data_I54
#
_chem_comp.id I54
_chem_comp.name "(1S,2S)-2-[(N-{[(2-chlorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H30 Cl N3 O8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-01-19
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 519.996
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I54
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7TIW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I54 C1 C1 C 0 1 Y N N N N N -9.382 10.260 67.968 -6.074 -0.367 -0.797 C1 I54 1
I54 C2 C2 C 0 1 Y N N N N N -8.662 11.387 68.357 -5.780 -1.544 -1.459 C2 I54 2
I54 C3 C3 C 0 1 Y N N N N N -7.617 11.865 67.574 -6.778 -2.227 -2.129 C3 I54 3
I54 C4 C4 C 0 1 Y N N N N N -7.277 11.214 66.394 -8.069 -1.733 -2.137 C4 I54 4
I54 C5 C5 C 0 1 Y N N N N N -7.987 10.086 66.000 -8.364 -0.557 -1.475 C5 I54 5
I54 C6 C6 C 0 1 Y N N N N N -9.035 9.611 66.783 -7.367 0.124 -0.799 C6 I54 6
I54 C7 C7 C 0 1 N N N N N N -10.563 9.705 68.840 -4.986 0.378 -0.067 C7 I54 7
I54 C9 C8 C 0 1 N N N N N N -11.643 11.686 69.456 -2.650 0.198 0.391 C9 I54 8
I54 C12 C9 C 0 1 N N S N N N -12.117 14.075 69.764 -0.279 0.167 0.951 C12 I54 9
I54 C13 C10 C 0 1 N N N N N N -11.695 15.155 70.798 -0.232 -0.279 2.414 C13 I54 10
I54 C14 C11 C 0 1 N N N N N N -12.470 14.883 72.134 -1.436 0.296 3.161 C14 I54 11
I54 C15 C12 C 0 1 N N N N N N -12.003 15.927 73.167 -1.458 -0.250 4.590 C15 I54 12
I54 C16 C13 C 0 1 N N N N N N -13.961 15.032 71.863 -1.331 1.822 3.200 C16 I54 13
I54 C17 C14 C 0 1 N N N N N N -11.534 14.528 68.433 0.969 -0.296 0.244 C17 I54 14
I54 C20 C15 C 0 1 N N S N N N -11.771 15.461 66.237 3.391 -0.333 -0.016 C20 I54 15
I54 C21 C16 C 0 1 N N S N N N -12.038 16.942 66.035 3.915 -1.604 0.655 C21 I54 16
I54 C24 C17 C 0 1 N N N N N N -12.351 14.654 65.052 4.457 0.762 0.062 C24 I54 17
I54 C25 C18 C 0 1 N N S N N N -11.705 13.219 65.012 3.949 2.020 -0.645 C25 I54 18
I54 C26 C19 C 0 1 N N N N N N -10.233 13.338 64.761 3.790 1.761 -2.161 C26 I54 19
I54 C27 C20 C 0 1 N N N N N N -9.952 12.053 63.874 4.223 3.119 -2.759 C27 I54 20
I54 C29 C21 C 0 1 N N N N N N -12.295 12.412 63.886 4.977 3.126 -0.560 C29 I54 21
I54 CL1 CL1 CL 0 0 N N N N N N -9.883 8.237 66.282 -7.736 1.602 0.034 CL1 I54 22
I54 N11 N1 N 0 1 N N N N N N -11.539 12.804 70.170 -1.454 -0.417 0.300 N11 I54 23
I54 N19 N2 N 0 1 N N N N N N -12.338 15.018 67.502 2.178 0.117 0.671 N19 I54 24
I54 N28 N3 N 0 1 N N N N N N -11.320 11.747 63.256 5.115 3.720 -1.761 N28 I54 25
I54 O10 O1 O 0 1 N N N N N N -12.298 11.634 68.441 -2.754 1.237 1.014 O10 I54 26
I54 O18 O2 O 0 1 N N N N N N -10.349 14.454 68.246 0.884 -1.040 -0.710 O18 I54 27
I54 O22 O3 O 0 1 N N N N N N -11.533 17.518 65.093 2.875 -2.583 0.700 O22 I54 28
I54 O30 O4 O 0 1 N N N N N N -13.467 12.351 63.601 5.587 3.432 0.443 O30 I54 29
I54 O8 O5 O 0 1 N N N N N N -10.985 10.619 69.883 -3.731 -0.338 -0.207 O8 I54 30
I54 H1 H1 H 0 1 N N N N N N -8.918 11.894 69.275 -4.772 -1.930 -1.454 H1 I54 31
I54 H2 H2 H 0 1 N N N N N N -7.069 12.743 67.883 -6.549 -3.147 -2.647 H2 I54 32
I54 H3 H3 H 0 1 N N N N N N -6.464 11.583 65.786 -8.848 -2.267 -2.662 H3 I54 33
I54 H4 H4 H 0 1 N N N N N N -7.725 9.577 65.084 -9.373 -0.171 -1.482 H4 I54 34
I54 H5 H5 H 0 1 N N N N N N -11.421 9.508 68.181 -4.883 1.378 -0.489 H5 I54 35
I54 H6 H6 H 0 1 N N N N N N -10.238 8.765 69.310 -5.244 0.455 0.989 H6 I54 36
I54 H7 H7 H 0 1 N N N N N N -13.214 14.018 69.704 -0.341 1.255 0.904 H7 I54 37
I54 H8 H8 H 0 1 N N N N N N -10.611 15.096 70.977 -0.260 -1.367 2.462 H8 I54 38
I54 H9 H9 H 0 1 N N N N N N -11.949 16.155 70.417 0.688 0.082 2.874 H9 I54 39
I54 H10 H10 H 0 1 N N N N N N -12.246 13.868 72.494 -2.354 0.008 2.648 H10 I54 40
I54 H11 H11 H 0 1 N N N N N N -12.530 15.763 74.119 -0.540 0.038 5.103 H11 I54 41
I54 H12 H12 H 0 1 N N N N N N -10.919 15.826 73.326 -2.316 0.160 5.123 H12 I54 42
I54 H13 H13 H 0 1 N N N N N N -12.226 16.937 72.794 -1.533 -1.337 4.563 H13 I54 43
I54 H14 H14 H 0 1 N N N N N N -14.523 14.845 72.790 -0.414 2.111 3.713 H14 I54 44
I54 H15 H15 H 0 1 N N N N N N -14.169 16.052 71.508 -1.316 2.211 2.182 H15 I54 45
I54 H16 H16 H 0 1 N N N N N N -14.268 14.307 71.095 -2.189 2.232 3.733 H16 I54 46
I54 H17 H17 H 0 1 N N N N N N -10.682 15.305 66.254 3.161 -0.542 -1.060 H17 I54 47
I54 H18 H18 H 0 1 N N N N N N -13.120 16.958 65.839 4.240 -1.372 1.669 H18 I54 48
I54 H19 H19 H 0 1 N N N N N N -12.131 15.179 64.111 4.667 0.991 1.107 H19 I54 49
I54 H20 H20 H 0 1 N N N N N N -13.440 14.560 65.173 5.370 0.415 -0.424 H20 I54 50
I54 H21 H21 H 0 1 N N N N N N -11.886 12.715 65.973 3.003 2.343 -0.212 H21 I54 51
I54 H22 H22 H 0 1 N N N N N N -9.662 13.309 65.701 4.452 0.961 -2.492 H22 I54 52
I54 H23 H23 H 0 1 N N N N N N -9.993 14.262 64.215 2.754 1.537 -2.412 H23 I54 53
I54 H24 H24 H 0 1 N N N N N N -9.603 11.214 64.494 4.756 2.965 -3.697 H24 I54 54
I54 H25 H25 H 0 1 N N N N N N -9.206 12.267 63.094 3.352 3.755 -2.920 H25 I54 55
I54 H26 H26 H 0 1 N N N N N N -11.036 12.768 71.033 -1.372 -1.245 -0.197 H26 I54 56
I54 H27 H27 H 0 1 N N N N N N -13.322 15.083 67.666 2.246 0.713 1.434 H27 I54 57
I54 H28 H28 H 0 1 N N N N N N -11.465 11.130 62.482 5.725 4.452 -1.942 H28 I54 58
I54 S1 S1 S 0 1 N Y N N N N ? ? ? 5.317 -2.255 -0.295 S1 I54 59
I54 O3 O6 O 0 1 N Y N N N N ? ? ? 5.837 -3.425 0.322 O3 I54 60
I54 O1 O7 O 0 1 N Y N N N N ? ? ? 5.034 -2.225 -1.687 O1 I54 61
I54 O2 O8 O 0 1 N Y N N N N ? ? ? 6.414 -1.216 -0.112 O2 I54 62
I54 H29 H29 H 0 1 N N N N N N -11.793 18.432 65.104 2.092 -2.302 1.193 H29 I54 63
I54 H30 H30 H 0 1 N Y N N N N ? ? ? 7.239 -1.430 -0.570 H30 I54 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I54 N28 C27 SING N N 1
I54 N28 C29 SING N N 2
I54 O30 C29 DOUB N N 3
I54 C27 C26 SING N N 4
I54 C29 C25 SING N N 5
I54 C26 C25 SING N N 6
I54 C25 C24 SING N N 7
I54 C24 C20 SING N N 8
I54 O22 C21 SING N N 9
I54 C5 C4 DOUB Y N 10
I54 C5 C6 SING Y N 11
I54 C21 C20 SING N N 12
I54 C20 N19 SING N N 13
I54 CL1 C6 SING N N 14
I54 C4 C3 SING Y N 15
I54 C6 C1 DOUB Y N 16
I54 N19 C17 SING N N 17
I54 C3 C2 DOUB Y N 18
I54 C1 C2 SING Y N 19
I54 C1 C7 SING N N 20
I54 O18 C17 DOUB N N 21
I54 C17 C12 SING N N 22
I54 O10 C9 DOUB N N 23
I54 C7 O8 SING N N 24
I54 C9 O8 SING N N 25
I54 C9 N11 SING N N 26
I54 C12 N11 SING N N 27
I54 C12 C13 SING N N 28
I54 C13 C14 SING N N 29
I54 C16 C14 SING N N 30
I54 C14 C15 SING N N 31
I54 C2 H1 SING N N 32
I54 C3 H2 SING N N 33
I54 C4 H3 SING N N 34
I54 C5 H4 SING N N 35
I54 C7 H5 SING N N 36
I54 C7 H6 SING N N 37
I54 C12 H7 SING N N 38
I54 C13 H8 SING N N 39
I54 C13 H9 SING N N 40
I54 C14 H10 SING N N 41
I54 C15 H11 SING N N 42
I54 C15 H12 SING N N 43
I54 C15 H13 SING N N 44
I54 C16 H14 SING N N 45
I54 C16 H15 SING N N 46
I54 C16 H16 SING N N 47
I54 C20 H17 SING N N 48
I54 C21 H18 SING N N 49
I54 C24 H19 SING N N 50
I54 C24 H20 SING N N 51
I54 C25 H21 SING N N 52
I54 C26 H22 SING N N 53
I54 C26 H23 SING N N 54
I54 C27 H24 SING N N 55
I54 C27 H25 SING N N 56
I54 N11 H26 SING N N 57
I54 N19 H27 SING N N 58
I54 N28 H28 SING N N 59
I54 C21 S1 SING N N 60
I54 S1 O3 DOUB N N 61
I54 S1 O1 DOUB N N 62
I54 S1 O2 SING N N 63
I54 O22 H29 SING N N 64
I54 O2 H30 SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I54 SMILES ACDLabs 12.01 "CC(C)CC(NC(=O)OCc1ccccc1Cl)C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O"
I54 InChI InChI 1.03 "InChI=1S/C21H30ClN3O8S/c1-12(2)9-16(25-21(29)33-11-14-5-3-4-6-15(14)22)19(27)24-17(20(28)34(30,31)32)10-13-7-8-23-18(13)26/h3-6,12-13,16-17,20,28H,7-11H2,1-2H3,(H,23,26)(H,24,27)(H,25,29)(H,30,31,32)/t13-,16-,17-,20?/m0/s1"
I54 InChIKey InChI 1.03 VHSJYWSZMIFGBF-GSVKDTAISA-N
I54 SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OCc1ccccc1Cl)C(=O)N[C@@H](C[C@@H]2CCNC2=O)[C@@H](O)[S](O)(=O)=O"
I54 SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OCc1ccccc1Cl)C(=O)N[CH](C[CH]2CCNC2=O)[CH](O)[S](O)(=O)=O"
I54 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)S(=O)(=O)O)NC(=O)OCc2ccccc2Cl"
I54 SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)S(=O)(=O)O)NC(=O)OCc2ccccc2Cl"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
I54 "SYSTEMATIC NAME" ACDLabs 12.01 "(1S,2S)-2-[(N-{[(2-chlorophenyl)methoxy]carbonyl}-L-leucyl)amino]-1-hydroxy-3-[(3S)-2-oxopyrrolidin-3-yl]propane-1-sulfonic acid"
I54 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(1~{R},2~{S})-2-[[(2~{S})-2-[(2-chlorophenyl)methoxycarbonylamino]-4-methyl-pentanoyl]amino]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propane-1-sulfonic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I54 "Create component" 2022-01-19 RCSB
I54 "Initial release" 2022-05-04 RCSB
I54 "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id I54
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C21
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#