data_I2F # _chem_comp.id I2F _chem_comp.name "(2~{S},4~{R},5~{E})-5-[(5~{S})-5-azanyl-6-oxidanyl-hexyl]iminohexane-1,2,4-triol" _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H26 N2 O5" _chem_comp.mon_nstd_parent_comp_id LYS _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-02-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 278.345 _chem_comp.one_letter_code K _chem_comp.three_letter_code I2F _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7QXF _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I2F N N N 0 1 N N N Y Y N 31.900 26.664 -13.968 5.721 1.240 -0.618 N I2F 1 I2F CA CA C 0 1 N N S Y N N 32.476 26.713 -12.606 5.226 0.054 0.095 CA I2F 2 I2F CB CB C 0 1 N N N N N N 33.646 25.738 -12.469 3.822 -0.292 -0.405 CB I2F 3 I2F CG CG C 0 1 N N N N N N 33.506 24.350 -13.124 2.856 0.835 -0.036 CG I2F 4 I2F CD CD C 0 1 N N N N N N 34.798 23.513 -13.020 1.452 0.489 -0.536 CD I2F 5 I2F CE CE C 0 1 N N N N N N 35.160 23.259 -11.568 0.486 1.616 -0.166 CE I2F 6 I2F NZ NZ N 0 1 N N N N N N 36.379 22.488 -11.441 -0.858 1.284 -0.645 NZ I2F 7 I2F CH CH C 0 1 N N N N N N 36.548 21.495 -10.683 -1.804 1.082 0.192 CH I2F 8 I2F C1 C1 C 0 1 N N N N N N 35.417 20.950 -9.866 -1.507 1.043 1.669 C1 I2F 9 I2F C2 C2 C 0 1 N N R N N N 37.890 20.850 -10.666 -3.214 0.881 -0.298 C2 I2F 10 I2F O4 O4 O 0 1 N N N N N N 37.782 19.884 -11.700 -4.034 1.960 0.155 O4 I2F 11 I2F C C C 0 1 N N N Y N Y 32.937 28.134 -12.264 6.165 -1.126 -0.164 C I2F 12 I2F O O O 0 1 N N N Y N Y 33.763 28.648 -13.102 5.683 -2.279 0.530 O I2F 13 I2F C3 C3 C 0 1 N N N N N N 38.287 20.189 -9.337 -3.761 -0.439 0.249 C3 I2F 14 I2F C5 C5 C 0 1 N N S N N N 39.785 20.319 -9.027 -5.145 -0.704 -0.348 C5 I2F 15 I2F C6 C6 C 0 1 N N N N N N 40.092 19.778 -7.627 -5.639 -2.081 0.100 C6 I2F 16 I2F O6 O6 O 0 1 N N N N N N 40.578 19.599 -9.975 -6.058 0.299 0.103 O6 I2F 17 I2F O1 O1 O 0 1 N N N N N N 41.385 19.155 -7.524 -6.877 -2.378 -0.549 O1 I2F 18 I2F H H1 H 0 1 N N N Y Y N 31.138 27.309 -14.032 5.764 1.072 -1.612 H1 I2F 19 I2F H2 H2 H 0 1 N Y N Y Y N 32.602 26.911 -14.636 5.154 2.048 -0.412 H2 I2F 20 I2F HA H4 H 0 1 N N N Y N N 31.700 26.422 -11.883 5.189 0.262 1.164 H4 I2F 21 I2F H5 H5 H 0 1 N N N N N N 33.815 25.578 -11.394 3.841 -0.413 -1.488 H5 I2F 22 I2F H6 H6 H 0 1 N N N N N N 34.529 26.222 -12.911 3.490 -1.221 0.058 H6 I2F 23 I2F H7 H7 H 0 1 N N N N N N 33.258 24.485 -14.187 2.836 0.956 1.047 H7 I2F 24 I2F H8 H8 H 0 1 N N N N N N 32.692 23.805 -12.624 3.188 1.764 -0.499 H8 I2F 25 I2F H9 H9 H 0 1 N N N N N N 34.645 22.549 -13.528 1.472 0.368 -1.619 H9 I2F 26 I2F H10 H10 H 0 1 N N N N N N 35.621 24.057 -13.507 1.120 -0.440 -0.072 H10 I2F 27 I2F H11 H11 H 0 1 N N N N N N 35.297 24.226 -11.061 0.466 1.737 0.917 H11 I2F 28 I2F H12 H12 H 0 1 N N N N N N 34.339 22.707 -11.088 0.818 2.545 -0.630 H12 I2F 29 I2F H13 H13 H 0 1 N N N N N N 35.770 20.090 -9.278 -1.515 2.058 2.068 H13 I2F 30 I2F H14 H14 H 0 1 N N N N N N 35.046 21.731 -9.187 -2.265 0.447 2.177 H14 I2F 31 I2F H15 H15 H 0 1 N N N N N N 34.604 20.628 -10.534 -0.525 0.597 1.831 H15 I2F 32 I2F H16 H16 H 0 1 N N N N N N 38.653 21.598 -10.926 -3.220 0.853 -1.388 H16 I2F 33 I2F H17 H17 H 0 1 N N N N N N 38.600 19.407 -11.775 -4.076 2.045 1.117 H17 I2F 34 I2F H18 H18 H 0 1 N N N Y N Y 33.338 28.130 -11.240 6.201 -1.334 -1.233 H18 I2F 35 I2F H20 H20 H 0 1 N N N Y N Y 33.998 29.524 -12.819 5.624 -2.165 1.488 H20 I2F 36 I2F H21 H21 H 0 1 N N N N N N 37.718 20.665 -8.525 -3.087 -1.252 -0.022 H21 I2F 37 I2F H22 H22 H 0 1 N N N N N N 38.031 19.120 -9.386 -3.839 -0.379 1.334 H22 I2F 38 I2F H23 H23 H 0 1 N N N N N N 40.052 21.386 -9.053 -5.083 -0.677 -1.436 H23 I2F 39 I2F H24 H24 H 0 1 N N N N N N 40.050 20.614 -6.914 -4.899 -2.837 -0.166 H24 I2F 40 I2F H25 H25 H 0 1 N N N N N N 39.325 19.034 -7.365 -5.786 -2.081 1.180 H25 I2F 41 I2F H26 H26 H 0 1 N N N N N N 41.498 19.697 -9.759 -6.163 0.332 1.064 H26 I2F 42 I2F H27 H27 H 0 1 N N N N N N 41.516 18.841 -6.637 -7.249 -3.238 -0.311 H27 I2F 43 I2F OXT OXT O 0 1 N Y N Y N Y ? ? ? 7.476 -0.802 0.303 OXT I2F 44 I2F HXT H3 H 0 1 N Y N Y N Y ? ? ? 8.125 -1.506 0.172 H3 I2F 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I2F N CA SING N N 1 I2F CG CD SING N N 2 I2F CG CB SING N N 3 I2F O C SING N N 4 I2F CD CE SING N N 5 I2F CA CB SING N N 6 I2F CA C SING N N 7 I2F O4 C2 SING N N 8 I2F CE NZ SING N N 9 I2F NZ CH DOUB N N 10 I2F CH C2 SING N N 11 I2F CH C1 SING N N 12 I2F C2 C3 SING N N 13 I2F O6 C5 SING N N 14 I2F C3 C5 SING N N 15 I2F C5 C6 SING N N 16 I2F C6 O1 SING N N 17 I2F N H SING N N 18 I2F N H2 SING N N 19 I2F CA HA SING N N 20 I2F CB H5 SING N N 21 I2F CB H6 SING N N 22 I2F CG H7 SING N N 23 I2F CG H8 SING N N 24 I2F CD H9 SING N N 25 I2F CD H10 SING N N 26 I2F CE H11 SING N N 27 I2F CE H12 SING N N 28 I2F C1 H13 SING N N 29 I2F C1 H14 SING N N 30 I2F C1 H15 SING N N 31 I2F C2 H16 SING N N 32 I2F O4 H17 SING N N 33 I2F C H18 SING N N 34 I2F O H20 SING N N 35 I2F C3 H21 SING N N 36 I2F C3 H22 SING N N 37 I2F C5 H23 SING N N 38 I2F C6 H24 SING N N 39 I2F C6 H25 SING N N 40 I2F O6 H26 SING N N 41 I2F O1 H27 SING N N 42 I2F C OXT SING N N 43 I2F OXT HXT SING N N 44 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I2F InChI InChI 1.06 "InChI=1S/C12H26N2O5/c1-8(11(17)6-9(16)7-15)14-5-3-2-4-10(13)12(18)19/h9-12,15-19H,2-7,13H2,1H3/b14-8+/t9-,10-,11+/m0/s1" I2F InChIKey InChI 1.06 NOGRJEXZOQDSRE-WDLDIGNLSA-N I2F SMILES_CANONICAL CACTVS 3.385 "CC(=NCCCC[C@H](N)C(O)O)[C@H](O)C[C@H](O)CO" I2F SMILES CACTVS 3.385 "CC(=NCCCC[CH](N)C(O)O)[CH](O)C[CH](O)CO" I2F SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C/C(=N\CCCC[C@@H](C(O)O)N)/[C@@H](C[C@@H](CO)O)O" I2F SMILES "OpenEye OEToolkits" 2.0.7 "CC(=NCCCCC(C(O)O)N)C(CC(CO)O)O" # _pdbx_chem_comp_identifier.comp_id I2F _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S},4~{R},5~{E})-5-[(5~{S})-5-azanyl-6,6-bis(oxidanyl)hexyl]iminohexane-1,2,4-triol" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I2F "Create component" 2022-02-08 PDBE I2F "Modify linking type" 2022-06-15 PDBE I2F "Modify descriptor" 2022-08-22 RCSB I2F "Initial release" 2023-02-08 RCSB I2F "Modify backbone" 2023-11-03 PDBE I2F "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id I2F _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #