data_I3Q # _chem_comp.id I3Q _chem_comp.name "(4S,7R,11S,13E,19S)-N-[2-(2-aminoethoxy)ethyl]-4-[(furan-2-yl)methyl]-3,6,12,15,21-pentaoxo-1,3,4,5,6,7,8,9,10,12,15,16,17,18,19,20,21,22-octadecahydro-2H-7,11-methano-2,5,11,16,20-benzopentaazacyclotetracosine-19-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C34 H45 N7 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Macrocyclic Inhibitor JOMBt" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-01-10 _chem_comp.pdbx_modified_date 2022-08-19 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 679.763 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I3Q _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7TGS _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I3Q C10 C1 C 0 1 N N N 54.700 17.054 77.998 -4.916 1.779 -0.557 C10 I3Q 1 I3Q C13 C2 C 0 1 N N R 54.246 19.737 80.547 -3.723 -1.416 0.471 C13 I3Q 2 I3Q C15 C3 C 0 1 N N N 52.139 18.368 80.199 -6.174 -1.662 -0.125 C15 I3Q 3 I3Q C17 C4 C 0 1 N N N 55.203 18.723 81.336 -2.585 -2.354 0.140 C17 I3Q 4 I3Q C20 C5 C 0 1 N N N 54.591 16.146 84.100 -0.797 -4.067 -0.691 C20 I3Q 5 I3Q C21 C6 C 0 1 Y N N 54.711 17.029 85.341 0.325 -4.985 -1.102 C21 I3Q 6 I3Q C22 C7 C 0 1 Y N N 54.161 18.295 85.509 0.801 -6.017 -0.383 C22 I3Q 7 I3Q C24 C8 C 0 1 Y N N 55.274 17.738 87.369 1.941 -5.888 -2.279 C24 I3Q 8 I3Q C26 C9 C 0 1 N N N 55.795 15.793 81.993 0.770 -2.146 -0.593 C26 I3Q 9 I3Q C02 C10 C 0 1 N N N 60.683 11.969 75.641 1.296 2.525 -0.733 C02 I3Q 10 I3Q C03 C11 C 0 1 N N S 60.204 13.349 76.074 1.715 3.963 -0.564 C03 I3Q 11 I3Q C04 C12 C 0 1 N N N 60.776 14.455 75.192 1.028 4.826 -1.622 C04 I3Q 12 I3Q C05 C13 C 0 1 N N N 60.357 15.894 75.625 -0.092 5.645 -0.981 C05 I3Q 13 I3Q C07 C14 C 0 1 N N N 58.356 16.191 77.194 -1.919 4.117 -0.690 C07 I3Q 14 I3Q C08 C15 C 0 1 N N N 56.833 16.107 77.326 -3.220 3.511 -1.033 C08 I3Q 15 I3Q C09 C16 C 0 1 N N N 56.223 17.155 77.876 -3.635 2.454 -0.325 C09 I3Q 16 I3Q C12 C17 C 0 1 N N N 54.641 19.479 79.084 -3.895 -0.420 -0.671 C12 I3Q 17 I3Q C14 C18 C 0 1 N N N 52.844 19.479 80.860 -5.003 -2.204 0.683 C14 I3Q 18 I3Q C16 C19 C 0 1 N N N 52.500 18.150 78.726 -6.308 -0.145 0.061 C16 I3Q 19 I3Q C19 C20 C 0 1 N N S 55.386 16.828 83.011 -0.241 -2.944 0.187 C19 I3Q 20 I3Q C23 C21 C 0 1 Y N N 54.513 18.733 86.783 1.842 -6.600 -1.141 C23 I3Q 21 I3Q C32 C22 C 0 1 N N N 59.795 13.211 78.562 3.905 2.967 -0.429 C32 I3Q 22 I3Q C33 C23 C 0 1 N N N 60.336 13.542 79.970 3.201 1.725 0.055 C33 I3Q 23 I3Q C34 C24 C 0 1 Y N N 59.516 12.824 81.031 4.227 0.683 0.418 C34 I3Q 24 I3Q C35 C25 C 0 1 Y N N 58.265 13.320 81.431 4.071 -0.621 -0.002 C35 I3Q 25 I3Q C36 C26 C 0 1 N N N 57.716 14.614 80.797 2.877 -1.010 -0.832 C36 I3Q 26 I3Q C38 C27 C 0 1 Y N N 57.536 12.640 82.388 5.017 -1.575 0.335 C38 I3Q 27 I3Q C39 C28 C 0 1 Y N N 58.061 11.473 82.923 6.120 -1.221 1.089 C39 I3Q 28 I3Q C40 C29 C 0 1 Y N N 59.299 10.991 82.507 6.277 0.088 1.507 C40 I3Q 29 I3Q C41 C30 C 0 1 Y N N 60.021 11.668 81.563 5.333 1.038 1.171 C41 I3Q 30 I3Q C44 C31 C 0 1 N N N 60.243 9.955 74.138 0.488 0.414 0.177 C44 I3Q 31 I3Q C45 C32 C 0 1 N N N 60.312 9.977 72.594 0.700 -0.370 1.474 C45 I3Q 32 I3Q C47 C33 C 0 1 N N N 58.573 10.932 71.320 0.036 -0.442 3.776 C47 I3Q 33 I3Q C48 C34 C 0 1 N N N 57.067 10.792 71.075 -0.899 0.220 4.790 C48 I3Q 34 I3Q N06 N1 N 0 1 N N N 58.891 15.875 75.865 -1.395 5.114 -1.456 N06 I3Q 35 I3Q N11 N2 N 0 1 N N S 54.000 18.196 78.581 -5.047 0.456 -0.378 N11 I3Q 36 I3Q N18 N3 N 0 1 N N N 54.564 17.808 82.289 -1.340 -2.043 0.595 N18 I3Q 37 I3Q N31 N4 N 0 1 N N N 60.646 13.609 77.444 3.179 4.078 -0.742 N31 I3Q 38 I3Q N37 N5 N 0 1 N N N 57.217 15.588 81.791 1.968 -1.838 -0.007 N37 I3Q 39 I3Q N43 N6 N 0 1 N N N 59.857 11.290 74.620 0.982 1.783 0.347 N43 I3Q 40 I3Q N49 N7 N 0 1 N N N 56.309 11.675 71.952 -2.293 -0.086 4.443 N49 I3Q 41 I3Q O01 O1 O 0 1 N N N 61.659 11.465 76.099 1.242 2.036 -1.841 O01 I3Q 42 I3Q O25 O2 O 0 1 Y N N 55.378 16.723 86.461 1.016 -4.915 -2.252 O25 I3Q 43 I3Q O27 O3 O 0 1 N N N 54.950 15.208 81.405 0.526 -1.782 -1.724 O27 I3Q 44 I3Q O28 O4 O 0 1 N N N 56.389 18.665 81.116 -2.776 -3.358 -0.514 O28 I3Q 45 I3Q O29 O5 O 0 1 N N N 54.140 16.071 77.629 -5.878 2.431 -0.913 O29 I3Q 46 I3Q O30 O6 O 0 1 N N N 59.028 16.521 78.111 -1.309 3.722 0.284 O30 I3Q 47 I3Q O42 O7 O 0 1 N N N 58.752 12.656 78.390 5.113 2.979 -0.538 O42 I3Q 48 I3Q O46 O8 O 0 1 N N N 59.013 9.826 72.075 -0.164 0.145 2.489 O46 I3Q 49 I3Q H131 H1 H 0 0 N N N 54.520 20.766 80.824 -3.470 -0.871 1.385 H131 I3Q 50 I3Q H151 H2 H 0 0 N N N 51.059 18.567 80.259 -6.012 -1.881 -1.180 H151 I3Q 51 I3Q H152 H3 H 0 0 N N N 52.372 17.443 80.747 -7.093 -2.146 0.206 H152 I3Q 52 I3Q H201 H4 H 0 0 N N N 53.537 16.053 83.800 -1.260 -3.638 -1.580 H201 I3Q 53 I3Q H202 H5 H 0 0 N N N 55.004 15.147 84.303 -1.542 -4.632 -0.130 H202 I3Q 54 I3Q H221 H6 H 0 0 N N N 53.570 18.838 84.786 0.454 -6.339 0.588 H221 I3Q 55 I3Q H241 H7 H 0 0 N N N 55.705 17.760 88.359 2.642 -6.071 -3.080 H241 I3Q 56 I3Q H031 H8 H 0 0 N N N 59.106 13.381 76.023 1.435 4.311 0.431 H031 I3Q 57 I3Q H042 H9 H 0 0 N N N 60.429 14.289 74.161 1.759 5.499 -2.070 H042 I3Q 58 I3Q H041 H10 H 0 0 N N N 61.874 14.390 75.224 0.609 4.183 -2.397 H041 I3Q 59 I3Q H052 H11 H 0 0 N N N 60.886 16.178 76.547 -0.034 5.558 0.104 H052 I3Q 60 I3Q H051 H12 H 0 0 N N N 60.598 16.612 74.828 0.006 6.690 -1.274 H051 I3Q 61 I3Q H081 H13 H 0 0 N N N 56.281 15.241 76.990 -3.811 3.906 -1.842 H081 I3Q 62 I3Q H091 H14 H 0 0 N N N 56.769 18.023 78.215 -2.989 2.092 0.475 H091 I3Q 63 I3Q H122 H15 H 0 0 N N N 55.735 19.389 79.014 -2.993 0.184 -0.767 H122 I3Q 64 I3Q H121 H16 H 0 0 N N N 54.302 20.321 78.463 -4.075 -0.959 -1.601 H121 I3Q 65 I3Q H142 H17 H 0 0 N N N 52.289 20.397 80.617 -4.829 -3.242 0.396 H142 I3Q 66 I3Q H141 H18 H 0 0 N N N 52.789 19.292 81.943 -5.263 -2.174 1.742 H141 I3Q 67 I3Q H162 H19 H 0 0 N N N 52.045 18.942 78.113 -7.131 0.232 -0.546 H162 I3Q 68 I3Q H161 H20 H 0 0 N N N 52.127 17.170 78.395 -6.484 0.086 1.112 H161 I3Q 69 I3Q H191 H21 H 0 0 N N N 56.277 17.310 83.440 0.231 -3.369 1.073 H191 I3Q 70 I3Q H231 H22 H 0 0 N N N 54.241 19.677 87.232 2.444 -7.452 -0.861 H231 I3Q 71 I3Q H331 H23 H 0 0 N N N 61.385 13.219 80.041 2.600 1.966 0.932 H331 I3Q 72 I3Q H332 H24 H 0 0 N N N 60.275 14.628 80.137 2.556 1.342 -0.735 H332 I3Q 73 I3Q H362 H25 H 0 0 N N N 58.522 15.088 80.218 2.353 -0.113 -1.163 H362 I3Q 74 I3Q H361 H26 H 0 0 N N N 56.888 14.348 80.123 3.206 -1.583 -1.699 H361 I3Q 75 I3Q H381 H27 H 0 0 N N N 56.575 13.010 82.713 4.892 -2.597 0.008 H381 I3Q 76 I3Q H391 H28 H 0 0 N N N 57.502 10.931 83.672 6.857 -1.964 1.351 H391 I3Q 77 I3Q H401 H29 H 0 0 N N N 59.691 10.079 82.932 7.138 0.366 2.095 H401 I3Q 78 I3Q H411 H30 H 0 0 N N N 60.981 11.294 81.240 5.459 2.060 1.497 H411 I3Q 79 I3Q H441 H31 H 0 0 N N N 59.496 9.216 74.463 1.032 -0.071 -0.633 H441 I3Q 80 I3Q H442 H32 H 0 0 N N N 61.228 9.686 74.547 -0.575 0.438 -0.062 H442 I3Q 81 I3Q H452 H33 H 0 0 N N N 60.948 9.152 72.242 0.474 -1.422 1.304 H452 I3Q 82 I3Q H451 H34 H 0 0 N N N 60.735 10.935 72.257 1.737 -0.268 1.794 H451 I3Q 83 I3Q H471 H35 H 0 0 N N N 59.104 10.957 70.357 1.070 -0.296 4.086 H471 I3Q 84 I3Q H472 H36 H 0 0 N N N 58.773 11.861 71.874 -0.180 -1.510 3.726 H472 I3Q 85 I3Q H481 H37 H 0 0 N N N 56.848 11.050 70.028 -0.681 -0.160 5.788 H481 I3Q 86 I3Q H482 H38 H 0 0 N N N 56.767 9.751 71.267 -0.749 1.299 4.771 H482 I3Q 87 I3Q H061 H39 H 0 0 N N N 58.267 15.646 75.118 -1.838 5.451 -2.250 H061 I3Q 88 I3Q H181 H40 H 0 0 N N N 53.577 17.851 82.445 -1.182 -1.270 1.158 H181 I3Q 89 I3Q H311 H41 H 0 0 N N N 61.524 14.056 77.614 3.597 4.893 -1.062 H311 I3Q 90 I3Q H371 H42 H 0 0 N N N 57.871 16.115 82.334 2.205 -2.140 0.883 H371 I3Q 91 I3Q H431 H43 H 0 0 N N N 59.039 11.737 74.258 1.083 2.155 1.237 H431 I3Q 92 I3Q H492 H44 H 0 0 N N N 55.331 11.565 71.773 -2.933 0.381 5.069 H492 I3Q 93 I3Q H491 H45 H 0 0 N N N 56.501 11.443 72.906 -2.488 0.152 3.482 H491 I3Q 94 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I3Q C48 C47 SING N N 1 I3Q C48 N49 SING N N 2 I3Q C47 O46 SING N N 3 I3Q O46 C45 SING N N 4 I3Q C45 C44 SING N N 5 I3Q C44 N43 SING N N 6 I3Q N43 C02 SING N N 7 I3Q C04 C05 SING N N 8 I3Q C04 C03 SING N N 9 I3Q C05 N06 SING N N 10 I3Q C02 C03 SING N N 11 I3Q C02 O01 DOUB N N 12 I3Q N06 C07 SING N N 13 I3Q C03 N31 SING N N 14 I3Q C07 C08 SING N N 15 I3Q C07 O30 DOUB N N 16 I3Q C08 C09 DOUB N E 17 I3Q N31 C32 SING N N 18 I3Q O29 C10 DOUB N N 19 I3Q C09 C10 SING N N 20 I3Q C10 N11 SING N N 21 I3Q O42 C32 DOUB N N 22 I3Q C32 C33 SING N N 23 I3Q N11 C16 SING N N 24 I3Q N11 C12 SING N N 25 I3Q C16 C15 SING N N 26 I3Q C12 C13 SING N N 27 I3Q C33 C34 SING N N 28 I3Q C15 C14 SING N N 29 I3Q C13 C14 SING N N 30 I3Q C13 C17 SING N N 31 I3Q C36 C35 SING N N 32 I3Q C36 N37 SING N N 33 I3Q C34 C35 DOUB Y N 34 I3Q C34 C41 SING Y N 35 I3Q O28 C17 DOUB N N 36 I3Q C17 N18 SING N N 37 I3Q O27 C26 DOUB N N 38 I3Q C35 C38 SING Y N 39 I3Q C41 C40 DOUB Y N 40 I3Q N37 C26 SING N N 41 I3Q C26 C19 SING N N 42 I3Q N18 C19 SING N N 43 I3Q C38 C39 DOUB Y N 44 I3Q C40 C39 SING Y N 45 I3Q C19 C20 SING N N 46 I3Q C20 C21 SING N N 47 I3Q C21 C22 DOUB Y N 48 I3Q C21 O25 SING Y N 49 I3Q C22 C23 SING Y N 50 I3Q O25 C24 SING Y N 51 I3Q C23 C24 DOUB Y N 52 I3Q C13 H131 SING N N 53 I3Q C15 H151 SING N N 54 I3Q C15 H152 SING N N 55 I3Q C20 H201 SING N N 56 I3Q C20 H202 SING N N 57 I3Q C22 H221 SING N N 58 I3Q C24 H241 SING N N 59 I3Q C03 H031 SING N N 60 I3Q C04 H042 SING N N 61 I3Q C04 H041 SING N N 62 I3Q C05 H052 SING N N 63 I3Q C05 H051 SING N N 64 I3Q C08 H081 SING N N 65 I3Q C09 H091 SING N N 66 I3Q C12 H122 SING N N 67 I3Q C12 H121 SING N N 68 I3Q C14 H142 SING N N 69 I3Q C14 H141 SING N N 70 I3Q C16 H162 SING N N 71 I3Q C16 H161 SING N N 72 I3Q C19 H191 SING N N 73 I3Q C23 H231 SING N N 74 I3Q C33 H331 SING N N 75 I3Q C33 H332 SING N N 76 I3Q C36 H362 SING N N 77 I3Q C36 H361 SING N N 78 I3Q C38 H381 SING N N 79 I3Q C39 H391 SING N N 80 I3Q C40 H401 SING N N 81 I3Q C41 H411 SING N N 82 I3Q C44 H441 SING N N 83 I3Q C44 H442 SING N N 84 I3Q C45 H452 SING N N 85 I3Q C45 H451 SING N N 86 I3Q C47 H471 SING N N 87 I3Q C47 H472 SING N N 88 I3Q C48 H481 SING N N 89 I3Q C48 H482 SING N N 90 I3Q N06 H061 SING N N 91 I3Q N18 H181 SING N N 92 I3Q N31 H311 SING N N 93 I3Q N37 H371 SING N N 94 I3Q N43 H431 SING N N 95 I3Q N49 H492 SING N N 96 I3Q N49 H491 SING N N 97 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I3Q SMILES ACDLabs 12.01 "NCCOCCNC(=O)C1CCNC(=O)C=CC(=O)N2CCCC(C2)C(=O)NC(Cc2ccco2)C(=O)NCc2ccccc2CC(=O)N1" I3Q InChI InChI 1.03 "InChI=1S/C34H45N7O8/c35-12-17-48-18-14-37-33(46)27-11-13-36-29(42)9-10-31(44)41-15-3-7-25(22-41)32(45)40-28(20-26-8-4-16-49-26)34(47)38-21-24-6-2-1-5-23(24)19-30(43)39-27/h1-2,4-6,8-10,16,25,27-28H,3,7,11-15,17-22,35H2,(H,36,42)(H,37,46)(H,38,47)(H,39,43)(H,40,45)/b10-9+/t25-,27+,28+/m1/s1" I3Q InChIKey InChI 1.03 VANFPLOBYMMNKK-UHXQFLPPSA-N I3Q SMILES_CANONICAL CACTVS 3.385 "NCCOCCNC(=O)[C@@H]1CCNC(=O)\C=C\C(=O)[N@]2CCC[C@H](C2)C(=O)N[C@@H](Cc3occc3)C(=O)NCc4ccccc4CC(=O)N1" I3Q SMILES CACTVS 3.385 "NCCOCCNC(=O)[CH]1CCNC(=O)C=CC(=O)[N]2CCC[CH](C2)C(=O)N[CH](Cc3occc3)C(=O)NCc4ccccc4CC(=O)N1" I3Q SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(=O)N[C@@H](CCNC(=O)/C=C/C(=O)N3CCC[C@H](C3)C(=O)N[C@H](C(=O)NC2)Cc4ccco4)C(=O)NCCOCCN" I3Q SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc2c(c1)CC(=O)NC(CCNC(=O)C=CC(=O)N3CCCC(C3)C(=O)NC(C(=O)NC2)Cc4ccco4)C(=O)NCCOCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier I3Q "SYSTEMATIC NAME" ACDLabs 12.01 "(4S,7R,11S,13E,19S)-N-[2-(2-aminoethoxy)ethyl]-4-[(furan-2-yl)methyl]-3,6,12,15,21-pentaoxo-1,3,4,5,6,7,8,9,10,12,15,16,17,18,19,20,21,22-octadecahydro-2H-7,11-methano-2,5,11,16,20-benzopentaazacyclotetracosine-19-carboxamide" I3Q "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},4~{S},17~{S},22~{E})-~{N}-[2-(2-azanylethoxy)ethyl]-4-(furan-2-ylmethyl)-2,5,15,21,24-pentakis(oxidanylidene)-3,6,16,20,25-pentazatricyclo[23.3.1.0^{8,13}]nonacosa-8(13),9,11,22-tetraene-17-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I3Q "Create component" 2022-01-10 RCSB I3Q "Initial release" 2022-08-24 RCSB # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id I3Q _pdbx_chem_comp_synonyms.name "Macrocyclic Inhibitor JOMBt" _pdbx_chem_comp_synonyms.provenance AUTHOR _pdbx_chem_comp_synonyms.type ? #