data_I3V
#
_chem_comp.id I3V
_chem_comp.name "5-azanyl-6-methyl-1~{H}-pyrimidine-2,4-dione"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C5 H7 N3 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-02-10
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 141.128
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I3V
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7R5F
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I3V C01 C1 C 0 1 N N N 22.039 43.972 -11.995 1.444 2.317 -0.001 C01 I3V 1
I3V C02 C2 C 0 1 N N N 23.188 42.963 -11.930 0.544 1.109 -0.001 C02 I3V 2
I3V C03 C3 C 0 1 N N N 22.922 41.517 -11.638 1.075 -0.136 -0.000 C03 I3V 3
I3V C04 C4 C 0 1 N N N 24.061 40.553 -11.565 0.203 -1.258 0.000 C04 I3V 4
I3V C07 C5 C 0 1 N N N 25.689 42.450 -12.096 -1.632 0.190 -0.001 C07 I3V 5
I3V N06 N1 N 0 1 N N N 25.410 41.022 -11.806 -1.131 -1.058 -0.000 N06 I3V 6
I3V N09 N2 N 0 1 N N N 24.565 43.412 -12.156 -0.821 1.263 0.004 N09 I3V 7
I3V N10 N3 N 0 1 N N N 21.571 41.037 -11.420 2.470 -0.317 -0.000 N10 I3V 8
I3V O05 O1 O 0 1 N N N 23.875 39.406 -11.319 0.655 -2.388 0.001 O05 I3V 9
I3V O08 O2 O 0 1 N N N 26.813 42.798 -12.267 -2.838 0.351 -0.001 O08 I3V 10
I3V H1 H1 H 0 1 N N N 21.087 43.457 -11.801 1.662 2.608 -1.029 H1 I3V 11
I3V H2 H2 H 0 1 N N N 22.194 44.753 -11.236 0.948 3.140 0.512 H2 I3V 12
I3V H3 H3 H 0 1 N N N 22.011 44.431 -12.994 2.375 2.077 0.513 H3 I3V 13
I3V H4 H4 H 0 1 N N N 26.168 40.371 -11.776 -1.732 -1.820 -0.004 H4 I3V 14
I3V H5 H5 H 0 1 N N N 24.747 44.376 -12.352 -1.203 2.155 0.003 H5 I3V 15
I3V H6 H6 H 0 1 N N N 21.591 40.053 -11.241 3.059 0.454 -0.001 H6 I3V 16
I3V H7 H7 H 0 1 N N N 21.172 41.511 -10.635 2.843 -1.212 0.000 H7 I3V 17
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I3V O08 C07 DOUB N N 1
I3V N09 C07 SING N N 2
I3V N09 C02 SING N N 3
I3V C07 N06 SING N N 4
I3V C01 C02 SING N N 5
I3V C02 C03 DOUB N N 6
I3V N06 C04 SING N N 7
I3V C03 C04 SING N N 8
I3V C03 N10 SING N N 9
I3V C04 O05 DOUB N N 10
I3V C01 H1 SING N N 11
I3V C01 H2 SING N N 12
I3V C01 H3 SING N N 13
I3V N06 H4 SING N N 14
I3V N09 H5 SING N N 15
I3V N10 H6 SING N N 16
I3V N10 H7 SING N N 17
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I3V InChI InChI 1.06 "InChI=1S/C5H7N3O2/c1-2-3(6)4(9)8-5(10)7-2/h6H2,1H3,(H2,7,8,9,10)"
I3V InChIKey InChI 1.06 FNSSATCDUXTALE-UHFFFAOYSA-N
I3V SMILES_CANONICAL CACTVS 3.385 "CC1=C(N)C(=O)NC(=O)N1"
I3V SMILES CACTVS 3.385 "CC1=C(N)C(=O)NC(=O)N1"
I3V SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)NC(=O)N1)N"
I3V SMILES "OpenEye OEToolkits" 2.0.7 "CC1=C(C(=O)NC(=O)N1)N"
#
_pdbx_chem_comp_identifier.comp_id I3V
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "5-azanyl-6-methyl-1~{H}-pyrimidine-2,4-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I3V "Create component" 2022-02-10 PDBE
I3V "Initial release" 2022-03-02 RCSB
I3V "Modify descriptor" 2022-08-22 RCSB
#