data_I4U # _chem_comp.id I4U _chem_comp.name "4-isopropyl, uridine-5'-monophosphate" _chem_comp.type "RNA linking" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C12 H19 N2 O9 P" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-25 _chem_comp.pdbx_modified_date 2019-04-29 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 366.261 _chem_comp.one_letter_code U _chem_comp.three_letter_code I4U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6EK0 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I4U "C1'" C1 C 0 1 N N R 222.656 293.879 243.724 0.250 1.518 0.765 "C1'" I4U 1 I4U C2 C2 C 0 1 N N N 224.774 295.264 243.579 1.892 0.065 -0.290 C2 I4U 2 I4U "C2'" C3 C 0 1 N N R 221.742 294.430 242.638 0.096 2.468 -0.443 "C2'" I4U 3 I4U "C3'" C4 C 0 1 N N S 221.426 293.167 241.853 -1.385 2.314 -0.855 "C3'" I4U 4 I4U C4 C5 C 0 1 N N N 226.800 294.265 242.992 3.963 -0.372 0.635 C4 I4U 5 I4U "C4'" C6 C 0 1 N N R 221.328 292.126 242.932 -1.951 1.290 0.153 "C4'" I4U 6 I4U C5 C7 C 0 1 N N N 226.164 293.054 242.873 3.651 0.462 1.724 C5 I4U 7 I4U "C5'" C8 C 0 1 N N N 221.551 290.718 242.461 -2.955 0.363 -0.535 "C5'" I4U 8 I4U C6 C9 C 0 1 N N N 224.813 292.973 243.112 2.440 1.072 1.760 C6 I4U 9 I4U N1 N1 N 0 1 N N N 224.102 294.041 243.437 1.561 0.865 0.740 N1 I4U 10 I4U N3 N2 N 0 1 N N N 226.087 295.340 243.332 3.076 -0.544 -0.335 N3 I4U 11 I4U O2 O1 O 0 1 N N N 224.177 296.304 243.891 1.093 -0.109 -1.195 O2 I4U 12 I4U "O2'" O2 O 0 1 N N N 220.576 294.939 243.258 0.371 3.816 -0.059 "O2'" I4U 13 I4U "O3'" O3 O 0 1 N N N 220.269 293.234 241.055 -2.070 3.563 -0.738 "O3'" I4U 14 I4U O4 O4 O 0 1 N N N 228.146 294.400 242.767 5.161 -0.995 0.577 O4 I4U 15 I4U "O4'" O5 O 0 1 N N N 222.380 292.503 243.848 -0.801 0.541 0.603 "O4'" I4U 16 I4U "O5'" O6 O 0 1 N N N 222.904 290.536 242.094 -3.552 -0.499 0.436 "O5'" I4U 17 I4U OP1 O7 O 0 1 N N N 222.544 288.421 240.866 -5.784 -0.962 -0.648 OP1 I4U 18 I4U OP2 O8 O 0 1 N N N 224.916 289.286 241.359 -3.996 -2.728 -0.886 OP2 I4U 19 I4U P P1 P 0 1 N N N 223.502 289.102 241.791 -4.658 -1.608 0.063 P I4U 20 I4U C41 C10 C 0 1 N N N 229.007 293.301 242.492 5.406 -1.826 -0.559 C41 I4U 21 I4U C42 C11 C 0 1 N N N 230.209 293.323 243.418 6.048 -0.993 -1.671 C42 I4U 22 I4U C43 C12 C 0 1 N N N 229.469 293.421 241.060 6.351 -2.963 -0.165 C43 I4U 23 I4U H1 H1 H 0 1 N N N 222.421 294.394 244.667 0.117 2.066 1.698 H1 I4U 24 I4U H2 H2 H 0 1 N N N 222.260 295.173 242.014 0.754 2.161 -1.256 H2 I4U 25 I4U H3 H3 H 0 1 N N N 222.296 292.930 241.223 -1.461 1.930 -1.872 H3 I4U 26 I4U H4 H4 H 0 1 N N N 220.347 292.198 243.425 -2.421 1.803 0.992 H4 I4U 27 I4U H5 H5 H 0 1 N N N 226.721 292.172 242.594 4.363 0.612 2.522 H5 I4U 28 I4U H6 H6 H 0 1 N N N 220.908 290.520 241.591 -3.730 0.959 -1.017 H6 I4U 29 I4U H7 H7 H 0 1 N N N 221.297 290.019 243.271 -2.440 -0.237 -1.285 H7 I4U 30 I4U H8 H8 H 0 1 N N N 224.320 292.015 243.033 2.178 1.716 2.585 H8 I4U 31 I4U H9 H9 H 0 1 N N N 220.793 295.727 243.743 0.289 4.455 -0.780 H9 I4U 32 I4U H10 H10 H 0 1 N N N 220.148 292.408 240.602 -1.716 4.261 -1.306 H10 I4U 33 I4U H12 H12 H 0 1 N N N 225.032 288.920 240.490 -3.250 -3.193 -0.483 H12 I4U 34 I4U H13 H13 H 0 1 N N N 228.470 292.350 242.621 4.464 -2.243 -0.915 H13 I4U 35 I4U H14 H14 H 0 1 N N N 229.871 293.235 244.461 6.990 -0.576 -1.315 H14 I4U 36 I4U H15 H15 H 0 1 N N N 230.873 292.480 243.176 6.235 -1.626 -2.538 H15 I4U 37 I4U H16 H16 H 0 1 N N N 230.755 294.269 243.288 5.375 -0.182 -1.952 H16 I4U 38 I4U H17 H17 H 0 1 N N N 230.138 292.582 240.819 5.894 -3.556 0.627 H17 I4U 39 I4U H18 H18 H 0 1 N N N 228.597 293.398 240.390 6.538 -3.597 -1.032 H18 I4U 40 I4U H19 H19 H 0 1 N N N 230.009 294.370 240.927 7.293 -2.546 0.191 H19 I4U 41 I4U OP3 OP3 O 0 1 N N N 223.571 288.407 243.230 -5.201 -2.299 1.412 OP3 I4U 42 I4U H11 H11 H 0 1 N N N 222.979 287.664 243.252 -5.872 -2.979 1.262 H11 I4U 43 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I4U OP1 P DOUB N N 1 I4U "O3'" "C3'" SING N N 2 I4U C43 C41 SING N N 3 I4U OP2 P SING N N 4 I4U P "O5'" SING N N 5 I4U "C3'" "C2'" SING N N 6 I4U "C3'" "C4'" SING N N 7 I4U "O5'" "C5'" SING N N 8 I4U "C5'" "C4'" SING N N 9 I4U C41 O4 SING N N 10 I4U C41 C42 SING N N 11 I4U "C2'" "O2'" SING N N 12 I4U "C2'" "C1'" SING N N 13 I4U O4 C4 SING N N 14 I4U C5 C4 SING N N 15 I4U C5 C6 DOUB N N 16 I4U "C4'" "O4'" SING N N 17 I4U C4 N3 DOUB N N 18 I4U C6 N1 SING N N 19 I4U N3 C2 SING N N 20 I4U N1 C2 SING N N 21 I4U N1 "C1'" SING N N 22 I4U C2 O2 DOUB N N 23 I4U "C1'" "O4'" SING N N 24 I4U "C1'" H1 SING N N 25 I4U "C2'" H2 SING N N 26 I4U "C3'" H3 SING N N 27 I4U "C4'" H4 SING N N 28 I4U C5 H5 SING N N 29 I4U "C5'" H6 SING N N 30 I4U "C5'" H7 SING N N 31 I4U C6 H8 SING N N 32 I4U "O2'" H9 SING N N 33 I4U "O3'" H10 SING N N 34 I4U OP2 H12 SING N N 35 I4U C41 H13 SING N N 36 I4U C42 H14 SING N N 37 I4U C42 H15 SING N N 38 I4U C42 H16 SING N N 39 I4U C43 H17 SING N N 40 I4U C43 H18 SING N N 41 I4U C43 H19 SING N N 42 I4U P OP3 SING N N 43 I4U OP3 H11 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I4U InChI InChI 1.03 "InChI=1S/C12H19N2O9P/c1-6(2)22-8-3-4-14(12(17)13-8)11-10(16)9(15)7(23-11)5-21-24(18,19)20/h3-4,6-7,9-11,15-16H,5H2,1-2H3,(H2,18,19,20)/t7-,9-,10-,11-/m1/s1" I4U InChIKey InChI 1.03 ATIBKNZWTGFNRC-QCNRFFRDSA-N I4U SMILES_CANONICAL CACTVS 3.385 "CC(C)OC1=NC(=O)N(C=C1)[C@@H]2O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H]2O" I4U SMILES CACTVS 3.385 "CC(C)OC1=NC(=O)N(C=C1)[CH]2O[CH](CO[P](O)(O)=O)[CH](O)[CH]2O" I4U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC(C)OC1=NC(=O)N(C=C1)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" I4U SMILES "OpenEye OEToolkits" 2.0.6 "CC(C)OC1=NC(=O)N(C=C1)C2C(C(C(O2)COP(=O)(O)O)O)O" # _pdbx_chem_comp_identifier.comp_id I4U _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.6 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-3,4-bis(oxidanyl)-5-(2-oxidanylidene-4-propan-2-yloxy-pyrimidin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I4U "Create component" 2017-09-25 EBI I4U "Initial release" 2018-01-24 RCSB I4U "Modify one letter code" 2019-04-29 EBI ##