data_I2X
# 
_chem_comp.id                                    I2X 
_chem_comp.name                                  "6-(difluoromethyl)pyrimidin-4-ol" 
_chem_comp.type                                  non-polymer 
_chem_comp.pdbx_type                             HETAIN 
_chem_comp.formula                               "C5 H4 F2 N2 O" 
_chem_comp.mon_nstd_parent_comp_id               ? 
_chem_comp.pdbx_synonyms                         "ISOTHIAZOLIDANONE ANALOGUE" 
_chem_comp.pdbx_formal_charge                    0 
_chem_comp.pdbx_initial_date                     2023-07-25 
_chem_comp.pdbx_modified_date                    2024-08-09 
_chem_comp.pdbx_ambiguous_flag                   N 
_chem_comp.pdbx_release_status                   REL 
_chem_comp.pdbx_replaced_by                      ? 
_chem_comp.pdbx_replaces                         ? 
_chem_comp.formula_weight                        146.095 
_chem_comp.one_letter_code                       ? 
_chem_comp.three_letter_code                     I2X 
_chem_comp.pdbx_model_coordinates_details        ? 
_chem_comp.pdbx_model_coordinates_missing_flag   N 
_chem_comp.pdbx_ideal_coordinates_details        Corina 
_chem_comp.pdbx_ideal_coordinates_missing_flag   N 
_chem_comp.pdbx_model_coordinates_db_code        8TK3 
_chem_comp.pdbx_subcomponent_list                ? 
_chem_comp.pdbx_processing_site                  RCSB 
# 
loop_
_chem_comp_atom.comp_id 
_chem_comp_atom.atom_id 
_chem_comp_atom.alt_atom_id 
_chem_comp_atom.type_symbol 
_chem_comp_atom.charge 
_chem_comp_atom.pdbx_align 
_chem_comp_atom.pdbx_aromatic_flag 
_chem_comp_atom.pdbx_leaving_atom_flag 
_chem_comp_atom.pdbx_stereo_config 
_chem_comp_atom.pdbx_backbone_atom_flag 
_chem_comp_atom.pdbx_n_terminal_atom_flag 
_chem_comp_atom.pdbx_c_terminal_atom_flag 
_chem_comp_atom.model_Cartn_x 
_chem_comp_atom.model_Cartn_y 
_chem_comp_atom.model_Cartn_z 
_chem_comp_atom.pdbx_model_Cartn_x_ideal 
_chem_comp_atom.pdbx_model_Cartn_y_ideal 
_chem_comp_atom.pdbx_model_Cartn_z_ideal 
_chem_comp_atom.pdbx_component_atom_id 
_chem_comp_atom.pdbx_component_comp_id 
_chem_comp_atom.pdbx_ordinal 
I2X C1 C1 C 0 1 Y N N N N N -10.171 -12.868 -16.811 1.860  0.422  -0.007 C1 I2X 1  
I2X C2 C2 C 0 1 Y N N N N N -10.073 -11.537 -16.439 0.535  0.825  -0.167 C2 I2X 2  
I2X C3 C3 C 0 1 Y N N N N N -10.624 -10.592 -17.277 -0.445 -0.148 -0.209 C3 I2X 3  
I2X C4 C4 C 0 1 N N N N N N -10.572 -9.097  -17.002 -1.893 0.235  -0.381 C4 I2X 4  
I2X C5 C5 C 0 1 Y N N N N N -11.242 -12.285 -18.700 1.165  -1.769 0.055  C5 I2X 5  
I2X N1 N1 N 0 1 Y N N N N N -11.203 -10.980 -18.426 -0.097 -1.421 -0.096 N1 I2X 6  
I2X O1 O1 O 0 1 N N N N N N -9.674  -13.863 -16.039 2.857  1.339  0.041  O1 I2X 7  
I2X F1 F1 F 0 1 N N N N N N -11.487 -8.647  -16.143 -2.704 -0.709 0.257  F1 I2X 8  
I2X F2 F2 F 0 1 N N N N N N -10.725 -8.352  -18.097 -2.112 1.496  0.184  F2 I2X 9  
I2X N2 N2 N 0 1 Y N N N N N -10.739 -13.260 -17.938 2.130  -0.873 0.105  N2 I2X 10 
I2X H2 H1 H 0 1 N N N N N N -9.581  -11.249 -15.522 0.282  1.871  -0.256 H2 I2X 11 
I2X H3 H2 H 0 1 N N N N N N -9.574  -8.899  -16.583 -2.137 0.266  -1.443 H3 I2X 12 
I2X H4 H3 H 0 1 N N N N N N -11.724 -12.580 -19.621 1.414  -2.816 0.144  H4 I2X 13 
I2X H1 H4 H 0 1 N N N N N N -9.828  -14.700 -16.462 3.056  1.658  0.932  H1 I2X 14 
# 
loop_
_chem_comp_bond.comp_id 
_chem_comp_bond.atom_id_1 
_chem_comp_bond.atom_id_2 
_chem_comp_bond.value_order 
_chem_comp_bond.pdbx_aromatic_flag 
_chem_comp_bond.pdbx_stereo_config 
_chem_comp_bond.pdbx_ordinal 
I2X C5 N1 DOUB Y N 1  
I2X C5 N2 SING Y N 2  
I2X N1 C3 SING Y N 3  
I2X F2 C4 SING N N 4  
I2X N2 C1 DOUB Y N 5  
I2X C3 C4 SING N N 6  
I2X C3 C2 DOUB Y N 7  
I2X C4 F1 SING N N 8  
I2X C1 C2 SING Y N 9  
I2X C1 O1 SING N N 10 
I2X C2 H2 SING N N 11 
I2X C4 H3 SING N N 12 
I2X C5 H4 SING N N 13 
I2X O1 H1 SING N N 14 
# 
loop_
_pdbx_chem_comp_descriptor.comp_id 
_pdbx_chem_comp_descriptor.type 
_pdbx_chem_comp_descriptor.program 
_pdbx_chem_comp_descriptor.program_version 
_pdbx_chem_comp_descriptor.descriptor 
I2X SMILES           ACDLabs              12.01 "Oc1cc(ncn1)C(F)F"                                              
I2X InChI            InChI                1.06  "InChI=1S/C5H4F2N2O/c6-5(7)3-1-4(10)9-2-8-3/h1-2,5H,(H,8,9,10)" 
I2X InChIKey         InChI                1.06  CRXWFHCGXRAVCL-UHFFFAOYSA-N                                     
I2X SMILES_CANONICAL CACTVS               3.385 "Oc1cc(ncn1)C(F)F"                                              
I2X SMILES           CACTVS               3.385 "Oc1cc(ncn1)C(F)F"                                              
I2X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c(ncnc1O)C(F)F"                                              
I2X SMILES           "OpenEye OEToolkits" 2.0.7 "c1c(ncnc1O)C(F)F"                                              
# 
loop_
_pdbx_chem_comp_identifier.comp_id 
_pdbx_chem_comp_identifier.type 
_pdbx_chem_comp_identifier.program 
_pdbx_chem_comp_identifier.program_version 
_pdbx_chem_comp_identifier.identifier 
I2X "SYSTEMATIC NAME" ACDLabs              12.01 "6-(difluoromethyl)pyrimidin-4-ol"       
I2X "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "6-[bis(fluoranyl)methyl]pyrimidin-4-ol" 
# 
loop_
_pdbx_chem_comp_audit.comp_id 
_pdbx_chem_comp_audit.action_type 
_pdbx_chem_comp_audit.date 
_pdbx_chem_comp_audit.processing_site 
I2X "Create component" 2023-07-25 RCSB 
I2X "Initial release"  2024-08-14 RCSB 
#