data_I55 # _chem_comp.id I55 _chem_comp.name "[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{E})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-(2-azanylethanoylamino)-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C15 H25 N7 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-09 _chem_comp.pdbx_modified_date 2023-05-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 431.401 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I55 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XXC _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I55 C4 C1 C 0 1 N N R -11.489 -16.439 -7.318 0.809 -0.114 -0.121 C4 I55 1 I55 C14 C2 C 0 1 N N N -7.252 -15.367 -8.522 5.429 -0.302 0.737 C14 I55 2 I55 C5 C3 C 0 1 N N N -13.462 -15.600 -6.150 -1.493 -0.151 0.552 C5 I55 3 I55 C6 C4 C 0 1 N N S -15.562 -15.040 -5.427 -3.768 -0.339 0.678 C6 I55 4 I55 C11 C5 C 0 1 N N R -9.533 -17.805 -7.063 2.772 -1.389 -0.645 C11 I55 5 I55 C7 C6 C 0 1 N N N -16.400 -14.629 -4.245 -4.774 -1.271 1.290 C7 I55 6 I55 C8 C7 C 0 1 N N N -17.708 -16.782 -4.452 -5.597 -1.512 -1.035 C8 I55 7 I55 C9 C8 C 0 1 N N R -16.783 -17.135 -5.624 -4.240 -1.103 -1.611 C9 I55 8 I55 C10 C9 C 0 1 N N S -15.389 -16.565 -5.353 -3.198 -1.154 -0.522 C10 I55 9 I55 C12 C10 C 0 1 N N N -8.600 -18.232 -5.972 3.654 -2.525 -0.125 C12 I55 10 I55 C13 C11 C 0 1 N N R -8.836 -17.107 -8.220 3.614 -0.119 -0.802 C13 I55 11 I55 N1 N1 N 0 1 N N N -13.342 -12.370 -10.844 -1.745 4.592 0.817 N1 I55 12 I55 N2 N2 N 0 1 N N N -11.912 -15.328 -9.452 0.661 2.253 -0.728 N2 I55 13 I55 C3 C12 C 0 1 N N R -10.897 -15.741 -8.505 1.572 1.207 -0.257 C3 I55 14 I55 N3 N3 N 0 1 N N N -12.218 -15.477 -6.538 -0.246 0.033 0.884 N3 I55 15 I55 C1 C13 C 0 1 N N N -13.114 -13.829 -10.904 -1.036 4.008 -0.330 C1 I55 16 I55 C2 C14 C 0 1 N N N -11.956 -14.119 -9.994 -0.099 2.932 0.155 C2 I55 17 I55 O1 O1 O 0 1 N N N -11.167 -13.228 -9.703 -0.028 2.677 1.338 O1 I55 18 I55 N4 N4 N 0 1 N N N -14.170 -14.612 -5.528 -2.562 -0.036 1.426 N4 I55 19 I55 O2 O2 O 0 1 N N N -16.153 -13.573 -3.661 -4.862 -1.464 2.484 O2 I55 20 I55 N5 N5 N 0 1 N N N -17.390 -15.458 -3.887 -5.580 -1.878 0.371 N5 I55 21 I55 O3 O3 O 0 1 N N N -17.333 -16.612 -6.853 -4.322 0.226 -2.130 O3 I55 22 I55 N6 N6 N 0 1 N N N -14.272 -16.705 -6.275 -1.925 -0.482 -0.728 N6 I55 23 I55 O4 O4 O 0 1 N N N -10.487 -16.932 -6.453 1.712 -1.145 0.282 O4 I55 24 I55 O5 O5 O 0 1 N N N -9.380 -18.922 -5.014 2.898 -3.737 -0.088 O5 I55 25 I55 O6 O6 O 0 1 N N N -8.112 -15.967 -7.693 4.217 0.222 0.474 O6 I55 26 I55 N7 N7 N 0 1 N N N -6.843 -14.169 -8.033 6.045 -0.025 1.903 N7 I55 27 I55 O7 O7 O 0 1 N N N -6.908 -15.842 -9.585 5.967 -1.026 -0.077 O7 I55 28 I55 C15 C15 C 0 1 N N S -9.892 -16.643 -9.210 2.711 1.028 -1.265 C15 I55 29 I55 O8 O8 O 0 1 N N N -10.614 -17.754 -9.734 2.168 0.720 -2.550 O8 I55 30 I55 H1 H1 H 0 1 N N N -12.153 -17.249 -7.655 0.363 -0.376 -1.081 H1 I55 31 I55 H2 H2 H 0 1 N N N -16.098 -14.789 -6.354 -4.250 0.576 0.333 H2 I55 32 I55 H3 H3 H 0 1 N N N -10.047 -18.695 -7.455 2.352 -1.668 -1.612 H3 I55 33 I55 H4 H4 H 0 1 N N N -18.749 -16.777 -4.808 -6.289 -0.680 -1.166 H4 I55 34 I55 H5 H5 H 0 1 N N N -17.593 -17.542 -3.665 -5.970 -2.361 -1.608 H5 I55 35 I55 H6 H6 H 0 1 N N N -16.706 -18.230 -5.690 -3.965 -1.790 -2.411 H6 I55 36 I55 H7 H7 H 0 1 N N N -15.078 -16.842 -4.335 -3.029 -2.188 -0.220 H7 I55 37 I55 H8 H8 H 0 1 N N N -7.823 -18.897 -6.377 4.511 -2.652 -0.787 H8 I55 38 I55 H9 H9 H 0 1 N N N -8.127 -17.352 -5.512 4.003 -2.284 0.879 H9 I55 39 I55 H10 H10 H 0 1 N N N -8.148 -17.808 -8.715 4.396 -0.290 -1.541 H10 I55 40 I55 H11 H11 H 0 1 N N N -14.109 -12.127 -11.438 -2.380 5.317 0.518 H11 I55 41 I55 H12 H12 H 0 1 N N N -13.552 -12.104 -9.903 -2.230 3.881 1.343 H12 I55 42 I55 H14 H14 H 0 1 N N N -12.616 -15.989 -9.710 0.604 2.456 -1.674 H14 I55 43 I55 H15 H15 H 0 1 N N N -10.360 -14.850 -8.148 1.983 1.491 0.712 H15 I55 44 I55 H16 H16 H 0 1 N N N -14.010 -14.368 -10.562 -1.759 3.575 -1.021 H16 I55 45 I55 H17 H17 H 0 1 N N N -12.874 -14.134 -11.933 -0.466 4.785 -0.839 H17 I55 46 I55 H18 H18 H 0 1 N N N -13.799 -13.744 -5.198 -2.513 0.203 2.365 H18 I55 47 I55 H19 H19 H 0 1 N N N -17.984 -15.141 -3.148 -6.169 -2.588 0.671 H19 I55 48 I55 H20 H20 H 0 1 N N N -18.196 -16.981 -6.996 -4.974 0.333 -2.836 H20 I55 49 I55 H21 H21 H 0 1 N N N -14.119 -17.475 -6.895 -1.477 -0.304 -1.570 H21 I55 50 I55 H22 H22 H 0 1 N N N -8.823 -19.212 -4.301 3.395 -4.502 0.232 H22 I55 51 I55 H23 H23 H 0 1 N N N -6.209 -13.604 -8.560 5.615 0.553 2.553 H23 I55 52 I55 H24 H24 H 0 1 N N N -7.176 -13.851 -7.145 6.918 -0.403 2.092 H24 I55 53 I55 H25 H25 H 0 1 N N N -9.407 -16.080 -10.021 3.293 1.948 -1.325 H25 I55 54 I55 H26 H26 H 0 1 N N N -10.014 -18.339 -10.182 2.835 0.594 -3.239 H26 I55 55 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I55 C1 N1 SING N N 1 I55 C1 C2 SING N N 2 I55 C2 O1 DOUB N N 3 I55 C2 N2 SING N N 4 I55 O8 C15 SING N N 5 I55 O7 C14 DOUB N N 6 I55 N2 C3 SING N N 7 I55 C15 C3 SING N N 8 I55 C15 C13 SING N N 9 I55 C14 N7 SING N N 10 I55 C14 O6 SING N N 11 I55 C3 C4 SING N N 12 I55 C13 O6 SING N N 13 I55 C13 C11 SING N N 14 I55 C4 N3 SING N N 15 I55 C4 O4 SING N N 16 I55 C11 O4 SING N N 17 I55 C11 C12 SING N N 18 I55 O3 C9 SING N N 19 I55 N3 C5 DOUB N N 20 I55 N6 C5 SING N N 21 I55 N6 C10 SING N N 22 I55 C5 N4 SING N N 23 I55 C12 O5 SING N N 24 I55 C9 C10 SING N N 25 I55 C9 C8 SING N N 26 I55 N4 C6 SING N N 27 I55 C6 C10 SING N N 28 I55 C6 C7 SING N N 29 I55 C8 N5 SING N N 30 I55 C7 N5 SING N N 31 I55 C7 O2 DOUB N N 32 I55 C4 H1 SING N N 33 I55 C6 H2 SING N N 34 I55 C11 H3 SING N N 35 I55 C8 H4 SING N N 36 I55 C8 H5 SING N N 37 I55 C9 H6 SING N N 38 I55 C10 H7 SING N N 39 I55 C12 H8 SING N N 40 I55 C12 H9 SING N N 41 I55 C13 H10 SING N N 42 I55 N1 H11 SING N N 43 I55 N1 H12 SING N N 44 I55 N2 H14 SING N N 45 I55 C3 H15 SING N N 46 I55 C1 H16 SING N N 47 I55 C1 H17 SING N N 48 I55 N4 H18 SING N N 49 I55 N5 H19 SING N N 50 I55 O3 H20 SING N N 51 I55 N6 H21 SING N N 52 I55 O5 H22 SING N N 53 I55 N7 H23 SING N N 54 I55 N7 H24 SING N N 55 I55 C15 H25 SING N N 56 I55 O8 H26 SING N N 57 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I55 InChI InChI 1.03 "InChI=1S/C15H25N7O8/c16-1-6(25)19-9-10(26)11(30-14(17)28)5(3-23)29-13(9)22-15-20-7-4(24)2-18-12(27)8(7)21-15/h4-5,7-11,13,23-24,26H,1-3,16H2,(H2,17,28)(H,18,27)(H,19,25)(H2,20,21,22)/t4-,5-,7-,8+,9-,10+,11+,13-/m1/s1" I55 InChIKey InChI 1.03 CSLHSYMCGVEZTI-JJYCVBLVSA-N I55 SMILES_CANONICAL CACTVS 3.385 "NCC(=O)N[C@@H]1[C@H](O)[C@@H](OC(N)=O)[C@@H](CO)O[C@H]1N=C2N[C@@H]3[C@H](O)CNC(=O)[C@H]3N2" I55 SMILES CACTVS 3.385 "NCC(=O)N[CH]1[CH](O)[CH](OC(N)=O)[CH](CO)O[CH]1N=C2N[CH]3[CH](O)CNC(=O)[CH]3N2" I55 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1[C@H]([C@@H]2[C@@H](C(=O)N1)N/C(=N/[C@H]3[C@@H]([C@@H]([C@H]([C@H](O3)CO)OC(=O)N)O)NC(=O)CN)/N2)O" I55 SMILES "OpenEye OEToolkits" 2.0.7 "C1C(C2C(C(=O)N1)NC(=NC3C(C(C(C(O3)CO)OC(=O)N)O)NC(=O)CN)N2)O" # _pdbx_chem_comp_identifier.comp_id I55 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{R},4~{S},5~{R},6~{R})-6-[(~{E})-[(3~{a}~{S},7~{R},7~{a}~{S})-7-oxidanyl-4-oxidanylidene-3,3~{a},5,6,7,7~{a}-hexahydro-1~{H}-imidazo[4,5-c]pyridin-2-ylidene]amino]-5-(2-azanylethanoylamino)-2-(hydroxymethyl)-4-oxidanyl-oxan-3-yl] carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I55 "Create component" 2022-06-09 PDBJ I55 "Initial release" 2023-05-31 RCSB #