data_I2C
#
_chem_comp.id I2C
_chem_comp.name "5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H23 N6 O10 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-11-21
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 526.394
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I2C
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3F46
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I2C O8 O8 O 0 1 N N N 21.765 6.663 23.503 8.728 -0.838 2.619 O8 I2C 1
I2C C8 C8 C 0 1 N N N 21.078 7.032 24.482 8.510 0.014 1.792 C8 I2C 2
I2C N1 N1 N 0 1 Y N N 19.510 7.561 26.505 6.771 1.567 -0.441 N1 I2C 3
I2C C2 C2 C 0 1 Y N N 18.573 7.677 27.469 5.684 2.273 -0.706 C2 I2C 4
I2C O2 O2 O 0 1 N N N 17.290 7.302 27.269 5.798 3.476 -1.322 O2 I2C 5
I2C C3 C3 C 0 1 Y N N 18.875 8.246 28.723 4.428 1.795 -0.359 C3 I2C 6
I2C C3M C3M C 0 1 N N N 17.802 8.426 29.765 3.193 2.603 -0.664 C3M I2C 7
I2C C7 C7 C 0 1 N N N 21.825 7.666 25.663 7.980 -0.370 0.435 C7 I2C 8
I2C C6 C6 C 0 1 Y N N 20.791 7.893 26.771 6.709 0.391 0.157 C6 I2C 9
I2C C5 C5 C 0 1 Y N N 21.165 8.407 28.039 5.498 -0.149 0.532 C5 I2C 10
I2C C5M C5M C 0 1 N N N 22.608 8.783 28.321 5.440 -1.491 1.215 C5M I2C 11
I2C C4 C4 C 0 1 Y N N 20.193 8.579 29.020 4.326 0.562 0.272 C4 I2C 12
I2C O3P O3P O 0 1 N N N 20.470 9.178 30.237 3.116 0.060 0.628 O3P I2C 13
I2C P1 P1 P 0 1 N N S 20.494 8.534 31.666 2.362 -0.730 -0.554 P1 I2C 14
I2C O2P O2P O 0 1 N N N 19.751 7.220 31.574 3.197 -2.053 -0.934 O2P I2C 15
I2C O1P O1P O 0 1 N N N 20.109 9.581 32.672 2.256 0.144 -1.744 O1P I2C 16
I2C "O5'" O5* O 0 1 N N N 22.036 8.197 31.781 0.887 -1.150 -0.064 O5* I2C 17
I2C "C5'" C5* C 0 1 N N N 22.962 9.206 32.249 -0.071 -1.774 -0.922 C5* I2C 18
I2C "C4'" C4* C 0 1 N N R 23.837 8.628 33.356 -1.361 -2.036 -0.141 C4* I2C 19
I2C "O4'" O4* O 0 1 N N N 25.018 9.435 33.558 -1.978 -0.787 0.215 O4* I2C 20
I2C "C3'" C3* C 0 1 N N S 23.121 8.526 34.697 -2.361 -2.805 -1.025 C3* I2C 21
I2C "O3'" O3* O 0 1 N N N 23.132 7.146 35.178 -2.692 -4.061 -0.430 O3* I2C 22
I2C "C2'" C2* C 0 1 N N R 23.899 9.488 35.593 -3.606 -1.886 -1.078 C2* I2C 23
I2C "O2'" O2* O 0 1 N N N 23.841 9.097 36.960 -4.809 -2.651 -0.974 O2* I2C 24
I2C "C1'" C1* C 0 1 N N R 25.279 9.408 34.950 -3.406 -0.996 0.175 C1* I2C 25
I2C N9A N9A N 0 1 Y N N 26.237 10.479 35.347 -4.110 0.279 0.020 N9A I2C 26
I2C C4A C4A C 0 1 Y N N 27.537 10.205 35.387 -5.403 0.539 0.383 C4A I2C 27
I2C N3A N3A N 0 1 N N N 28.237 9.058 35.103 -6.379 -0.186 0.943 N3A I2C 28
I2C C2A C2A C 0 1 N N N 29.598 9.075 35.241 -7.560 0.337 1.186 C2A I2C 29
I2C N2A N2A N 0 1 N N N 30.337 7.988 34.954 -8.529 -0.445 1.762 N2A I2C 30
I2C N1A N1A N 0 1 N N N 30.227 10.203 35.673 -7.850 1.634 0.883 N1A I2C 31
I2C C8A C8A C 0 1 Y N N 26.007 11.764 35.768 -3.593 1.427 -0.507 C8A I2C 32
I2C N7A N7A N 0 1 Y N N 27.216 12.316 36.046 -4.495 2.364 -0.491 N7A I2C 33
I2C C5A C5A C 0 1 Y N N 28.175 11.364 35.832 -5.639 1.877 0.049 C5A I2C 34
I2C C6A C6A C 0 1 N N N 29.552 11.328 35.975 -6.915 2.427 0.315 C6A I2C 35
I2C O6A O6A O 0 1 N N N 30.179 12.349 36.385 -7.164 3.589 0.041 O6A I2C 36
I2C H8 H8 H 0 1 N N N 20.005 6.909 24.495 8.690 1.053 2.027 H8 I2C 37
I2C HO2 HO2 H 0 1 N N N 16.851 7.214 28.107 5.765 3.428 -2.288 HO2 I2C 38
I2C H3M H3M H 0 1 N N N 18.263 8.470 30.763 2.819 2.335 -1.652 H3M I2C 39
I2C H3MA H3MA H 0 0 N N N 17.257 9.362 29.572 2.428 2.393 0.083 H3MA I2C 40
I2C H3MB H3MB H 0 0 N N N 17.103 7.578 29.721 3.439 3.664 -0.644 H3MB I2C 41
I2C H7 H7 H 0 1 N N N 22.623 6.996 26.015 8.722 -0.129 -0.327 H7 I2C 42
I2C H7A H7A H 0 1 N N N 22.298 8.614 25.366 7.774 -1.440 0.415 H7A I2C 43
I2C H5M H5M H 0 1 N N N 23.156 8.874 27.372 5.617 -1.363 2.283 H5M I2C 44
I2C H5MA H5MA H 0 0 N N N 22.639 9.744 28.855 4.456 -1.935 1.061 H5MA I2C 45
I2C H5MB H5MB H 0 0 N N N 23.075 8.003 28.941 6.204 -2.145 0.796 H5MB I2C 46
I2C HO2P HO2P H 0 0 N N N 19.595 7.007 30.661 3.313 -2.670 -0.198 HO2P I2C 47
I2C "H5'" H5* H 0 1 N N N 23.599 9.533 31.414 -0.284 -1.119 -1.766 H5* I2C 48
I2C "H5'A" H5*A H 0 0 N N N 22.397 10.064 32.642 0.331 -2.719 -1.287 H5*A I2C 49
I2C "H4'" H4* H 0 1 N N N 24.100 7.616 33.014 -1.140 -2.610 0.758 H4* I2C 50
I2C "H3'" H3* H 0 1 N N N 22.055 8.794 34.659 -1.952 -2.954 -2.025 H3* I2C 51
I2C "HO3'" HO3* H 0 0 N N N 23.134 6.552 34.437 -3.319 -4.588 -0.945 HO3* I2C 52
I2C "H2'" H2* H 0 1 N N N 23.517 10.518 35.644 -3.607 -1.284 -1.987 H2* I2C 53
I2C "HO2'" HO2* H 0 0 N N N 23.828 8.149 37.018 -4.933 -3.288 -1.691 HO2* I2C 54
I2C "H1'" H1* H 0 1 N N N 25.794 8.497 35.290 -3.743 -1.515 1.072 H1* I2C 55
I2C HN2A HN2A H 0 0 N N N 31.306 8.180 35.112 -8.338 -1.370 1.984 HN2A I2C 56
I2C HN2B HN2B H 0 0 N N N 29.971 7.116 34.630 -9.406 -0.074 1.948 HN2B I2C 57
I2C HN1A HN1A H 0 0 N N N 31.222 10.195 35.769 -8.732 1.989 1.075 HN1A I2C 58
I2C H8A H8A H 0 1 N N N 25.045 12.246 35.861 -2.587 1.540 -0.882 H8A I2C 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I2C O8 C8 DOUB N N 1
I2C C8 C7 SING N N 2
I2C N1 C2 DOUB Y N 3
I2C N1 C6 SING Y N 4
I2C C2 O2 SING N N 5
I2C C2 C3 SING Y N 6
I2C C3 C3M SING N N 7
I2C C3 C4 DOUB Y N 8
I2C C7 C6 SING N N 9
I2C C6 C5 DOUB Y N 10
I2C C5 C5M SING N N 11
I2C C5 C4 SING Y N 12
I2C C4 O3P SING N N 13
I2C O3P P1 SING N N 14
I2C P1 O2P SING N N 15
I2C P1 O1P DOUB N N 16
I2C P1 "O5'" SING N N 17
I2C "O5'" "C5'" SING N N 18
I2C "C5'" "C4'" SING N N 19
I2C "C4'" "O4'" SING N N 20
I2C "C4'" "C3'" SING N N 21
I2C "O4'" "C1'" SING N N 22
I2C "C3'" "O3'" SING N N 23
I2C "C3'" "C2'" SING N N 24
I2C "C2'" "O2'" SING N N 25
I2C "C2'" "C1'" SING N N 26
I2C "C1'" N9A SING N N 27
I2C N9A C4A SING Y N 28
I2C N9A C8A SING Y N 29
I2C C4A N3A SING N N 30
I2C C4A C5A DOUB Y N 31
I2C N3A C2A DOUB N N 32
I2C C2A N2A SING N N 33
I2C C2A N1A SING N N 34
I2C N1A C6A SING N N 35
I2C C8A N7A DOUB Y N 36
I2C N7A C5A SING Y N 37
I2C C5A C6A SING N N 38
I2C C6A O6A DOUB N N 39
I2C C8 H8 SING N N 40
I2C O2 HO2 SING N N 41
I2C C3M H3M SING N N 42
I2C C3M H3MA SING N N 43
I2C C3M H3MB SING N N 44
I2C C7 H7 SING N N 45
I2C C7 H7A SING N N 46
I2C C5M H5M SING N N 47
I2C C5M H5MA SING N N 48
I2C C5M H5MB SING N N 49
I2C O2P HO2P SING N N 50
I2C "C5'" "H5'" SING N N 51
I2C "C5'" "H5'A" SING N N 52
I2C "C4'" "H4'" SING N N 53
I2C "C3'" "H3'" SING N N 54
I2C "O3'" "HO3'" SING N N 55
I2C "C2'" "H2'" SING N N 56
I2C "O2'" "HO2'" SING N N 57
I2C "C1'" "H1'" SING N N 58
I2C N2A HN2A SING N N 59
I2C N2A HN2B SING N N 60
I2C N1A HN1A SING N N 61
I2C C8A H8A SING N N 62
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I2C SMILES ACDLabs 10.04 "O=CCc4nc(O)c(c(OP(=O)(O)OCC3OC(n2cnc1c2N=C(N)NC1=O)C(O)C3O)c4C)C"
I2C SMILES_CANONICAL CACTVS 3.341 "Cc1c(O)nc(CC=O)c(C)c1O[P@](O)(=O)OC[C@H]2O[C@H]([C@H](O)[C@@H]2O)n3cnc4C(=O)NC(=Nc34)N"
I2C SMILES CACTVS 3.341 "Cc1c(O)nc(CC=O)c(C)c1O[P](O)(=O)OC[CH]2O[CH]([CH](O)[CH]2O)n3cnc4C(=O)NC(=Nc34)N"
I2C SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(nc(c(c1O[P@@](=O)(O)OC[C@@H]2[C@H]([C@H]([C@@H](O2)n3cnc4c3N=C(NC4=O)N)O)O)C)O)CC=O"
I2C SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(nc(c(c1OP(=O)(O)OCC2C(C(C(O2)n3cnc4c3N=C(NC4=O)N)O)O)C)O)CC=O"
I2C InChI InChI 1.03
"InChI=1S/C19H23N6O10P/c1-7-9(3-4-26)22-16(29)8(2)14(7)35-36(31,32)33-5-10-12(27)13(28)18(34-10)25-6-21-11-15(25)23-19(20)24-17(11)30/h4,6,10,12-13,18,27-28H,3,5H2,1-2H3,(H,22,29)(H,31,32)(H3,20,23,24,30)/t10-,12-,13-,18-/m1/s1"
I2C InChIKey InChI 1.03 FVDPDULUWMBTHF-IPKTUIKJSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
I2C "SYSTEMATIC NAME" ACDLabs 10.04 "5'-O-[(S)-hydroxy{[2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl]oxy}phosphoryl]guanosine"
I2C "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-5-(2-amino-6-oxo-1H-purin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methyl [2-hydroxy-3,5-dimethyl-6-(2-oxoethyl)pyridin-4-yl] hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I2C "Create component" 2008-11-21 PDBJ
I2C "Modify aromatic_flag" 2011-06-04 RCSB
I2C "Modify descriptor" 2011-06-04 RCSB
#