data_I5Z
#
_chem_comp.id I5Z
_chem_comp.name 6-cyclopropyl-1H-pyrimidine-2,4-dione
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H8 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-02-12
_chem_comp.pdbx_modified_date 2022-08-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 152.151
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code I5Z
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7R5W
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
I5Z C10 C1 C 0 1 N N N 13.333 27.021 -4.980 3.044 -0.341 0.860 C10 I5Z 1
I5Z C02 C2 C 0 1 N N N 17.419 25.263 -5.696 -1.005 1.274 0.018 C02 I5Z 2
I5Z C04 C3 C 0 1 N N N 18.109 27.480 -6.767 -1.660 -0.969 0.005 C04 I5Z 3
I5Z C06 C4 C 0 1 N N N 16.706 27.973 -6.741 -0.301 -1.353 -0.107 C06 I5Z 4
I5Z C07 C5 C 0 1 N N N 15.702 27.048 -6.193 0.651 -0.397 -0.145 C07 I5Z 5
I5Z C09 C6 C 0 1 N N N 14.244 27.398 -6.136 2.104 -0.779 -0.264 C09 I5Z 6
I5Z C11 C7 C 0 1 N N N 13.208 26.296 -6.318 3.114 0.345 -0.505 C11 I5Z 7
I5Z N03 N1 N 0 1 N N N 18.455 26.180 -6.240 -1.974 0.341 0.064 N03 I5Z 8
I5Z N08 N2 N 0 1 N N N 16.020 25.731 -5.693 0.290 0.922 -0.087 N08 I5Z 9
I5Z O01 O1 O 0 1 N N N 17.711 24.178 -5.301 -1.303 2.451 0.068 O01 I5Z 10
I5Z O05 O2 O 0 1 N N N 18.958 28.167 -7.212 -2.536 -1.814 0.041 O05 I5Z 11
I5Z H1 H1 H 0 1 N N N 12.543 27.714 -4.654 2.612 0.225 1.686 H1 I5Z 12
I5Z H2 H2 H 0 1 N N N 13.743 26.495 -4.106 3.858 -1.014 1.127 H2 I5Z 13
I5Z H5 H5 H 0 1 N N N 13.982 28.347 -6.626 2.299 -1.742 -0.737 H5 I5Z 14
I5Z H6 H6 H 0 1 N N N 12.329 26.467 -6.957 2.727 1.362 -0.578 H6 I5Z 15
I5Z H7 H7 H 0 1 N N N 13.529 25.248 -6.408 3.973 0.123 -1.137 H7 I5Z 16
I5Z H8 H8 H 0 1 N N N 19.412 25.891 -6.241 -2.902 0.612 0.141 H8 I5Z 17
I5Z H3 H3 H 0 1 N N N 16.439 28.955 -7.104 -0.031 -2.398 -0.155 H3 I5Z 18
I5Z H4 H4 H 0 1 N N N 15.294 25.138 -5.346 0.973 1.609 -0.122 H4 I5Z 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
I5Z O05 C04 DOUB N N 1
I5Z C04 C06 SING N N 2
I5Z C04 N03 SING N N 3
I5Z C06 C07 DOUB N N 4
I5Z C11 C09 SING N N 5
I5Z C11 C10 SING N N 6
I5Z N03 C02 SING N N 7
I5Z C07 C09 SING N N 8
I5Z C07 N08 SING N N 9
I5Z C09 C10 SING N N 10
I5Z C02 N08 SING N N 11
I5Z C02 O01 DOUB N N 12
I5Z C10 H1 SING N N 13
I5Z C10 H2 SING N N 14
I5Z C09 H5 SING N N 15
I5Z C11 H6 SING N N 16
I5Z C11 H7 SING N N 17
I5Z N03 H8 SING N N 18
I5Z C06 H3 SING N N 19
I5Z N08 H4 SING N N 20
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
I5Z InChI InChI 1.06 "InChI=1S/C7H8N2O2/c10-6-3-5(4-1-2-4)8-7(11)9-6/h3-4H,1-2H2,(H2,8,9,10,11)"
I5Z InChIKey InChI 1.06 ABHXYFPEQCXJJJ-UHFFFAOYSA-N
I5Z SMILES_CANONICAL CACTVS 3.385 "O=C1NC(=O)C=C(N1)C2CC2"
I5Z SMILES CACTVS 3.385 "O=C1NC(=O)C=C(N1)C2CC2"
I5Z SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C1CC1C2=CC(=O)NC(=O)N2"
I5Z SMILES "OpenEye OEToolkits" 2.0.7 "C1CC1C2=CC(=O)NC(=O)N2"
#
_pdbx_chem_comp_identifier.comp_id I5Z
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "6-cyclopropyl-1~{H}-pyrimidine-2,4-dione"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
I5Z "Create component" 2022-02-12 PDBE
I5Z "Initial release" 2022-03-16 RCSB
I5Z "Modify aromatic_flag" 2022-06-23 PDBE
I5Z "Modify descriptor" 2022-08-22 RCSB
#