data_I5X # _chem_comp.id I5X _chem_comp.name "~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)-3-methylsulfanyl-propyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H28 N4 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-06-10 _chem_comp.pdbx_modified_date 2023-03-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.559 _chem_comp.one_letter_code ? _chem_comp.three_letter_code I5X _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7XUA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal I5X C10 C1 C 0 1 N N S -6.713 7.927 49.416 -2.191 -0.841 -0.524 C10 I5X 1 I5X C13 C2 C 0 1 Y N N -3.022 8.385 50.271 1.530 -0.117 -0.599 C13 I5X 2 I5X C14 C3 C 0 1 Y N N -2.619 7.181 51.094 2.726 -0.546 -1.104 C14 I5X 3 I5X C21 C4 C 0 1 N N N -0.149 6.762 52.141 5.158 0.364 -0.841 C21 I5X 4 I5X C27 C5 C 0 1 N N N -3.405 5.974 51.551 2.949 -1.734 -2.004 C27 I5X 5 I5X C29 C6 C 0 1 N N N 1.667 7.645 49.529 6.058 3.224 1.540 C29 I5X 6 I5X C30 C7 C 0 1 N N N 2.845 9.070 51.163 5.426 0.846 1.956 C30 I5X 7 I5X C1 C8 C 0 1 Y N N -9.389 11.478 51.613 -4.736 3.411 0.222 C1 I5X 8 I5X C12 C9 C 0 1 N N N -4.393 8.579 49.711 0.223 -0.740 -0.841 C12 I5X 9 I5X C15 C10 C 0 1 Y N N -1.200 7.477 51.378 3.703 0.334 -0.623 C15 I5X 10 I5X C16 C11 C 0 1 Y N N -0.918 8.745 50.738 3.063 1.283 0.174 C16 I5X 11 I5X C18 C12 C 0 1 N N N 0.424 9.348 50.792 3.800 2.398 0.871 C18 I5X 12 I5X C19 C13 C 0 1 N N N 1.541 8.331 50.883 5.281 2.026 0.992 C19 I5X 13 I5X C2 C14 C 0 1 Y N N -9.697 12.784 51.235 -6.086 3.688 0.262 C2 I5X 14 I5X C20 C15 C 0 1 N N N 1.278 7.282 51.988 5.854 1.634 -0.373 C20 I5X 15 I5X C22 C16 C 0 1 N N N -7.637 6.806 49.874 -2.404 -1.982 0.472 C22 I5X 16 I5X C23 C17 C 0 1 N N N -7.358 5.480 49.179 -1.375 -3.084 0.213 C23 I5X 17 I5X C25 C18 C 0 1 N N N -9.175 5.190 46.992 -0.336 -5.626 0.935 C25 I5X 18 I5X C3 C19 C 0 1 Y N N -9.227 13.328 50.035 -7.017 2.677 0.071 C3 I5X 19 I5X C4 C20 C 0 1 Y N N -8.430 12.589 49.161 -6.614 1.393 -0.160 C4 I5X 20 I5X C5 C21 C 0 1 Y N N -8.099 11.280 49.497 -5.251 1.088 -0.204 C5 I5X 21 I5X C6 C22 C 0 1 Y N N -8.597 10.703 50.770 -4.308 2.112 -0.016 C6 I5X 22 I5X C8 C23 C 0 1 Y N N -7.384 9.215 49.719 -3.278 0.188 -0.350 C8 I5X 23 I5X N11 N1 N 0 1 N N N -5.424 7.823 50.085 -0.887 -0.218 -0.283 N11 I5X 24 I5X N17 N2 N 0 1 Y N N -1.977 9.243 50.089 1.760 1.000 0.182 N17 I5X 25 I5X N7 N3 N 0 1 Y N N -8.126 9.451 50.824 -3.069 1.511 -0.114 N7 I5X 26 I5X N9 N4 N 0 1 Y N N -7.372 10.308 48.906 -4.554 -0.059 -0.407 N9 I5X 27 I5X O26 O1 O 0 1 N N N -4.536 9.475 48.893 0.142 -1.729 -1.546 O26 I5X 28 I5X O28 O2 O 0 1 N N N -0.426 5.836 52.892 5.758 -0.555 -1.355 O28 I5X 29 I5X S24 S1 S 0 1 N N N -7.529 5.641 47.431 -1.627 -4.437 1.394 S24 I5X 30 I5X H1 H1 H 0 1 N N N -6.570 7.842 48.329 -2.223 -1.235 -1.540 H1 I5X 31 I5X H2 H2 H 0 1 N N N -3.323 5.176 50.799 2.869 -1.421 -3.045 H2 I5X 32 I5X H3 H3 H 0 1 N N N -3.003 5.616 52.510 3.942 -2.145 -1.823 H3 I5X 33 I5X H4 H4 H 0 1 N N N -4.462 6.251 51.677 2.197 -2.494 -1.795 H4 I5X 34 I5X H5 H5 H 0 1 N N N 2.474 6.899 49.569 5.668 3.492 2.522 H5 I5X 35 I5X H6 H6 H 0 1 N N N 0.719 7.146 49.281 7.113 2.963 1.628 H6 I5X 36 I5X H7 H7 H 0 1 N N N 1.899 8.395 48.758 5.949 4.069 0.862 H7 I5X 37 I5X H8 H8 H 0 1 N N N 2.779 9.575 52.138 5.029 1.124 2.932 H8 I5X 38 I5X H9 H9 H 0 1 N N N 3.678 8.351 51.178 4.873 -0.009 1.569 H9 I5X 39 I5X H10 H10 H 0 1 N N N 3.020 9.817 50.375 6.480 0.585 2.053 H10 I5X 40 I5X H11 H11 H 0 1 N N N -9.758 11.074 52.544 -4.016 4.201 0.372 H11 I5X 41 I5X H12 H12 H 0 1 N N N 0.573 9.948 49.882 3.702 3.317 0.292 H12 I5X 42 I5X H13 H13 H 0 1 N N N 0.476 10.002 51.675 3.380 2.547 1.865 H13 I5X 43 I5X H14 H14 H 0 1 N N N -10.313 13.390 51.884 -6.421 4.699 0.442 H14 I5X 44 I5X H15 H15 H 0 1 N N N 1.924 6.416 51.781 6.925 1.453 -0.283 H15 I5X 45 I5X H16 H16 H 0 1 N N N 1.568 7.734 52.948 5.676 2.436 -1.090 H16 I5X 46 I5X H17 H17 H 0 1 N N N -8.676 7.100 49.663 -2.283 -1.605 1.488 H17 I5X 47 I5X H18 H18 H 0 1 N N N -7.508 6.667 50.958 -3.408 -2.387 0.352 H18 I5X 48 I5X H19 H19 H 0 1 N N N -8.070 4.725 49.543 -1.495 -3.461 -0.803 H19 I5X 49 I5X H20 H20 H 0 1 N N N -6.332 5.159 49.413 -0.370 -2.679 0.333 H20 I5X 50 I5X H21 H21 H 0 1 N N N -9.303 5.284 45.904 -0.393 -6.496 1.590 H21 I5X 51 I5X H22 H22 H 0 1 N N N -9.363 4.150 47.295 -0.482 -5.940 -0.099 H22 I5X 52 I5X H23 H23 H 0 1 N N N -9.886 5.855 47.503 0.642 -5.158 1.037 H23 I5X 53 I5X H24 H24 H 0 1 N N N -9.487 14.344 49.779 -8.072 2.909 0.105 H24 I5X 54 I5X H25 H25 H 0 1 N N N -8.076 13.025 48.239 -7.348 0.613 -0.303 H25 I5X 55 I5X H26 H26 H 0 1 N N N -5.311 7.174 50.837 -0.822 0.570 0.279 H26 I5X 56 I5X H27 H27 H 0 1 N N N -1.999 10.094 49.564 1.079 1.502 0.657 H27 I5X 57 I5X H28 H28 H 0 1 N N N -8.295 8.797 51.561 -2.208 1.951 -0.030 H28 I5X 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal I5X C25 S24 SING N N 1 I5X S24 C23 SING N N 2 I5X O26 C12 DOUB N N 3 I5X N9 C5 SING Y N 4 I5X N9 C8 DOUB Y N 5 I5X C4 C5 SING Y N 6 I5X C4 C3 DOUB Y N 7 I5X C23 C22 SING N N 8 I5X C10 C8 SING N N 9 I5X C10 C22 SING N N 10 I5X C10 N11 SING N N 11 I5X C5 C6 DOUB Y N 12 I5X C29 C19 SING N N 13 I5X C12 N11 SING N N 14 I5X C12 C13 SING N N 15 I5X C8 N7 SING Y N 16 I5X C3 C2 SING Y N 17 I5X N17 C13 SING Y N 18 I5X N17 C16 SING Y N 19 I5X C13 C14 DOUB Y N 20 I5X C16 C18 SING N N 21 I5X C16 C15 DOUB Y N 22 I5X C6 N7 SING Y N 23 I5X C6 C1 SING Y N 24 I5X C18 C19 SING N N 25 I5X C19 C30 SING N N 26 I5X C19 C20 SING N N 27 I5X C14 C15 SING Y N 28 I5X C14 C27 SING N N 29 I5X C2 C1 DOUB Y N 30 I5X C15 C21 SING N N 31 I5X C20 C21 SING N N 32 I5X C21 O28 DOUB N N 33 I5X C10 H1 SING N N 34 I5X C27 H2 SING N N 35 I5X C27 H3 SING N N 36 I5X C27 H4 SING N N 37 I5X C29 H5 SING N N 38 I5X C29 H6 SING N N 39 I5X C29 H7 SING N N 40 I5X C30 H8 SING N N 41 I5X C30 H9 SING N N 42 I5X C30 H10 SING N N 43 I5X C1 H11 SING N N 44 I5X C18 H12 SING N N 45 I5X C18 H13 SING N N 46 I5X C2 H14 SING N N 47 I5X C20 H15 SING N N 48 I5X C20 H16 SING N N 49 I5X C22 H17 SING N N 50 I5X C22 H18 SING N N 51 I5X C23 H19 SING N N 52 I5X C23 H20 SING N N 53 I5X C25 H21 SING N N 54 I5X C25 H22 SING N N 55 I5X C25 H23 SING N N 56 I5X C3 H24 SING N N 57 I5X C4 H25 SING N N 58 I5X N11 H26 SING N N 59 I5X N17 H27 SING N N 60 I5X N7 H28 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor I5X InChI InChI 1.03 "InChI=1S/C23H28N4O2S/c1-13-19-17(11-23(2,3)12-18(19)28)24-20(13)22(29)27-16(9-10-30-4)21-25-14-7-5-6-8-15(14)26-21/h5-8,16,24H,9-12H2,1-4H3,(H,25,26)(H,27,29)/t16-/m0/s1" I5X InChIKey InChI 1.03 MANBWNSTKHJLJI-INIZCTEOSA-N I5X SMILES_CANONICAL CACTVS 3.385 "CSCC[C@H](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)c3[nH]c4ccccc4n3" I5X SMILES CACTVS 3.385 "CSCC[CH](NC(=O)c1[nH]c2CC(C)(C)CC(=O)c2c1C)c3[nH]c4ccccc4n3" I5X SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c2c([nH]c1C(=O)N[C@@H](CCSC)c3[nH]c4ccccc4n3)CC(CC2=O)(C)C" I5X SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c2c([nH]c1C(=O)NC(CCSC)c3[nH]c4ccccc4n3)CC(CC2=O)(C)C" # _pdbx_chem_comp_identifier.comp_id I5X _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "~{N}-[(1~{S})-1-(1~{H}-benzimidazol-2-yl)-3-methylsulfanyl-propyl]-3,6,6-trimethyl-4-oxidanylidene-5,7-dihydro-1~{H}-indole-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site I5X "Create component" 2022-06-10 PDBJ I5X "Initial release" 2023-03-29 RCSB #