenEye OEToolkits" 1.5.0 "CCOC(=O)C=CC(CC1CCNC1=O)NC(=O)C(CC(C)C)NC(=O)C(C(C)C)NC(=O)C(C)NC(=O)c2cc(on2)C"
I12 InChI InChI 1.03 "InChI=1S/C30H46N6O8/c1-8-43-24(37)10-9-21(15-20-11-12-31-27(20)39)33-28(40)22(13-16(2)3)34-30(42)25(17(4)5)35-26(38)19(7)32-29(41)23-14-18(6)44-36-23/h9-10,14,16-17,19-22,25H,8,11-13,15H2,1-7H3,(H,31,39)(H,32,41)(H,33,40)(H,34,42)(H,35,38)/b10-9+/t19-,20-,21+,22-,25-/m0/s1"
I12 InChIKey InChI 1.03 LIVSSCDUYUOZEL-GLXPMXKMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
I12 "SYSTEMATIC NAME" ACDLabs 10.04 "N-[(5-methylisoxazol-3-yl)carbonyl]-L-alanyl-L-valyl-N-[(1S,2E)-4-ethoxy-4-oxo-1-{[(3S)-2-oxopyrrolidin-3-yl]methyl}but-2-en-1-yl]-L-leucinamide"
I12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "ethyl (4S)-4-[[(2S)-4-methyl-2-[[(2S)-3-methyl-2-[[(2S)-2-[(5-methyl-1,2-oxazol-3-yl)carbonylamino]propanoyl]amino]butanoyl]amino]pentanoyl]amino]-5-[(3S)-2-oxopyrrolidin-3-yl]pent-2-enoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I12 "Create component" 2004-08-30 RCSB
I12 "Modify descriptor" 2011-06-04 RCSB
I12 "Modify synonyms" 2021-03-01 PDBE
I12 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id I12
_pdbx_chem_comp_synonyms.name "(E)-(S)-4-[(S)-4-METHYL-2-((S)-3-METHYL-2{(S)-2-[(5-METHYL-ISOXAZOLE-3- CARBONYL)-AMINO]-PROPIONYLAMINO}-BUTYRYLAMINO)-PENTANOYLAMINO]-5-((S)-2- OXO-PYRROLIDIN-3-YL)-PENT-2-ENOIC ACID ETHYL ESTER"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id I12
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C21
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#