data_I1V # _chem_comp.id I1V _chem_comp.name "(2~{R})-2-azanyl-~{N}'-[(2~{S},6~{R})-6,7-bis(azanyl)-1-oxidanyl-7-oxidanylidene-heptan-2-yl]pentanediamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H25 N5 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-07-25 _chem_comp.pdbx_modified_date 2024-08-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 303.358 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I1V _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8PXZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I1V C10 C1 C 0 1 N N S N N N 36.195 32.159 8.027 -0.689 -2.104 0.451 C10 I1V 1 I1V C13 C2 C 0 1 N N N N N N 39.604 32.468 7.009 -3.962 -0.127 -0.007 C13 I1V 2 I1V C02 C3 C 0 1 N N R N N N 33.884 35.817 10.783 4.590 1.080 -0.613 C02 I1V 3 I1V C03 C4 C 0 1 N N N N N N 33.401 35.860 12.242 5.911 1.187 0.105 C03 I1V 4 I1V C06 C5 C 0 1 N N N N N N 32.878 35.030 9.935 3.647 0.179 0.187 C06 I1V 5 I1V C07 C6 C 0 1 N N N N N N 33.512 33.958 9.020 2.352 -0.031 -0.601 C07 I1V 6 I1V C08 C7 C 0 1 N N N N N N 34.523 33.149 9.825 1.423 -0.918 0.186 C08 I1V 7 I1V C11 C8 C 0 1 N N N N N N 37.109 32.959 7.178 -2.134 -1.831 0.029 C11 I1V 8 I1V C12 C9 C 0 1 N N N N N N 38.221 32.190 6.381 -2.517 -0.400 0.415 C12 I1V 9 I1V C14 C10 C 0 1 N N R N N N 40.883 31.859 6.392 -4.344 1.303 0.379 C14 I1V 10 I1V C16 C11 C 0 1 N N N N N N 40.975 32.047 4.881 -5.802 1.533 0.076 C16 I1V 11 I1V C19 C12 C 0 1 N N N N N N 37.275 31.319 8.787 -0.347 -3.570 0.179 C19 I1V 12 I1V N01 N1 N 0 1 N N N N N N 34.034 37.170 10.253 3.996 2.416 -0.746 N01 I1V 13 I1V N04 N2 N 0 1 N N N N N N 34.120 35.112 13.262 6.819 0.197 -0.003 N04 I1V 14 I1V N09 N3 N 0 1 N N N N N N 35.675 32.404 9.360 0.214 -1.241 -0.315 N09 I1V 15 I1V N15 N4 N 0 1 N N N N N N 40.925 30.444 6.772 -3.529 2.252 -0.391 N15 I1V 16 I1V N17 N5 N 0 1 N N N N N N 42.234 32.515 4.319 -6.746 1.086 0.928 N17 I1V 17 I1V O05 O1 O 0 1 N N N N N N 32.453 36.507 12.554 6.157 2.164 0.780 O05 I1V 18 I1V O18 O2 O 0 1 N N N N N N 40.059 31.831 4.195 -6.127 2.118 -0.936 O18 I1V 19 I1V O26 O3 O 0 1 N N N N N N 38.146 32.052 9.230 -0.607 -3.874 -1.193 O26 I1V 20 I1V O27 O4 O 0 1 N N N N N N 34.399 33.163 10.983 1.763 -1.341 1.271 O27 I1V 21 I1V H1 H1 H 0 1 N N N N N N 35.540 31.507 7.430 -0.576 -1.895 1.515 H1 I1V 22 I1V H2 H2 H 0 1 N N N N N N 39.740 33.560 7.002 -4.055 -0.250 -1.086 H2 I1V 23 I1V H3 H3 H 0 1 N N N N N N 39.555 32.112 8.049 -4.626 -0.829 0.497 H3 I1V 24 I1V H4 H4 H 0 1 N N N N N N 34.853 35.298 10.750 4.748 0.652 -1.603 H4 I1V 25 I1V H5 H5 H 0 1 N N N N N N 32.331 35.743 9.301 4.126 -0.784 0.362 H5 I1V 26 I1V H6 H6 H 0 1 N N N N N N 32.174 34.528 10.615 3.418 0.650 1.143 H6 I1V 27 I1V H7 H7 H 0 1 N N N N N N 34.020 34.448 8.176 1.873 0.933 -0.776 H7 I1V 28 I1V H8 H8 H 0 1 N N N N N N 32.727 33.290 8.637 2.581 -0.502 -1.557 H8 I1V 29 I1V H9 H9 H 0 1 N N N N N N 37.615 33.684 7.832 -2.227 -1.953 -1.050 H9 I1V 30 I1V H10 H10 H 0 1 N N N N N N 36.490 33.496 6.444 -2.799 -2.533 0.533 H10 I1V 31 I1V H11 H11 H 0 1 N N N N N N 38.221 32.529 5.335 -1.852 0.302 -0.089 H11 I1V 32 I1V H12 H12 H 0 1 N N N N N N 38.015 31.110 6.416 -2.424 -0.278 1.494 H12 I1V 33 I1V H13 H13 H 0 1 N N N N N N 41.745 32.369 6.847 -4.167 1.452 1.444 H13 I1V 34 I1V H14 H14 H 0 1 N N N N N N 36.797 30.780 9.618 0.707 -3.743 0.396 H14 I1V 35 I1V H15 H15 H 0 1 N N N N N N 37.728 30.596 8.093 -0.959 -4.210 0.815 H15 I1V 36 I1V H16 H16 H 0 1 N N N N N N 34.691 37.676 10.811 3.140 2.380 -1.281 H16 I1V 37 I1V H17 H17 H 0 1 N N N N N N 34.364 37.124 9.310 3.839 2.834 0.159 H17 I1V 38 I1V H19 H19 H 0 1 N N N N N N 33.816 35.145 14.214 6.622 -0.585 -0.543 H19 I1V 39 I1V H20 H20 H 0 1 N N N N N N 34.918 34.565 13.011 7.669 0.266 0.459 H20 I1V 40 I1V H21 H21 H 0 1 N N N N N N 36.210 31.981 10.091 -0.058 -0.903 -1.182 H21 I1V 41 I1V H22 H22 H 0 1 N N N N N N 40.862 30.364 7.767 -3.675 2.134 -1.382 H22 I1V 42 I1V H23 H23 H 0 1 N N N N N N 40.157 29.963 6.350 -3.716 3.202 -0.108 H23 I1V 43 I1V H25 H25 H 0 1 N N N N N N 42.320 32.655 3.333 -6.487 0.618 1.737 H25 I1V 44 I1V H26 H26 H 0 1 N N N N N N 43.013 32.697 4.919 -7.685 1.234 0.733 H26 I1V 45 I1V H27 H27 H 0 1 N N N N N N 38.795 31.532 9.689 -0.412 -4.789 -1.437 H27 I1V 46 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I1V O18 C16 DOUB N N 1 I1V N17 C16 SING N N 2 I1V C16 C14 SING N N 3 I1V C12 C13 SING N N 4 I1V C12 C11 SING N N 5 I1V C14 N15 SING N N 6 I1V C14 C13 SING N N 7 I1V C11 C10 SING N N 8 I1V C10 C19 SING N N 9 I1V C10 N09 SING N N 10 I1V C19 O26 SING N N 11 I1V C07 C08 SING N N 12 I1V C07 C06 SING N N 13 I1V N09 C08 SING N N 14 I1V C08 O27 DOUB N N 15 I1V C06 C02 SING N N 16 I1V N01 C02 SING N N 17 I1V C02 C03 SING N N 18 I1V C03 O05 DOUB N N 19 I1V C03 N04 SING N N 20 I1V C10 H1 SING N N 21 I1V C13 H2 SING N N 22 I1V C13 H3 SING N N 23 I1V C02 H4 SING N N 24 I1V C06 H5 SING N N 25 I1V C06 H6 SING N N 26 I1V C07 H7 SING N N 27 I1V C07 H8 SING N N 28 I1V C11 H9 SING N N 29 I1V C11 H10 SING N N 30 I1V C12 H11 SING N N 31 I1V C12 H12 SING N N 32 I1V C14 H13 SING N N 33 I1V C19 H14 SING N N 34 I1V C19 H15 SING N N 35 I1V N01 H16 SING N N 36 I1V N01 H17 SING N N 37 I1V N04 H19 SING N N 38 I1V N04 H20 SING N N 39 I1V N09 H21 SING N N 40 I1V N15 H22 SING N N 41 I1V N15 H23 SING N N 42 I1V N17 H25 SING N N 43 I1V N17 H26 SING N N 44 I1V O26 H27 SING N N 45 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I1V InChI InChI 1.06 "InChI=1S/C12H25N5O4/c13-8(11(15)20)3-1-2-7(6-18)17-10(19)5-4-9(14)12(16)21/h7-9,18H,1-6,13-14H2,(H2,15,20)(H2,16,21)(H,17,19)/t7-,8+,9+/m0/s1" I1V InChIKey InChI 1.06 JJMJHAUQDTZOGG-DJLDLDEBSA-N I1V SMILES_CANONICAL CACTVS 3.385 "N[C@H](CCC[C@@H](CO)NC(=O)CC[C@@H](N)C(N)=O)C(N)=O" I1V SMILES CACTVS 3.385 "N[CH](CCC[CH](CO)NC(=O)CC[CH](N)C(N)=O)C(N)=O" I1V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C(C[C@@H](CO)NC(=O)CC[C@H](C(=O)N)N)C[C@H](C(=O)N)N" I1V SMILES "OpenEye OEToolkits" 2.0.7 "C(CC(CO)NC(=O)CCC(C(=O)N)N)CC(C(=O)N)N" # _pdbx_chem_comp_identifier.comp_id I1V _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R})-2-azanyl-~{N}'-[(2~{S},6~{R})-6,7-bis(azanyl)-1-oxidanyl-7-oxidanylidene-heptan-2-yl]pentanediamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I1V "Create component" 2023-07-25 PDBE I1V "Initial release" 2024-08-07 RCSB #